Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03187 and MPMX20_03188 overlap by 4 nucleotides MPMX20_03188 and MPMX20_03189 are separated by 33 nucleotides
MPMX20_03187: MPMX20_03187 - Anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 3,355,440 to 3,356,657
_03187
MPMX20_03188: MPMX20_03188 - Anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 3,356,654 to 3,357,844
_03188
MPMX20_03189: MPMX20_03189 - Nicotinamide-nucleotide amidohydrolase PncC, at 3,357,878 to 3,359,077
_03189
Position (kb)
3356
3357
3358 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3355.672 kb on + strand, within MPMX20_03187 at 3355.740 kb on - strand, within MPMX20_03187 at 3355.740 kb on - strand, within MPMX20_03187 at 3355.742 kb on + strand, within MPMX20_03187 at 3355.757 kb on - strand, within MPMX20_03187 at 3355.771 kb on + strand, within MPMX20_03187 at 3355.782 kb on - strand, within MPMX20_03187 at 3355.796 kb on + strand, within MPMX20_03187 at 3355.796 kb on + strand, within MPMX20_03187 at 3355.811 kb on + strand, within MPMX20_03187 at 3355.907 kb on + strand, within MPMX20_03187 at 3356.014 kb on - strand, within MPMX20_03187 at 3356.051 kb on + strand, within MPMX20_03187 at 3356.059 kb on - strand, within MPMX20_03187 at 3356.059 kb on - strand, within MPMX20_03187 at 3356.065 kb on + strand, within MPMX20_03187 at 3356.065 kb on + strand, within MPMX20_03187 at 3356.109 kb on + strand, within MPMX20_03187 at 3356.130 kb on - strand, within MPMX20_03187 at 3356.207 kb on - strand, within MPMX20_03187 at 3356.273 kb on - strand, within MPMX20_03187 at 3356.319 kb on - strand, within MPMX20_03187 at 3356.352 kb on + strand, within MPMX20_03187 at 3356.400 kb on - strand, within MPMX20_03187 at 3356.401 kb on - strand, within MPMX20_03187 at 3356.545 kb on - strand at 3356.547 kb on + strand at 3356.547 kb on + strand at 3356.555 kb on - strand at 3356.612 kb on + strand at 3356.612 kb on + strand at 3356.612 kb on + strand at 3356.620 kb on - strand at 3356.639 kb on + strand at 3356.677 kb on - strand at 3356.693 kb on + strand at 3356.736 kb on + strand at 3356.829 kb on - strand, within MPMX20_03188 at 3356.834 kb on - strand, within MPMX20_03188 at 3356.951 kb on - strand, within MPMX20_03188 at 3356.952 kb on - strand, within MPMX20_03188 at 3356.956 kb on + strand, within MPMX20_03188 at 3356.986 kb on + strand, within MPMX20_03188 at 3357.037 kb on + strand, within MPMX20_03188 at 3357.038 kb on - strand, within MPMX20_03188 at 3357.040 kb on + strand, within MPMX20_03188 at 3357.055 kb on - strand, within MPMX20_03188 at 3357.194 kb on + strand, within MPMX20_03188 at 3357.236 kb on - strand, within MPMX20_03188 at 3357.387 kb on + strand, within MPMX20_03188 at 3357.387 kb on + strand, within MPMX20_03188 at 3357.387 kb on + strand, within MPMX20_03188 at 3357.395 kb on - strand, within MPMX20_03188 at 3357.395 kb on - strand, within MPMX20_03188 at 3357.408 kb on + strand, within MPMX20_03188 at 3357.428 kb on + strand, within MPMX20_03188 at 3357.482 kb on + strand, within MPMX20_03188 at 3357.545 kb on - strand, within MPMX20_03188 at 3357.585 kb on - strand, within MPMX20_03188 at 3357.609 kb on + strand, within MPMX20_03188 at 3357.702 kb on + strand, within MPMX20_03188 at 3357.728 kb on - strand at 3357.730 kb on - strand at 3357.778 kb on + strand at 3357.838 kb on + strand at 3357.838 kb on + strand at 3357.838 kb on + strand at 3357.838 kb on + strand at 3357.838 kb on + strand at 3357.846 kb on - strand at 3357.846 kb on - strand at 3357.985 kb on + strand at 3358.070 kb on + strand, within MPMX20_03189 at 3358.159 kb on + strand, within MPMX20_03189 at 3358.163 kb on - strand, within MPMX20_03189 at 3358.225 kb on + strand, within MPMX20_03189 at 3358.245 kb on + strand, within MPMX20_03189 at 3358.294 kb on - strand, within MPMX20_03189 at 3358.294 kb on - strand, within MPMX20_03189 at 3358.340 kb on + strand, within MPMX20_03189 at 3358.363 kb on + strand, within MPMX20_03189 at 3358.371 kb on - strand, within MPMX20_03189 at 3358.371 kb on - strand, within MPMX20_03189 at 3358.440 kb on - strand, within MPMX20_03189 at 3358.440 kb on - strand, within MPMX20_03189 at 3358.521 kb on - strand, within MPMX20_03189 at 3358.528 kb on + strand, within MPMX20_03189 at 3358.545 kb on + strand, within MPMX20_03189 at 3358.545 kb on + strand, within MPMX20_03189 at 3358.545 kb on + strand, within MPMX20_03189 at 3358.591 kb on - strand, within MPMX20_03189 at 3358.675 kb on - strand, within MPMX20_03189 at 3358.804 kb on + strand, within MPMX20_03189 at 3358.812 kb on - strand, within MPMX20_03189 at 3358.843 kb on - strand, within MPMX20_03189
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,355,672 + MPMX20_03187 0.19 -0.3 3,355,740 - MPMX20_03187 0.25 -0.6 3,355,740 - MPMX20_03187 0.25 -2.5 3,355,742 + MPMX20_03187 0.25 -0.5 3,355,757 - MPMX20_03187 0.26 +0.2 3,355,771 + MPMX20_03187 0.27 -1.4 3,355,782 - MPMX20_03187 0.28 -1.4 3,355,796 + MPMX20_03187 0.29 +0.4 3,355,796 + MPMX20_03187 0.29 +0.0 3,355,811 + MPMX20_03187 0.30 +0.0 3,355,907 + MPMX20_03187 0.38 -2.5 3,356,014 - MPMX20_03187 0.47 -1.1 3,356,051 + MPMX20_03187 0.50 -1.3 3,356,059 - MPMX20_03187 0.51 -1.4 3,356,059 - MPMX20_03187 0.51 +0.4 3,356,065 + MPMX20_03187 0.51 -1.3 3,356,065 + MPMX20_03187 0.51 -0.3 3,356,109 + MPMX20_03187 0.55 -1.9 3,356,130 - MPMX20_03187 0.57 +0.2 3,356,207 - MPMX20_03187 0.63 -1.8 3,356,273 - MPMX20_03187 0.68 -0.5 3,356,319 - MPMX20_03187 0.72 +1.0 3,356,352 + MPMX20_03187 0.75 +0.0 3,356,400 - MPMX20_03187 0.79 -0.8 3,356,401 - MPMX20_03187 0.79 +0.3 3,356,545 - -1.0 3,356,547 + +1.5 3,356,547 + -0.7 3,356,555 - -0.1 3,356,612 + -1.7 3,356,612 + +0.7 3,356,612 + +0.7 3,356,620 - +0.3 3,356,639 + -0.2 3,356,677 - -0.6 3,356,693 + +0.7 3,356,736 + +1.0 3,356,829 - MPMX20_03188 0.15 -0.6 3,356,834 - MPMX20_03188 0.15 +0.5 3,356,951 - MPMX20_03188 0.25 +0.6 3,356,952 - MPMX20_03188 0.25 +0.1 3,356,956 + MPMX20_03188 0.25 +0.0 3,356,986 + MPMX20_03188 0.28 -0.4 3,357,037 + MPMX20_03188 0.32 +0.3 3,357,038 - MPMX20_03188 0.32 -1.9 3,357,040 + MPMX20_03188 0.32 +1.2 3,357,055 - MPMX20_03188 0.34 +0.0 3,357,194 + MPMX20_03188 0.45 -0.2 3,357,236 - MPMX20_03188 0.49 +1.3 3,357,387 + MPMX20_03188 0.62 -1.9 3,357,387 + MPMX20_03188 0.62 -2.2 3,357,387 + MPMX20_03188 0.62 -0.3 3,357,395 - MPMX20_03188 0.62 -1.7 3,357,395 - MPMX20_03188 0.62 -0.3 3,357,408 + MPMX20_03188 0.63 +0.0 3,357,428 + MPMX20_03188 0.65 -0.3 3,357,482 + MPMX20_03188 0.70 -2.7 3,357,545 - MPMX20_03188 0.75 -0.3 3,357,585 - MPMX20_03188 0.78 -1.7 3,357,609 + MPMX20_03188 0.80 -2.4 3,357,702 + MPMX20_03188 0.88 +1.1 3,357,728 - -0.8 3,357,730 - -0.8 3,357,778 + -1.5 3,357,838 + +1.1 3,357,838 + +1.3 3,357,838 + +0.8 3,357,838 + +1.0 3,357,838 + -2.2 3,357,846 - +0.3 3,357,846 - +0.7 3,357,985 + +0.7 3,358,070 + MPMX20_03189 0.16 -1.8 3,358,159 + MPMX20_03189 0.23 +3.1 3,358,163 - MPMX20_03189 0.24 -0.5 3,358,225 + MPMX20_03189 0.29 +0.1 3,358,245 + MPMX20_03189 0.31 -0.1 3,358,294 - MPMX20_03189 0.35 +1.8 3,358,294 - MPMX20_03189 0.35 -1.3 3,358,340 + MPMX20_03189 0.39 -1.7 3,358,363 + MPMX20_03189 0.40 -0.0 3,358,371 - MPMX20_03189 0.41 -1.4 3,358,371 - MPMX20_03189 0.41 +0.4 3,358,440 - MPMX20_03189 0.47 -2.9 3,358,440 - MPMX20_03189 0.47 +0.3 3,358,521 - MPMX20_03189 0.54 -2.2 3,358,528 + MPMX20_03189 0.54 -0.2 3,358,545 + MPMX20_03189 0.56 -2.5 3,358,545 + MPMX20_03189 0.56 +0.3 3,358,545 + MPMX20_03189 0.56 +0.1 3,358,591 - MPMX20_03189 0.59 -0.1 3,358,675 - MPMX20_03189 0.66 +1.0 3,358,804 + MPMX20_03189 0.77 +0.0 3,358,812 - MPMX20_03189 0.78 -0.8 3,358,843 - MPMX20_03189 0.80 +0.8
Or see this region's nucleotide sequence