Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03080

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03079 and MPMX20_03080 are separated by 36 nucleotidesMPMX20_03080 and MPMX20_03081 are separated by 70 nucleotides MPMX20_03079: MPMX20_03079 - L-2,4-diaminobutyrate decarboxylase, at 3,229,615 to 3,231,081 _03079 MPMX20_03080: MPMX20_03080 - Thiol-disulfide oxidoreductase ResA, at 3,231,118 to 3,231,633 _03080 MPMX20_03081: MPMX20_03081 - Hydrogen peroxide-inducible genes activator, at 3,231,704 to 3,232,621 _03081 Position (kb) 3231 3232Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 3230.126 kb on - strand, within MPMX20_03079at 3230.223 kb on - strand, within MPMX20_03079at 3230.224 kb on + strand, within MPMX20_03079at 3230.310 kb on + strand, within MPMX20_03079at 3230.310 kb on + strand, within MPMX20_03079at 3230.310 kb on + strand, within MPMX20_03079at 3230.359 kb on - strand, within MPMX20_03079at 3230.365 kb on - strand, within MPMX20_03079at 3230.443 kb on + strand, within MPMX20_03079at 3230.443 kb on + strand, within MPMX20_03079at 3230.443 kb on + strand, within MPMX20_03079at 3230.451 kb on - strand, within MPMX20_03079at 3230.460 kb on + strand, within MPMX20_03079at 3230.460 kb on + strand, within MPMX20_03079at 3230.460 kb on + strand, within MPMX20_03079at 3230.465 kb on + strand, within MPMX20_03079at 3230.465 kb on + strand, within MPMX20_03079at 3230.466 kb on - strand, within MPMX20_03079at 3230.468 kb on - strand, within MPMX20_03079at 3230.468 kb on - strand, within MPMX20_03079at 3230.493 kb on - strand, within MPMX20_03079at 3230.494 kb on - strand, within MPMX20_03079at 3230.503 kb on - strand, within MPMX20_03079at 3230.503 kb on - strand, within MPMX20_03079at 3230.503 kb on - strand, within MPMX20_03079at 3230.533 kb on + strand, within MPMX20_03079at 3230.541 kb on + strand, within MPMX20_03079at 3230.556 kb on - strand, within MPMX20_03079at 3230.561 kb on + strand, within MPMX20_03079at 3230.588 kb on + strand, within MPMX20_03079at 3230.588 kb on + strand, within MPMX20_03079at 3230.664 kb on + strand, within MPMX20_03079at 3230.731 kb on + strand, within MPMX20_03079at 3230.936 kb on - strandat 3230.971 kb on + strandat 3230.976 kb on + strandat 3231.086 kb on - strandat 3231.111 kb on - strandat 3231.116 kb on + strandat 3231.124 kb on - strandat 3231.128 kb on + strandat 3231.128 kb on + strandat 3231.128 kb on + strandat 3231.128 kb on + strandat 3231.128 kb on + strandat 3231.128 kb on + strandat 3231.131 kb on - strandat 3231.136 kb on - strandat 3231.142 kb on + strandat 3231.169 kb on - strandat 3231.171 kb on - strand, within MPMX20_03080at 3231.182 kb on - strand, within MPMX20_03080at 3231.187 kb on - strand, within MPMX20_03080at 3231.219 kb on + strand, within MPMX20_03080at 3231.227 kb on - strand, within MPMX20_03080at 3231.227 kb on - strand, within MPMX20_03080at 3231.239 kb on + strand, within MPMX20_03080at 3231.343 kb on + strand, within MPMX20_03080at 3231.414 kb on + strand, within MPMX20_03080at 3231.493 kb on + strand, within MPMX20_03080at 3231.498 kb on + strand, within MPMX20_03080at 3231.511 kb on - strand, within MPMX20_03080at 3231.512 kb on - strand, within MPMX20_03080at 3231.514 kb on + strand, within MPMX20_03080at 3231.528 kb on - strand, within MPMX20_03080at 3231.548 kb on + strand, within MPMX20_03080at 3231.696 kb on - strandat 3231.797 kb on + strand, within MPMX20_03081at 3231.805 kb on - strand, within MPMX20_03081at 3231.828 kb on - strand, within MPMX20_03081at 3231.828 kb on - strand, within MPMX20_03081at 3231.828 kb on - strand, within MPMX20_03081at 3231.833 kb on - strand, within MPMX20_03081at 3231.833 kb on - strand, within MPMX20_03081at 3231.833 kb on - strand, within MPMX20_03081at 3231.833 kb on - strand, within MPMX20_03081at 3231.833 kb on - strand, within MPMX20_03081at 3231.833 kb on - strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.855 kb on + strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.863 kb on - strand, within MPMX20_03081at 3231.896 kb on + strand, within MPMX20_03081at 3232.048 kb on - strand, within MPMX20_03081at 3232.137 kb on + strand, within MPMX20_03081at 3232.145 kb on - strand, within MPMX20_03081at 3232.184 kb on - strand, within MPMX20_03081at 3232.294 kb on + strand, within MPMX20_03081at 3232.328 kb on + strand, within MPMX20_03081at 3232.336 kb on - strand, within MPMX20_03081at 3232.364 kb on - strand, within MPMX20_03081at 3232.374 kb on - strand, within MPMX20_03081at 3232.417 kb on - strand, within MPMX20_03081at 3232.501 kb on - strand, within MPMX20_03081at 3232.501 kb on - strand, within MPMX20_03081at 3232.552 kb on + strandat 3232.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,230,126 - MPMX20_03079 0.35 +7.9
3,230,223 - MPMX20_03079 0.41 +8.0
3,230,224 + MPMX20_03079 0.42 +9.0
3,230,310 + MPMX20_03079 0.47 +9.3
3,230,310 + MPMX20_03079 0.47 +8.0
3,230,310 + MPMX20_03079 0.47 +7.2
3,230,359 - MPMX20_03079 0.51 +7.6
3,230,365 - MPMX20_03079 0.51 +8.5
3,230,443 + MPMX20_03079 0.56 +7.7
3,230,443 + MPMX20_03079 0.56 +8.0
3,230,443 + MPMX20_03079 0.56 +7.8
3,230,451 - MPMX20_03079 0.57 +3.8
3,230,460 + MPMX20_03079 0.58 +8.5
3,230,460 + MPMX20_03079 0.58 +8.8
3,230,460 + MPMX20_03079 0.58 +8.1
3,230,465 + MPMX20_03079 0.58 +7.6
3,230,465 + MPMX20_03079 0.58 +9.2
3,230,466 - MPMX20_03079 0.58 +8.4
3,230,468 - MPMX20_03079 0.58 +7.4
3,230,468 - MPMX20_03079 0.58 +8.3
3,230,493 - MPMX20_03079 0.60 +8.1
3,230,494 - MPMX20_03079 0.60 +7.2
3,230,503 - MPMX20_03079 0.61 +6.3
3,230,503 - MPMX20_03079 0.61 +8.5
3,230,503 - MPMX20_03079 0.61 +7.2
3,230,533 + MPMX20_03079 0.63 +9.0
3,230,541 + MPMX20_03079 0.63 +8.6
3,230,556 - MPMX20_03079 0.64 +7.7
3,230,561 + MPMX20_03079 0.64 +8.0
3,230,588 + MPMX20_03079 0.66 +9.0
3,230,588 + MPMX20_03079 0.66 +9.2
3,230,664 + MPMX20_03079 0.72 +9.0
3,230,731 + MPMX20_03079 0.76 +7.6
3,230,936 - +8.4
3,230,971 + +10.2
3,230,976 + +8.2
3,231,086 - +0.3
3,231,111 - -0.4
3,231,116 + -0.3
3,231,124 - +0.5
3,231,128 + -0.1
3,231,128 + -3.7
3,231,128 + -0.2
3,231,128 + -0.8
3,231,128 + -0.5
3,231,128 + -0.8
3,231,131 - -0.3
3,231,136 - +0.1
3,231,142 + +0.8
3,231,169 - -0.8
3,231,171 - MPMX20_03080 0.10 -1.4
3,231,182 - MPMX20_03080 0.12 +1.6
3,231,187 - MPMX20_03080 0.13 +0.4
3,231,219 + MPMX20_03080 0.20 +0.4
3,231,227 - MPMX20_03080 0.21 -1.5
3,231,227 - MPMX20_03080 0.21 -0.8
3,231,239 + MPMX20_03080 0.23 -2.9
3,231,343 + MPMX20_03080 0.44 -1.1
3,231,414 + MPMX20_03080 0.57 -0.8
3,231,493 + MPMX20_03080 0.73 +0.2
3,231,498 + MPMX20_03080 0.74 -3.2
3,231,511 - MPMX20_03080 0.76 -1.3
3,231,512 - MPMX20_03080 0.76 +1.4
3,231,514 + MPMX20_03080 0.77 +0.0
3,231,528 - MPMX20_03080 0.79 -0.5
3,231,548 + MPMX20_03080 0.83 -4.5
3,231,696 - +1.8
3,231,797 + MPMX20_03081 0.10 -2.1
3,231,805 - MPMX20_03081 0.11 -0.7
3,231,828 - MPMX20_03081 0.14 -0.0
3,231,828 - MPMX20_03081 0.14 +0.9
3,231,828 - MPMX20_03081 0.14 -0.8
3,231,833 - MPMX20_03081 0.14 +0.2
3,231,833 - MPMX20_03081 0.14 +2.4
3,231,833 - MPMX20_03081 0.14 -0.4
3,231,833 - MPMX20_03081 0.14 +0.6
3,231,833 - MPMX20_03081 0.14 -2.4
3,231,833 - MPMX20_03081 0.14 -0.4
3,231,855 + MPMX20_03081 0.16 +0.7
3,231,855 + MPMX20_03081 0.16 +0.8
3,231,855 + MPMX20_03081 0.16 -0.2
3,231,855 + MPMX20_03081 0.16 +0.7
3,231,855 + MPMX20_03081 0.16 -2.3
3,231,855 + MPMX20_03081 0.16 -1.0
3,231,855 + MPMX20_03081 0.16 +1.4
3,231,855 + MPMX20_03081 0.16 -3.3
3,231,855 + MPMX20_03081 0.16 -0.8
3,231,855 + MPMX20_03081 0.16 -2.6
3,231,855 + MPMX20_03081 0.16 -1.4
3,231,855 + MPMX20_03081 0.16 -0.2
3,231,855 + MPMX20_03081 0.16 -3.3
3,231,855 + MPMX20_03081 0.16 -1.1
3,231,855 + MPMX20_03081 0.16 -0.7
3,231,863 - MPMX20_03081 0.17 +0.4
3,231,863 - MPMX20_03081 0.17 -0.6
3,231,863 - MPMX20_03081 0.17 -2.3
3,231,863 - MPMX20_03081 0.17 -1.9
3,231,863 - MPMX20_03081 0.17 -0.2
3,231,863 - MPMX20_03081 0.17 -1.9
3,231,863 - MPMX20_03081 0.17 -2.4
3,231,863 - MPMX20_03081 0.17 -0.2
3,231,863 - MPMX20_03081 0.17 +0.7
3,231,863 - MPMX20_03081 0.17 -0.3
3,231,896 + MPMX20_03081 0.21 -2.5
3,232,048 - MPMX20_03081 0.37 -2.5
3,232,137 + MPMX20_03081 0.47 +2.3
3,232,145 - MPMX20_03081 0.48 +3.9
3,232,184 - MPMX20_03081 0.52 -1.1
3,232,294 + MPMX20_03081 0.64 +2.4
3,232,328 + MPMX20_03081 0.68 +0.6
3,232,336 - MPMX20_03081 0.69 +0.2
3,232,364 - MPMX20_03081 0.72 -0.3
3,232,374 - MPMX20_03081 0.73 +2.4
3,232,417 - MPMX20_03081 0.78 +0.1
3,232,501 - MPMX20_03081 0.87 -1.5
3,232,501 - MPMX20_03081 0.87 -0.4
3,232,552 + -1.0
3,232,576 - -0.8

Or see this region's nucleotide sequence