Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03810

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03808 and MPMX20_03809 are separated by 17 nucleotidesMPMX20_03809 and MPMX20_03810 are separated by 21 nucleotidesMPMX20_03810 and MPMX20_03811 overlap by 4 nucleotidesMPMX20_03811 and MPMX20_03812 are separated by 3 nucleotidesMPMX20_03812 and MPMX20_03813 overlap by 8 nucleotides MPMX20_03808: MPMX20_03808 - putative protein YggR, at 4,013,457 to 4,014,482 _03808 MPMX20_03809: MPMX20_03809 - Pyridoxal phosphate homeostasis protein, at 4,014,500 to 4,015,201 _03809 MPMX20_03810: MPMX20_03810 - hypothetical protein, at 4,015,223 to 4,015,789 _03810 MPMX20_03811: MPMX20_03811 - hypothetical protein, at 4,015,786 to 4,016,082 _03811 MPMX20_03812: MPMX20_03812 - dITP/XTP pyrophosphatase, at 4,016,086 to 4,016,679 _03812 MPMX20_03813: MPMX20_03813 - Heme chaperone HemW, at 4,016,672 to 4,017,814 _03813 Position (kb) 4015 4016Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4014.228 kb on - strand, within MPMX20_03808at 4014.307 kb on + strand, within MPMX20_03808at 4014.353 kb on - strand, within MPMX20_03808at 4014.394 kb on - strandat 4014.394 kb on - strandat 4014.399 kb on - strandat 4014.399 kb on - strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.433 kb on - strandat 4014.433 kb on - strandat 4014.433 kb on - strandat 4014.433 kb on - strandat 4014.446 kb on + strandat 4014.481 kb on + strandat 4014.481 kb on + strandat 4014.507 kb on + strandat 4014.515 kb on - strandat 4014.519 kb on + strandat 4014.527 kb on - strandat 4014.607 kb on + strand, within MPMX20_03809at 4014.652 kb on + strand, within MPMX20_03809at 4014.705 kb on + strand, within MPMX20_03809at 4014.715 kb on + strand, within MPMX20_03809at 4014.715 kb on + strand, within MPMX20_03809at 4014.758 kb on - strand, within MPMX20_03809at 4014.855 kb on + strand, within MPMX20_03809at 4014.959 kb on + strand, within MPMX20_03809at 4014.962 kb on - strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.977 kb on - strand, within MPMX20_03809at 4014.984 kb on + strand, within MPMX20_03809at 4015.014 kb on - strand, within MPMX20_03809at 4015.055 kb on - strand, within MPMX20_03809at 4015.136 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.154 kb on - strandat 4015.154 kb on - strandat 4015.216 kb on - strandat 4015.228 kb on - strandat 4015.254 kb on + strandat 4015.264 kb on + strandat 4015.272 kb on - strandat 4015.279 kb on + strandat 4015.360 kb on + strand, within MPMX20_03810at 4015.410 kb on + strand, within MPMX20_03810at 4015.428 kb on + strand, within MPMX20_03810at 4015.462 kb on + strand, within MPMX20_03810at 4015.470 kb on - strand, within MPMX20_03810at 4015.470 kb on - strand, within MPMX20_03810at 4015.505 kb on + strand, within MPMX20_03810at 4015.513 kb on - strand, within MPMX20_03810at 4015.513 kb on - strand, within MPMX20_03810at 4015.547 kb on - strand, within MPMX20_03810at 4015.555 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.575 kb on + strand, within MPMX20_03810at 4015.583 kb on - strand, within MPMX20_03810at 4015.583 kb on - strand, within MPMX20_03810at 4015.583 kb on - strand, within MPMX20_03810at 4015.583 kb on - strand, within MPMX20_03810at 4015.583 kb on - strand, within MPMX20_03810at 4015.583 kb on - strand, within MPMX20_03810at 4015.587 kb on + strand, within MPMX20_03810at 4015.593 kb on + strand, within MPMX20_03810at 4015.611 kb on + strand, within MPMX20_03810at 4015.711 kb on - strand, within MPMX20_03810at 4015.728 kb on + strand, within MPMX20_03810at 4015.738 kb on + strandat 4015.752 kb on - strandat 4015.795 kb on + strandat 4015.872 kb on + strand, within MPMX20_03811at 4015.880 kb on - strand, within MPMX20_03811at 4015.909 kb on - strand, within MPMX20_03811at 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.171 kb on - strand, within MPMX20_03812at 4016.183 kb on + strand, within MPMX20_03812at 4016.195 kb on - strand, within MPMX20_03812at 4016.212 kb on + strand, within MPMX20_03812at 4016.313 kb on + strand, within MPMX20_03812at 4016.329 kb on + strand, within MPMX20_03812at 4016.431 kb on + strand, within MPMX20_03812at 4016.444 kb on + strand, within MPMX20_03812at 4016.444 kb on + strand, within MPMX20_03812at 4016.444 kb on - strand, within MPMX20_03812at 4016.446 kb on + strand, within MPMX20_03812at 4016.446 kb on + strand, within MPMX20_03812at 4016.446 kb on + strand, within MPMX20_03812at 4016.454 kb on - strand, within MPMX20_03812at 4016.475 kb on + strand, within MPMX20_03812at 4016.475 kb on + strand, within MPMX20_03812at 4016.483 kb on - strand, within MPMX20_03812at 4016.483 kb on - strand, within MPMX20_03812at 4016.483 kb on - strand, within MPMX20_03812at 4016.580 kb on + strand, within MPMX20_03812at 4016.604 kb on - strand, within MPMX20_03812at 4016.696 kb on - strandat 4016.710 kb on + strandat 4016.716 kb on - strandat 4016.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,014,228 - MPMX20_03808 0.75 -1.5
4,014,307 + MPMX20_03808 0.83 -3.7
4,014,353 - MPMX20_03808 0.87 +0.1
4,014,394 - +0.7
4,014,394 - +0.9
4,014,399 - +2.3
4,014,399 - -1.1
4,014,425 + +1.4
4,014,425 + -1.5
4,014,425 + -0.3
4,014,425 + +1.5
4,014,425 + -0.0
4,014,425 + +2.4
4,014,433 - +0.8
4,014,433 - -1.2
4,014,433 - +2.3
4,014,433 - +0.9
4,014,446 + +2.6
4,014,481 + -0.8
4,014,481 + -1.7
4,014,507 + -0.8
4,014,515 - +0.4
4,014,519 + +1.4
4,014,527 - +1.1
4,014,607 + MPMX20_03809 0.15 +1.5
4,014,652 + MPMX20_03809 0.22 -2.2
4,014,705 + MPMX20_03809 0.29 +2.6
4,014,715 + MPMX20_03809 0.31 -3.3
4,014,715 + MPMX20_03809 0.31 +1.7
4,014,758 - MPMX20_03809 0.37 -0.2
4,014,855 + MPMX20_03809 0.51 +1.3
4,014,959 + MPMX20_03809 0.65 -1.8
4,014,962 - MPMX20_03809 0.66 +1.0
4,014,969 + MPMX20_03809 0.67 +0.6
4,014,969 + MPMX20_03809 0.67 +2.8
4,014,969 + MPMX20_03809 0.67 -0.4
4,014,969 + MPMX20_03809 0.67 +3.3
4,014,969 + MPMX20_03809 0.67 -0.4
4,014,977 - MPMX20_03809 0.68 +2.5
4,014,984 + MPMX20_03809 0.69 +2.0
4,015,014 - MPMX20_03809 0.73 +1.0
4,015,055 - MPMX20_03809 0.79 +1.8
4,015,136 + +2.1
4,015,146 + +1.1
4,015,146 + +1.2
4,015,146 + -2.2
4,015,146 + +0.2
4,015,146 + -0.2
4,015,146 + +1.9
4,015,154 - -0.6
4,015,154 - +0.9
4,015,216 - -0.0
4,015,228 - -0.1
4,015,254 + -0.4
4,015,264 + -0.8
4,015,272 - +1.0
4,015,279 + +2.3
4,015,360 + MPMX20_03810 0.24 -1.2
4,015,410 + MPMX20_03810 0.33 +0.7
4,015,428 + MPMX20_03810 0.36 +0.2
4,015,462 + MPMX20_03810 0.42 -0.0
4,015,470 - MPMX20_03810 0.44 -2.3
4,015,470 - MPMX20_03810 0.44 -1.9
4,015,505 + MPMX20_03810 0.50 -2.3
4,015,513 - MPMX20_03810 0.51 -0.2
4,015,513 - MPMX20_03810 0.51 -2.2
4,015,547 - MPMX20_03810 0.57 +0.9
4,015,555 + MPMX20_03810 0.59 +1.0
4,015,575 + MPMX20_03810 0.62 -2.9
4,015,575 + MPMX20_03810 0.62 +1.8
4,015,575 + MPMX20_03810 0.62 +2.0
4,015,575 + MPMX20_03810 0.62 -1.4
4,015,575 + MPMX20_03810 0.62 +1.0
4,015,575 + MPMX20_03810 0.62 +1.1
4,015,575 + MPMX20_03810 0.62 +2.0
4,015,575 + MPMX20_03810 0.62 +3.3
4,015,583 - MPMX20_03810 0.63 +1.0
4,015,583 - MPMX20_03810 0.63 -0.2
4,015,583 - MPMX20_03810 0.63 -1.6
4,015,583 - MPMX20_03810 0.63 +0.0
4,015,583 - MPMX20_03810 0.63 -0.0
4,015,583 - MPMX20_03810 0.63 -1.9
4,015,587 + MPMX20_03810 0.64 +1.0
4,015,593 + MPMX20_03810 0.65 -0.6
4,015,611 + MPMX20_03810 0.68 -3.1
4,015,711 - MPMX20_03810 0.86 -0.7
4,015,728 + MPMX20_03810 0.89 -1.3
4,015,738 + +0.4
4,015,752 - -0.3
4,015,795 + -1.0
4,015,872 + MPMX20_03811 0.29 -2.0
4,015,880 - MPMX20_03811 0.32 -0.4
4,015,909 - MPMX20_03811 0.41 -0.5
4,016,076 + +0.4
4,016,076 + +0.6
4,016,076 + -1.2
4,016,076 + -1.2
4,016,076 + +1.9
4,016,076 + -0.3
4,016,076 + -1.1
4,016,084 - +1.2
4,016,084 - -0.0
4,016,084 - +1.0
4,016,084 - -1.5
4,016,084 - -0.2
4,016,171 - MPMX20_03812 0.14 -1.6
4,016,183 + MPMX20_03812 0.16 -0.8
4,016,195 - MPMX20_03812 0.18 -2.9
4,016,212 + MPMX20_03812 0.21 -2.5
4,016,313 + MPMX20_03812 0.38 -1.4
4,016,329 + MPMX20_03812 0.41 -2.5
4,016,431 + MPMX20_03812 0.58 -0.8
4,016,444 + MPMX20_03812 0.60 -1.7
4,016,444 + MPMX20_03812 0.60 -4.5
4,016,444 - MPMX20_03812 0.60 -1.7
4,016,446 + MPMX20_03812 0.61 -1.2
4,016,446 + MPMX20_03812 0.61 -4.1
4,016,446 + MPMX20_03812 0.61 -2.2
4,016,454 - MPMX20_03812 0.62 -1.9
4,016,475 + MPMX20_03812 0.65 +1.8
4,016,475 + MPMX20_03812 0.65 -0.0
4,016,483 - MPMX20_03812 0.67 -2.1
4,016,483 - MPMX20_03812 0.67 -3.5
4,016,483 - MPMX20_03812 0.67 -2.3
4,016,580 + MPMX20_03812 0.83 -2.5
4,016,604 - MPMX20_03812 0.87 -3.3
4,016,696 - -1.0
4,016,710 + -3.5
4,016,716 - -0.3
4,016,718 - +0.4

Or see this region's nucleotide sequence