Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03188

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03187 and MPMX20_03188 overlap by 4 nucleotidesMPMX20_03188 and MPMX20_03189 are separated by 33 nucleotides MPMX20_03187: MPMX20_03187 - Anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 3,355,440 to 3,356,657 _03187 MPMX20_03188: MPMX20_03188 - Anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 3,356,654 to 3,357,844 _03188 MPMX20_03189: MPMX20_03189 - Nicotinamide-nucleotide amidohydrolase PncC, at 3,357,878 to 3,359,077 _03189 Position (kb) 3356 3357 3358Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3355.672 kb on + strand, within MPMX20_03187at 3355.740 kb on - strand, within MPMX20_03187at 3355.740 kb on - strand, within MPMX20_03187at 3355.742 kb on + strand, within MPMX20_03187at 3355.757 kb on - strand, within MPMX20_03187at 3355.771 kb on + strand, within MPMX20_03187at 3355.782 kb on - strand, within MPMX20_03187at 3355.796 kb on + strand, within MPMX20_03187at 3355.796 kb on + strand, within MPMX20_03187at 3355.811 kb on + strand, within MPMX20_03187at 3355.907 kb on + strand, within MPMX20_03187at 3356.014 kb on - strand, within MPMX20_03187at 3356.051 kb on + strand, within MPMX20_03187at 3356.059 kb on - strand, within MPMX20_03187at 3356.059 kb on - strand, within MPMX20_03187at 3356.065 kb on + strand, within MPMX20_03187at 3356.065 kb on + strand, within MPMX20_03187at 3356.109 kb on + strand, within MPMX20_03187at 3356.130 kb on - strand, within MPMX20_03187at 3356.207 kb on - strand, within MPMX20_03187at 3356.273 kb on - strand, within MPMX20_03187at 3356.319 kb on - strand, within MPMX20_03187at 3356.352 kb on + strand, within MPMX20_03187at 3356.400 kb on - strand, within MPMX20_03187at 3356.401 kb on - strand, within MPMX20_03187at 3356.545 kb on - strandat 3356.547 kb on + strandat 3356.547 kb on + strandat 3356.555 kb on - strandat 3356.612 kb on + strandat 3356.612 kb on + strandat 3356.612 kb on + strandat 3356.620 kb on - strandat 3356.639 kb on + strandat 3356.677 kb on - strandat 3356.693 kb on + strandat 3356.736 kb on + strandat 3356.829 kb on - strand, within MPMX20_03188at 3356.834 kb on - strand, within MPMX20_03188at 3356.951 kb on - strand, within MPMX20_03188at 3356.952 kb on - strand, within MPMX20_03188at 3356.956 kb on + strand, within MPMX20_03188at 3356.986 kb on + strand, within MPMX20_03188at 3357.037 kb on + strand, within MPMX20_03188at 3357.038 kb on - strand, within MPMX20_03188at 3357.040 kb on + strand, within MPMX20_03188at 3357.055 kb on - strand, within MPMX20_03188at 3357.194 kb on + strand, within MPMX20_03188at 3357.236 kb on - strand, within MPMX20_03188at 3357.387 kb on + strand, within MPMX20_03188at 3357.387 kb on + strand, within MPMX20_03188at 3357.387 kb on + strand, within MPMX20_03188at 3357.395 kb on - strand, within MPMX20_03188at 3357.395 kb on - strand, within MPMX20_03188at 3357.408 kb on + strand, within MPMX20_03188at 3357.428 kb on + strand, within MPMX20_03188at 3357.482 kb on + strand, within MPMX20_03188at 3357.545 kb on - strand, within MPMX20_03188at 3357.585 kb on - strand, within MPMX20_03188at 3357.609 kb on + strand, within MPMX20_03188at 3357.702 kb on + strand, within MPMX20_03188at 3357.728 kb on - strandat 3357.730 kb on - strandat 3357.778 kb on + strandat 3357.838 kb on + strandat 3357.838 kb on + strandat 3357.838 kb on + strandat 3357.838 kb on + strandat 3357.838 kb on + strandat 3357.846 kb on - strandat 3357.846 kb on - strandat 3357.985 kb on + strandat 3358.070 kb on + strand, within MPMX20_03189at 3358.159 kb on + strand, within MPMX20_03189at 3358.163 kb on - strand, within MPMX20_03189at 3358.225 kb on + strand, within MPMX20_03189at 3358.245 kb on + strand, within MPMX20_03189at 3358.294 kb on - strand, within MPMX20_03189at 3358.294 kb on - strand, within MPMX20_03189at 3358.340 kb on + strand, within MPMX20_03189at 3358.363 kb on + strand, within MPMX20_03189at 3358.371 kb on - strand, within MPMX20_03189at 3358.371 kb on - strand, within MPMX20_03189at 3358.440 kb on - strand, within MPMX20_03189at 3358.440 kb on - strand, within MPMX20_03189at 3358.521 kb on - strand, within MPMX20_03189at 3358.528 kb on + strand, within MPMX20_03189at 3358.545 kb on + strand, within MPMX20_03189at 3358.545 kb on + strand, within MPMX20_03189at 3358.545 kb on + strand, within MPMX20_03189at 3358.591 kb on - strand, within MPMX20_03189at 3358.675 kb on - strand, within MPMX20_03189at 3358.804 kb on + strand, within MPMX20_03189at 3358.812 kb on - strand, within MPMX20_03189at 3358.843 kb on - strand, within MPMX20_03189

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,355,672 + MPMX20_03187 0.19 -0.3
3,355,740 - MPMX20_03187 0.25 -0.6
3,355,740 - MPMX20_03187 0.25 -2.5
3,355,742 + MPMX20_03187 0.25 -0.5
3,355,757 - MPMX20_03187 0.26 +0.2
3,355,771 + MPMX20_03187 0.27 -1.4
3,355,782 - MPMX20_03187 0.28 -1.4
3,355,796 + MPMX20_03187 0.29 +0.4
3,355,796 + MPMX20_03187 0.29 +0.0
3,355,811 + MPMX20_03187 0.30 +0.0
3,355,907 + MPMX20_03187 0.38 -2.5
3,356,014 - MPMX20_03187 0.47 -1.1
3,356,051 + MPMX20_03187 0.50 -1.3
3,356,059 - MPMX20_03187 0.51 -1.4
3,356,059 - MPMX20_03187 0.51 +0.4
3,356,065 + MPMX20_03187 0.51 -1.3
3,356,065 + MPMX20_03187 0.51 -0.3
3,356,109 + MPMX20_03187 0.55 -1.9
3,356,130 - MPMX20_03187 0.57 +0.2
3,356,207 - MPMX20_03187 0.63 -1.8
3,356,273 - MPMX20_03187 0.68 -0.5
3,356,319 - MPMX20_03187 0.72 +1.0
3,356,352 + MPMX20_03187 0.75 +0.0
3,356,400 - MPMX20_03187 0.79 -0.8
3,356,401 - MPMX20_03187 0.79 +0.3
3,356,545 - -1.0
3,356,547 + +1.5
3,356,547 + -0.7
3,356,555 - -0.1
3,356,612 + -1.7
3,356,612 + +0.7
3,356,612 + +0.7
3,356,620 - +0.3
3,356,639 + -0.2
3,356,677 - -0.6
3,356,693 + +0.7
3,356,736 + +1.0
3,356,829 - MPMX20_03188 0.15 -0.6
3,356,834 - MPMX20_03188 0.15 +0.5
3,356,951 - MPMX20_03188 0.25 +0.6
3,356,952 - MPMX20_03188 0.25 +0.1
3,356,956 + MPMX20_03188 0.25 +0.0
3,356,986 + MPMX20_03188 0.28 -0.4
3,357,037 + MPMX20_03188 0.32 +0.3
3,357,038 - MPMX20_03188 0.32 -1.9
3,357,040 + MPMX20_03188 0.32 +1.2
3,357,055 - MPMX20_03188 0.34 +0.0
3,357,194 + MPMX20_03188 0.45 -0.2
3,357,236 - MPMX20_03188 0.49 +1.3
3,357,387 + MPMX20_03188 0.62 -1.9
3,357,387 + MPMX20_03188 0.62 -2.2
3,357,387 + MPMX20_03188 0.62 -0.3
3,357,395 - MPMX20_03188 0.62 -1.7
3,357,395 - MPMX20_03188 0.62 -0.3
3,357,408 + MPMX20_03188 0.63 +0.0
3,357,428 + MPMX20_03188 0.65 -0.3
3,357,482 + MPMX20_03188 0.70 -2.7
3,357,545 - MPMX20_03188 0.75 -0.3
3,357,585 - MPMX20_03188 0.78 -1.7
3,357,609 + MPMX20_03188 0.80 -2.4
3,357,702 + MPMX20_03188 0.88 +1.1
3,357,728 - -0.8
3,357,730 - -0.8
3,357,778 + -1.5
3,357,838 + +1.1
3,357,838 + +1.3
3,357,838 + +0.8
3,357,838 + +1.0
3,357,838 + -2.2
3,357,846 - +0.3
3,357,846 - +0.7
3,357,985 + +0.7
3,358,070 + MPMX20_03189 0.16 -1.8
3,358,159 + MPMX20_03189 0.23 +3.1
3,358,163 - MPMX20_03189 0.24 -0.5
3,358,225 + MPMX20_03189 0.29 +0.1
3,358,245 + MPMX20_03189 0.31 -0.1
3,358,294 - MPMX20_03189 0.35 +1.8
3,358,294 - MPMX20_03189 0.35 -1.3
3,358,340 + MPMX20_03189 0.39 -1.7
3,358,363 + MPMX20_03189 0.40 -0.0
3,358,371 - MPMX20_03189 0.41 -1.4
3,358,371 - MPMX20_03189 0.41 +0.4
3,358,440 - MPMX20_03189 0.47 -2.9
3,358,440 - MPMX20_03189 0.47 +0.3
3,358,521 - MPMX20_03189 0.54 -2.2
3,358,528 + MPMX20_03189 0.54 -0.2
3,358,545 + MPMX20_03189 0.56 -2.5
3,358,545 + MPMX20_03189 0.56 +0.3
3,358,545 + MPMX20_03189 0.56 +0.1
3,358,591 - MPMX20_03189 0.59 -0.1
3,358,675 - MPMX20_03189 0.66 +1.0
3,358,804 + MPMX20_03189 0.77 +0.0
3,358,812 - MPMX20_03189 0.78 -0.8
3,358,843 - MPMX20_03189 0.80 +0.8

Or see this region's nucleotide sequence