Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03466 and MPMX20_03467 overlap by 4 nucleotides MPMX20_03467 and MPMX20_03468 are separated by 60 nucleotides
MPMX20_03466: MPMX20_03466 - Bifunctional chorismate mutase/prephenate dehydratase, at 3,657,537 to 3,658,697
_03466
MPMX20_03467: MPMX20_03467 - 6-deoxy-6-sulfogluconolactonase, at 3,658,694 to 3,659,566
_03467
MPMX20_03468: MPMX20_03468 - T-protein, at 3,659,627 to 3,660,748
_03468
Position (kb)
3658
3659
3660 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3657.709 kb on + strand, within MPMX20_03466 at 3657.797 kb on - strand, within MPMX20_03466 at 3657.802 kb on - strand, within MPMX20_03466 at 3657.844 kb on + strand, within MPMX20_03466 at 3657.849 kb on + strand, within MPMX20_03466 at 3657.895 kb on - strand, within MPMX20_03466 at 3657.899 kb on + strand, within MPMX20_03466 at 3657.907 kb on - strand, within MPMX20_03466 at 3657.925 kb on + strand, within MPMX20_03466 at 3657.986 kb on + strand, within MPMX20_03466 at 3658.021 kb on + strand, within MPMX20_03466 at 3658.021 kb on + strand, within MPMX20_03466 at 3658.058 kb on + strand, within MPMX20_03466 at 3658.060 kb on + strand, within MPMX20_03466 at 3658.066 kb on - strand, within MPMX20_03466 at 3658.068 kb on - strand, within MPMX20_03466 at 3658.123 kb on - strand, within MPMX20_03466 at 3658.126 kb on + strand, within MPMX20_03466 at 3658.152 kb on + strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.160 kb on - strand, within MPMX20_03466 at 3658.171 kb on + strand, within MPMX20_03466 at 3658.178 kb on + strand, within MPMX20_03466 at 3658.181 kb on + strand, within MPMX20_03466 at 3658.245 kb on - strand, within MPMX20_03466 at 3658.245 kb on - strand, within MPMX20_03466 at 3658.319 kb on - strand, within MPMX20_03466 at 3658.320 kb on + strand, within MPMX20_03466 at 3658.380 kb on + strand, within MPMX20_03466 at 3658.469 kb on + strand, within MPMX20_03466 at 3658.469 kb on + strand, within MPMX20_03466 at 3658.477 kb on - strand, within MPMX20_03466 at 3658.477 kb on - strand, within MPMX20_03466 at 3658.477 kb on - strand, within MPMX20_03466 at 3658.477 kb on - strand, within MPMX20_03466 at 3658.503 kb on - strand, within MPMX20_03466 at 3658.580 kb on - strand, within MPMX20_03466 at 3658.689 kb on - strand at 3658.752 kb on - strand at 3658.899 kb on - strand, within MPMX20_03467 at 3658.913 kb on - strand, within MPMX20_03467 at 3658.977 kb on + strand, within MPMX20_03467 at 3658.983 kb on + strand, within MPMX20_03467 at 3658.985 kb on - strand, within MPMX20_03467 at 3658.985 kb on - strand, within MPMX20_03467 at 3658.996 kb on - strand, within MPMX20_03467 at 3658.999 kb on + strand, within MPMX20_03467 at 3659.007 kb on - strand, within MPMX20_03467 at 3659.080 kb on + strand, within MPMX20_03467 at 3659.088 kb on - strand, within MPMX20_03467 at 3659.088 kb on - strand, within MPMX20_03467 at 3659.191 kb on - strand, within MPMX20_03467 at 3659.220 kb on - strand, within MPMX20_03467 at 3659.223 kb on - strand, within MPMX20_03467 at 3659.237 kb on - strand, within MPMX20_03467 at 3659.319 kb on + strand, within MPMX20_03467 at 3659.376 kb on + strand, within MPMX20_03467 at 3659.376 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.386 kb on + strand, within MPMX20_03467 at 3659.396 kb on + strand, within MPMX20_03467 at 3659.465 kb on - strand, within MPMX20_03467 at 3659.478 kb on + strand, within MPMX20_03467 at 3659.478 kb on + strand, within MPMX20_03467 at 3659.478 kb on + strand, within MPMX20_03467 at 3659.486 kb on - strand at 3659.486 kb on - strand at 3659.486 kb on - strand at 3659.561 kb on + strand at 3659.561 kb on + strand at 3659.569 kb on - strand at 3659.659 kb on - strand at 3659.755 kb on + strand, within MPMX20_03468 at 3659.762 kb on + strand, within MPMX20_03468 at 3659.763 kb on - strand, within MPMX20_03468 at 3659.803 kb on + strand, within MPMX20_03468 at 3659.803 kb on + strand, within MPMX20_03468 at 3659.803 kb on + strand, within MPMX20_03468 at 3659.811 kb on - strand, within MPMX20_03468 at 3659.821 kb on - strand, within MPMX20_03468 at 3659.851 kb on + strand, within MPMX20_03468 at 3659.895 kb on - strand, within MPMX20_03468 at 3659.963 kb on + strand, within MPMX20_03468 at 3660.022 kb on - strand, within MPMX20_03468 at 3660.043 kb on - strand, within MPMX20_03468 at 3660.072 kb on - strand, within MPMX20_03468 at 3660.074 kb on + strand, within MPMX20_03468 at 3660.084 kb on + strand, within MPMX20_03468 at 3660.102 kb on + strand, within MPMX20_03468 at 3660.115 kb on - strand, within MPMX20_03468 at 3660.119 kb on - strand, within MPMX20_03468 at 3660.313 kb on - strand, within MPMX20_03468 at 3660.334 kb on + strand, within MPMX20_03468 at 3660.432 kb on - strand, within MPMX20_03468 at 3660.432 kb on - strand, within MPMX20_03468 at 3660.529 kb on - strand, within MPMX20_03468
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,657,709 + MPMX20_03466 0.15 +3.4 3,657,797 - MPMX20_03466 0.22 +4.9 3,657,802 - MPMX20_03466 0.23 +3.1 3,657,844 + MPMX20_03466 0.26 +4.2 3,657,849 + MPMX20_03466 0.27 +4.3 3,657,895 - MPMX20_03466 0.31 +3.8 3,657,899 + MPMX20_03466 0.31 +4.1 3,657,907 - MPMX20_03466 0.32 +5.5 3,657,925 + MPMX20_03466 0.33 +0.5 3,657,986 + MPMX20_03466 0.39 +0.7 3,658,021 + MPMX20_03466 0.42 +4.3 3,658,021 + MPMX20_03466 0.42 +4.6 3,658,058 + MPMX20_03466 0.45 +3.9 3,658,060 + MPMX20_03466 0.45 +1.4 3,658,066 - MPMX20_03466 0.46 +4.9 3,658,068 - MPMX20_03466 0.46 +2.4 3,658,123 - MPMX20_03466 0.50 +2.2 3,658,126 + MPMX20_03466 0.51 +4.8 3,658,152 + MPMX20_03466 0.53 +3.4 3,658,160 - MPMX20_03466 0.54 +4.5 3,658,160 - MPMX20_03466 0.54 +3.9 3,658,160 - MPMX20_03466 0.54 +5.1 3,658,160 - MPMX20_03466 0.54 +3.2 3,658,171 + MPMX20_03466 0.55 +3.7 3,658,178 + MPMX20_03466 0.55 +2.1 3,658,181 + MPMX20_03466 0.55 +1.7 3,658,245 - MPMX20_03466 0.61 +3.3 3,658,245 - MPMX20_03466 0.61 +2.9 3,658,319 - MPMX20_03466 0.67 +4.0 3,658,320 + MPMX20_03466 0.67 +5.5 3,658,380 + MPMX20_03466 0.73 -0.2 3,658,469 + MPMX20_03466 0.80 -0.5 3,658,469 + MPMX20_03466 0.80 +2.3 3,658,477 - MPMX20_03466 0.81 -0.6 3,658,477 - MPMX20_03466 0.81 -1.8 3,658,477 - MPMX20_03466 0.81 +5.9 3,658,477 - MPMX20_03466 0.81 +1.1 3,658,503 - MPMX20_03466 0.83 +0.5 3,658,580 - MPMX20_03466 0.90 -0.2 3,658,689 - +3.7 3,658,752 - +4.9 3,658,899 - MPMX20_03467 0.23 -3.2 3,658,913 - MPMX20_03467 0.25 -1.8 3,658,977 + MPMX20_03467 0.32 -1.8 3,658,983 + MPMX20_03467 0.33 -1.3 3,658,985 - MPMX20_03467 0.33 +2.1 3,658,985 - MPMX20_03467 0.33 -1.5 3,658,996 - MPMX20_03467 0.35 +0.7 3,658,999 + MPMX20_03467 0.35 +0.5 3,659,007 - MPMX20_03467 0.36 +1.5 3,659,080 + MPMX20_03467 0.44 +0.5 3,659,088 - MPMX20_03467 0.45 -0.4 3,659,088 - MPMX20_03467 0.45 +0.6 3,659,191 - MPMX20_03467 0.57 +2.2 3,659,220 - MPMX20_03467 0.60 +1.1 3,659,223 - MPMX20_03467 0.61 -1.2 3,659,237 - MPMX20_03467 0.62 +0.5 3,659,319 + MPMX20_03467 0.72 +0.8 3,659,376 + MPMX20_03467 0.78 +0.2 3,659,376 + MPMX20_03467 0.78 -1.1 3,659,386 + MPMX20_03467 0.79 -0.0 3,659,386 + MPMX20_03467 0.79 +0.2 3,659,386 + MPMX20_03467 0.79 -1.6 3,659,386 + MPMX20_03467 0.79 +0.0 3,659,396 + MPMX20_03467 0.80 +7.6 3,659,465 - MPMX20_03467 0.88 -2.2 3,659,478 + MPMX20_03467 0.90 +2.8 3,659,478 + MPMX20_03467 0.90 -1.4 3,659,478 + MPMX20_03467 0.90 +1.8 3,659,486 - +1.4 3,659,486 - -1.2 3,659,486 - -2.1 3,659,561 + -0.5 3,659,561 + -2.2 3,659,569 - +1.2 3,659,659 - +0.5 3,659,755 + MPMX20_03468 0.11 +5.0 3,659,762 + MPMX20_03468 0.12 +3.1 3,659,763 - MPMX20_03468 0.12 +7.8 3,659,803 + MPMX20_03468 0.16 -0.5 3,659,803 + MPMX20_03468 0.16 +5.6 3,659,803 + MPMX20_03468 0.16 +6.5 3,659,811 - MPMX20_03468 0.16 +3.8 3,659,821 - MPMX20_03468 0.17 +4.8 3,659,851 + MPMX20_03468 0.20 +5.0 3,659,895 - MPMX20_03468 0.24 +4.4 3,659,963 + MPMX20_03468 0.30 +3.9 3,660,022 - MPMX20_03468 0.35 +5.8 3,660,043 - MPMX20_03468 0.37 +4.0 3,660,072 - MPMX20_03468 0.40 +1.7 3,660,074 + MPMX20_03468 0.40 +5.6 3,660,084 + MPMX20_03468 0.41 +3.8 3,660,102 + MPMX20_03468 0.42 +6.3 3,660,115 - MPMX20_03468 0.43 +3.8 3,660,119 - MPMX20_03468 0.44 +5.3 3,660,313 - MPMX20_03468 0.61 +4.6 3,660,334 + MPMX20_03468 0.63 +1.5 3,660,432 - MPMX20_03468 0.72 +2.9 3,660,432 - MPMX20_03468 0.72 +4.4 3,660,529 - MPMX20_03468 0.80 +4.1
Or see this region's nucleotide sequence