Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03179

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03178 and MPMX20_03179 are separated by 135 nucleotidesMPMX20_03179 and MPMX20_03180 are separated by 146 nucleotides MPMX20_03178: MPMX20_03178 - Sensor histidine kinase RcsC, at 3,340,539 to 3,343,385 _03178 MPMX20_03179: MPMX20_03179 - DNA gyrase subunit A, at 3,343,521 to 3,346,157 _03179 MPMX20_03180: MPMX20_03180 - Ubiquinone biosynthesis O-methyltransferase, at 3,346,304 to 3,347,032 _03180 Position (kb) 3343 3344 3345 3346 3347Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3342.538 kb on - strand, within MPMX20_03178at 3342.538 kb on - strand, within MPMX20_03178at 3342.577 kb on - strand, within MPMX20_03178at 3342.584 kb on + strand, within MPMX20_03178at 3342.707 kb on + strand, within MPMX20_03178at 3342.707 kb on + strand, within MPMX20_03178at 3342.707 kb on + strand, within MPMX20_03178at 3342.715 kb on - strand, within MPMX20_03178at 3342.715 kb on - strand, within MPMX20_03178at 3342.760 kb on - strand, within MPMX20_03178at 3342.773 kb on - strand, within MPMX20_03178at 3342.788 kb on + strand, within MPMX20_03178at 3342.788 kb on + strand, within MPMX20_03178at 3342.908 kb on + strand, within MPMX20_03178at 3342.908 kb on + strand, within MPMX20_03178at 3342.916 kb on - strand, within MPMX20_03178at 3342.916 kb on - strand, within MPMX20_03178at 3342.916 kb on - strand, within MPMX20_03178at 3342.916 kb on - strand, within MPMX20_03178at 3342.916 kb on - strand, within MPMX20_03178at 3342.916 kb on - strand, within MPMX20_03178at 3342.957 kb on + strand, within MPMX20_03178at 3343.006 kb on - strand, within MPMX20_03178at 3343.046 kb on + strand, within MPMX20_03178at 3343.054 kb on - strand, within MPMX20_03178at 3343.149 kb on + strandat 3343.198 kb on + strandat 3343.206 kb on - strandat 3343.206 kb on - strandat 3343.222 kb on - strandat 3343.431 kb on - strandat 3343.611 kb on + strandat 3343.633 kb on + strandat 3343.639 kb on + strandat 3343.645 kb on - strandat 3346.221 kb on + strandat 3346.221 kb on + strandat 3347.064 kb on + strandat 3347.072 kb on - strandat 3347.079 kb on + strandat 3347.079 kb on + strandat 3347.079 kb on + strandat 3347.082 kb on - strandat 3347.087 kb on - strandat 3347.087 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,342,538 - MPMX20_03178 0.70 +0.0
3,342,538 - MPMX20_03178 0.70 -0.6
3,342,577 - MPMX20_03178 0.72 +2.3
3,342,584 + MPMX20_03178 0.72 -1.1
3,342,707 + MPMX20_03178 0.76 -1.3
3,342,707 + MPMX20_03178 0.76 -0.8
3,342,707 + MPMX20_03178 0.76 -1.5
3,342,715 - MPMX20_03178 0.76 -2.3
3,342,715 - MPMX20_03178 0.76 +1.3
3,342,760 - MPMX20_03178 0.78 -0.1
3,342,773 - MPMX20_03178 0.78 +0.5
3,342,788 + MPMX20_03178 0.79 -3.2
3,342,788 + MPMX20_03178 0.79 -1.3
3,342,908 + MPMX20_03178 0.83 -0.5
3,342,908 + MPMX20_03178 0.83 +0.3
3,342,916 - MPMX20_03178 0.83 +0.7
3,342,916 - MPMX20_03178 0.83 -2.4
3,342,916 - MPMX20_03178 0.83 -0.2
3,342,916 - MPMX20_03178 0.83 -2.1
3,342,916 - MPMX20_03178 0.83 -0.4
3,342,916 - MPMX20_03178 0.83 -1.7
3,342,957 + MPMX20_03178 0.85 +0.9
3,343,006 - MPMX20_03178 0.87 +1.6
3,343,046 + MPMX20_03178 0.88 -2.5
3,343,054 - MPMX20_03178 0.88 -2.3
3,343,149 + -2.4
3,343,198 + -1.1
3,343,206 - +0.5
3,343,206 - +1.1
3,343,222 - +6.4
3,343,431 - -1.7
3,343,611 + -0.5
3,343,633 + -0.3
3,343,639 + +0.3
3,343,645 - +3.6
3,346,221 + +1.3
3,346,221 + -0.5
3,347,064 + -1.6
3,347,072 - +0.4
3,347,079 + +0.1
3,347,079 + +1.3
3,347,079 + -0.6
3,347,082 - -1.6
3,347,087 - -1.3
3,347,087 - -2.0

Or see this region's nucleotide sequence