Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03079 and MPMX20_03080 are separated by 36 nucleotides MPMX20_03080 and MPMX20_03081 are separated by 70 nucleotides
MPMX20_03079: MPMX20_03079 - L-2,4-diaminobutyrate decarboxylase, at 3,229,615 to 3,231,081
_03079
MPMX20_03080: MPMX20_03080 - Thiol-disulfide oxidoreductase ResA, at 3,231,118 to 3,231,633
_03080
MPMX20_03081: MPMX20_03081 - Hydrogen peroxide-inducible genes activator, at 3,231,704 to 3,232,621
_03081
Position (kb)
3231
3232 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 3230.126 kb on - strand, within MPMX20_03079 at 3230.223 kb on - strand, within MPMX20_03079 at 3230.224 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.359 kb on - strand, within MPMX20_03079 at 3230.365 kb on - strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.451 kb on - strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.465 kb on + strand, within MPMX20_03079 at 3230.465 kb on + strand, within MPMX20_03079 at 3230.466 kb on - strand, within MPMX20_03079 at 3230.468 kb on - strand, within MPMX20_03079 at 3230.468 kb on - strand, within MPMX20_03079 at 3230.493 kb on - strand, within MPMX20_03079 at 3230.494 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.533 kb on + strand, within MPMX20_03079 at 3230.541 kb on + strand, within MPMX20_03079 at 3230.556 kb on - strand, within MPMX20_03079 at 3230.561 kb on + strand, within MPMX20_03079 at 3230.588 kb on + strand, within MPMX20_03079 at 3230.588 kb on + strand, within MPMX20_03079 at 3230.664 kb on + strand, within MPMX20_03079 at 3230.731 kb on + strand, within MPMX20_03079 at 3230.936 kb on - strand at 3230.971 kb on + strand at 3230.976 kb on + strand at 3231.086 kb on - strand at 3231.111 kb on - strand at 3231.116 kb on + strand at 3231.124 kb on - strand at 3231.128 kb on + strand at 3231.128 kb on + strand at 3231.128 kb on + strand at 3231.128 kb on + strand at 3231.128 kb on + strand at 3231.128 kb on + strand at 3231.131 kb on - strand at 3231.136 kb on - strand at 3231.142 kb on + strand at 3231.169 kb on - strand at 3231.171 kb on - strand, within MPMX20_03080 at 3231.182 kb on - strand, within MPMX20_03080 at 3231.187 kb on - strand, within MPMX20_03080 at 3231.219 kb on + strand, within MPMX20_03080 at 3231.227 kb on - strand, within MPMX20_03080 at 3231.227 kb on - strand, within MPMX20_03080 at 3231.239 kb on + strand, within MPMX20_03080 at 3231.343 kb on + strand, within MPMX20_03080 at 3231.414 kb on + strand, within MPMX20_03080 at 3231.493 kb on + strand, within MPMX20_03080 at 3231.498 kb on + strand, within MPMX20_03080 at 3231.511 kb on - strand, within MPMX20_03080 at 3231.512 kb on - strand, within MPMX20_03080 at 3231.514 kb on + strand, within MPMX20_03080 at 3231.528 kb on - strand, within MPMX20_03080 at 3231.548 kb on + strand, within MPMX20_03080 at 3231.696 kb on - strand at 3231.797 kb on + strand, within MPMX20_03081 at 3231.805 kb on - strand, within MPMX20_03081 at 3231.828 kb on - strand, within MPMX20_03081 at 3231.828 kb on - strand, within MPMX20_03081 at 3231.828 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.896 kb on + strand, within MPMX20_03081 at 3232.048 kb on - strand, within MPMX20_03081 at 3232.137 kb on + strand, within MPMX20_03081 at 3232.145 kb on - strand, within MPMX20_03081 at 3232.184 kb on - strand, within MPMX20_03081 at 3232.294 kb on + strand, within MPMX20_03081 at 3232.328 kb on + strand, within MPMX20_03081 at 3232.336 kb on - strand, within MPMX20_03081 at 3232.364 kb on - strand, within MPMX20_03081 at 3232.374 kb on - strand, within MPMX20_03081 at 3232.417 kb on - strand, within MPMX20_03081 at 3232.501 kb on - strand, within MPMX20_03081 at 3232.501 kb on - strand, within MPMX20_03081 at 3232.552 kb on + strand at 3232.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,230,126 - MPMX20_03079 0.35 +7.9 3,230,223 - MPMX20_03079 0.41 +8.0 3,230,224 + MPMX20_03079 0.42 +9.0 3,230,310 + MPMX20_03079 0.47 +9.3 3,230,310 + MPMX20_03079 0.47 +8.0 3,230,310 + MPMX20_03079 0.47 +7.2 3,230,359 - MPMX20_03079 0.51 +7.6 3,230,365 - MPMX20_03079 0.51 +8.5 3,230,443 + MPMX20_03079 0.56 +7.7 3,230,443 + MPMX20_03079 0.56 +8.0 3,230,443 + MPMX20_03079 0.56 +7.8 3,230,451 - MPMX20_03079 0.57 +3.8 3,230,460 + MPMX20_03079 0.58 +8.5 3,230,460 + MPMX20_03079 0.58 +8.8 3,230,460 + MPMX20_03079 0.58 +8.1 3,230,465 + MPMX20_03079 0.58 +7.6 3,230,465 + MPMX20_03079 0.58 +9.2 3,230,466 - MPMX20_03079 0.58 +8.4 3,230,468 - MPMX20_03079 0.58 +7.4 3,230,468 - MPMX20_03079 0.58 +8.3 3,230,493 - MPMX20_03079 0.60 +8.1 3,230,494 - MPMX20_03079 0.60 +7.2 3,230,503 - MPMX20_03079 0.61 +6.3 3,230,503 - MPMX20_03079 0.61 +8.5 3,230,503 - MPMX20_03079 0.61 +7.2 3,230,533 + MPMX20_03079 0.63 +9.0 3,230,541 + MPMX20_03079 0.63 +8.6 3,230,556 - MPMX20_03079 0.64 +7.7 3,230,561 + MPMX20_03079 0.64 +8.0 3,230,588 + MPMX20_03079 0.66 +9.0 3,230,588 + MPMX20_03079 0.66 +9.2 3,230,664 + MPMX20_03079 0.72 +9.0 3,230,731 + MPMX20_03079 0.76 +7.6 3,230,936 - +8.4 3,230,971 + +10.2 3,230,976 + +8.2 3,231,086 - +0.3 3,231,111 - -0.4 3,231,116 + -0.3 3,231,124 - +0.5 3,231,128 + -0.1 3,231,128 + -3.7 3,231,128 + -0.2 3,231,128 + -0.8 3,231,128 + -0.5 3,231,128 + -0.8 3,231,131 - -0.3 3,231,136 - +0.1 3,231,142 + +0.8 3,231,169 - -0.8 3,231,171 - MPMX20_03080 0.10 -1.4 3,231,182 - MPMX20_03080 0.12 +1.6 3,231,187 - MPMX20_03080 0.13 +0.4 3,231,219 + MPMX20_03080 0.20 +0.4 3,231,227 - MPMX20_03080 0.21 -1.5 3,231,227 - MPMX20_03080 0.21 -0.8 3,231,239 + MPMX20_03080 0.23 -2.9 3,231,343 + MPMX20_03080 0.44 -1.1 3,231,414 + MPMX20_03080 0.57 -0.8 3,231,493 + MPMX20_03080 0.73 +0.2 3,231,498 + MPMX20_03080 0.74 -3.2 3,231,511 - MPMX20_03080 0.76 -1.3 3,231,512 - MPMX20_03080 0.76 +1.4 3,231,514 + MPMX20_03080 0.77 +0.0 3,231,528 - MPMX20_03080 0.79 -0.5 3,231,548 + MPMX20_03080 0.83 -4.5 3,231,696 - +1.8 3,231,797 + MPMX20_03081 0.10 -2.1 3,231,805 - MPMX20_03081 0.11 -0.7 3,231,828 - MPMX20_03081 0.14 -0.0 3,231,828 - MPMX20_03081 0.14 +0.9 3,231,828 - MPMX20_03081 0.14 -0.8 3,231,833 - MPMX20_03081 0.14 +0.2 3,231,833 - MPMX20_03081 0.14 +2.4 3,231,833 - MPMX20_03081 0.14 -0.4 3,231,833 - MPMX20_03081 0.14 +0.6 3,231,833 - MPMX20_03081 0.14 -2.4 3,231,833 - MPMX20_03081 0.14 -0.4 3,231,855 + MPMX20_03081 0.16 +0.7 3,231,855 + MPMX20_03081 0.16 +0.8 3,231,855 + MPMX20_03081 0.16 -0.2 3,231,855 + MPMX20_03081 0.16 +0.7 3,231,855 + MPMX20_03081 0.16 -2.3 3,231,855 + MPMX20_03081 0.16 -1.0 3,231,855 + MPMX20_03081 0.16 +1.4 3,231,855 + MPMX20_03081 0.16 -3.3 3,231,855 + MPMX20_03081 0.16 -0.8 3,231,855 + MPMX20_03081 0.16 -2.6 3,231,855 + MPMX20_03081 0.16 -1.4 3,231,855 + MPMX20_03081 0.16 -0.2 3,231,855 + MPMX20_03081 0.16 -3.3 3,231,855 + MPMX20_03081 0.16 -1.1 3,231,855 + MPMX20_03081 0.16 -0.7 3,231,863 - MPMX20_03081 0.17 +0.4 3,231,863 - MPMX20_03081 0.17 -0.6 3,231,863 - MPMX20_03081 0.17 -2.3 3,231,863 - MPMX20_03081 0.17 -1.9 3,231,863 - MPMX20_03081 0.17 -0.2 3,231,863 - MPMX20_03081 0.17 -1.9 3,231,863 - MPMX20_03081 0.17 -2.4 3,231,863 - MPMX20_03081 0.17 -0.2 3,231,863 - MPMX20_03081 0.17 +0.7 3,231,863 - MPMX20_03081 0.17 -0.3 3,231,896 + MPMX20_03081 0.21 -2.5 3,232,048 - MPMX20_03081 0.37 -2.5 3,232,137 + MPMX20_03081 0.47 +2.3 3,232,145 - MPMX20_03081 0.48 +3.9 3,232,184 - MPMX20_03081 0.52 -1.1 3,232,294 + MPMX20_03081 0.64 +2.4 3,232,328 + MPMX20_03081 0.68 +0.6 3,232,336 - MPMX20_03081 0.69 +0.2 3,232,364 - MPMX20_03081 0.72 -0.3 3,232,374 - MPMX20_03081 0.73 +2.4 3,232,417 - MPMX20_03081 0.78 +0.1 3,232,501 - MPMX20_03081 0.87 -1.5 3,232,501 - MPMX20_03081 0.87 -0.4 3,232,552 + -1.0 3,232,576 - -0.8
Or see this region's nucleotide sequence