Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03178 and MPMX20_03179 are separated by 135 nucleotides MPMX20_03179 and MPMX20_03180 are separated by 146 nucleotides
MPMX20_03178: MPMX20_03178 - Sensor histidine kinase RcsC, at 3,340,539 to 3,343,385
_03178
MPMX20_03179: MPMX20_03179 - DNA gyrase subunit A, at 3,343,521 to 3,346,157
_03179
MPMX20_03180: MPMX20_03180 - Ubiquinone biosynthesis O-methyltransferase, at 3,346,304 to 3,347,032
_03180
Position (kb)
3343
3344
3345
3346
3347 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3342.538 kb on - strand, within MPMX20_03178 at 3342.538 kb on - strand, within MPMX20_03178 at 3342.577 kb on - strand, within MPMX20_03178 at 3342.584 kb on + strand, within MPMX20_03178 at 3342.707 kb on + strand, within MPMX20_03178 at 3342.707 kb on + strand, within MPMX20_03178 at 3342.707 kb on + strand, within MPMX20_03178 at 3342.715 kb on - strand, within MPMX20_03178 at 3342.715 kb on - strand, within MPMX20_03178 at 3342.760 kb on - strand, within MPMX20_03178 at 3342.773 kb on - strand, within MPMX20_03178 at 3342.788 kb on + strand, within MPMX20_03178 at 3342.788 kb on + strand, within MPMX20_03178 at 3342.908 kb on + strand, within MPMX20_03178 at 3342.908 kb on + strand, within MPMX20_03178 at 3342.916 kb on - strand, within MPMX20_03178 at 3342.916 kb on - strand, within MPMX20_03178 at 3342.916 kb on - strand, within MPMX20_03178 at 3342.916 kb on - strand, within MPMX20_03178 at 3342.916 kb on - strand, within MPMX20_03178 at 3342.916 kb on - strand, within MPMX20_03178 at 3342.957 kb on + strand, within MPMX20_03178 at 3343.006 kb on - strand, within MPMX20_03178 at 3343.046 kb on + strand, within MPMX20_03178 at 3343.054 kb on - strand, within MPMX20_03178 at 3343.149 kb on + strand at 3343.198 kb on + strand at 3343.206 kb on - strand at 3343.206 kb on - strand at 3343.222 kb on - strand at 3343.431 kb on - strand at 3343.611 kb on + strand at 3343.633 kb on + strand at 3343.639 kb on + strand at 3343.645 kb on - strand at 3346.221 kb on + strand at 3346.221 kb on + strand at 3347.064 kb on + strand at 3347.072 kb on - strand at 3347.079 kb on + strand at 3347.079 kb on + strand at 3347.079 kb on + strand at 3347.082 kb on - strand at 3347.087 kb on - strand at 3347.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,342,538 - MPMX20_03178 0.70 +0.0 3,342,538 - MPMX20_03178 0.70 -0.6 3,342,577 - MPMX20_03178 0.72 +2.3 3,342,584 + MPMX20_03178 0.72 -1.1 3,342,707 + MPMX20_03178 0.76 -1.3 3,342,707 + MPMX20_03178 0.76 -0.8 3,342,707 + MPMX20_03178 0.76 -1.5 3,342,715 - MPMX20_03178 0.76 -2.3 3,342,715 - MPMX20_03178 0.76 +1.3 3,342,760 - MPMX20_03178 0.78 -0.1 3,342,773 - MPMX20_03178 0.78 +0.5 3,342,788 + MPMX20_03178 0.79 -3.2 3,342,788 + MPMX20_03178 0.79 -1.3 3,342,908 + MPMX20_03178 0.83 -0.5 3,342,908 + MPMX20_03178 0.83 +0.3 3,342,916 - MPMX20_03178 0.83 +0.7 3,342,916 - MPMX20_03178 0.83 -2.4 3,342,916 - MPMX20_03178 0.83 -0.2 3,342,916 - MPMX20_03178 0.83 -2.1 3,342,916 - MPMX20_03178 0.83 -0.4 3,342,916 - MPMX20_03178 0.83 -1.7 3,342,957 + MPMX20_03178 0.85 +0.9 3,343,006 - MPMX20_03178 0.87 +1.6 3,343,046 + MPMX20_03178 0.88 -2.5 3,343,054 - MPMX20_03178 0.88 -2.3 3,343,149 + -2.4 3,343,198 + -1.1 3,343,206 - +0.5 3,343,206 - +1.1 3,343,222 - +6.4 3,343,431 - -1.7 3,343,611 + -0.5 3,343,633 + -0.3 3,343,639 + +0.3 3,343,645 - +3.6 3,346,221 + +1.3 3,346,221 + -0.5 3,347,064 + -1.6 3,347,072 - +0.4 3,347,079 + +0.1 3,347,079 + +1.3 3,347,079 + -0.6 3,347,082 - -1.6 3,347,087 - -1.3 3,347,087 - -2.0
Or see this region's nucleotide sequence