Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02676 and MPMX20_02677 are separated by 11 nucleotides MPMX20_02677 and MPMX20_02678 are separated by 16 nucleotides
MPMX20_02676: MPMX20_02676 - hypothetical protein, at 2,823,282 to 2,824,298
_02676
MPMX20_02677: MPMX20_02677 - hypothetical protein, at 2,824,310 to 2,825,026
_02677
MPMX20_02678: MPMX20_02678 - hypothetical protein, at 2,825,043 to 2,828,663
_02678
Position (kb)
2824
2825
2826 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2823.322 kb on - strand at 2823.322 kb on - strand at 2823.405 kb on - strand, within MPMX20_02676 at 2823.424 kb on + strand, within MPMX20_02676 at 2823.425 kb on - strand, within MPMX20_02676 at 2823.455 kb on + strand, within MPMX20_02676 at 2823.512 kb on - strand, within MPMX20_02676 at 2823.541 kb on + strand, within MPMX20_02676 at 2823.541 kb on + strand, within MPMX20_02676 at 2823.578 kb on - strand, within MPMX20_02676 at 2823.670 kb on - strand, within MPMX20_02676 at 2823.730 kb on - strand, within MPMX20_02676 at 2823.767 kb on + strand, within MPMX20_02676 at 2823.775 kb on - strand, within MPMX20_02676 at 2823.904 kb on - strand, within MPMX20_02676 at 2824.077 kb on - strand, within MPMX20_02676 at 2824.099 kb on - strand, within MPMX20_02676 at 2824.158 kb on - strand, within MPMX20_02676 at 2824.184 kb on + strand, within MPMX20_02676 at 2824.197 kb on - strand at 2824.197 kb on - strand at 2824.202 kb on - strand at 2824.202 kb on - strand at 2824.235 kb on + strand at 2824.260 kb on + strand at 2824.301 kb on + strand at 2824.388 kb on - strand, within MPMX20_02677 at 2824.411 kb on + strand, within MPMX20_02677 at 2824.426 kb on - strand, within MPMX20_02677 at 2824.477 kb on + strand, within MPMX20_02677 at 2824.500 kb on + strand, within MPMX20_02677 at 2824.500 kb on + strand, within MPMX20_02677 at 2824.508 kb on - strand, within MPMX20_02677 at 2824.508 kb on - strand, within MPMX20_02677 at 2824.508 kb on - strand, within MPMX20_02677 at 2824.543 kb on + strand, within MPMX20_02677 at 2824.699 kb on + strand, within MPMX20_02677 at 2824.725 kb on + strand, within MPMX20_02677 at 2824.732 kb on + strand, within MPMX20_02677 at 2824.733 kb on - strand, within MPMX20_02677 at 2824.740 kb on - strand, within MPMX20_02677 at 2824.905 kb on + strand, within MPMX20_02677 at 2824.913 kb on - strand, within MPMX20_02677 at 2824.979 kb on - strand at 2824.985 kb on + strand at 2825.117 kb on - strand at 2825.144 kb on + strand at 2825.230 kb on - strand at 2825.249 kb on - strand at 2825.262 kb on + strand at 2825.267 kb on + strand at 2825.270 kb on - strand at 2825.352 kb on - strand at 2825.368 kb on - strand at 2825.379 kb on - strand at 2825.381 kb on + strand at 2825.589 kb on - strand, within MPMX20_02678 at 2825.755 kb on - strand, within MPMX20_02678 at 2825.763 kb on - strand, within MPMX20_02678 at 2825.787 kb on + strand, within MPMX20_02678 at 2825.810 kb on - strand, within MPMX20_02678 at 2825.823 kb on - strand, within MPMX20_02678 at 2825.990 kb on - strand, within MPMX20_02678 at 2826.019 kb on - strand, within MPMX20_02678
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,823,322 - +1.7 2,823,322 - +4.4 2,823,405 - MPMX20_02676 0.12 +2.6 2,823,424 + MPMX20_02676 0.14 +2.9 2,823,425 - MPMX20_02676 0.14 +3.7 2,823,455 + MPMX20_02676 0.17 +4.3 2,823,512 - MPMX20_02676 0.23 +3.6 2,823,541 + MPMX20_02676 0.25 +3.5 2,823,541 + MPMX20_02676 0.25 +2.3 2,823,578 - MPMX20_02676 0.29 +3.7 2,823,670 - MPMX20_02676 0.38 +4.2 2,823,730 - MPMX20_02676 0.44 +2.4 2,823,767 + MPMX20_02676 0.48 +1.4 2,823,775 - MPMX20_02676 0.48 +3.5 2,823,904 - MPMX20_02676 0.61 +3.8 2,824,077 - MPMX20_02676 0.78 +2.4 2,824,099 - MPMX20_02676 0.80 +4.3 2,824,158 - MPMX20_02676 0.86 +5.0 2,824,184 + MPMX20_02676 0.89 +4.1 2,824,197 - +2.7 2,824,197 - +2.7 2,824,202 - +4.1 2,824,202 - +3.6 2,824,235 + +4.4 2,824,260 + +3.0 2,824,301 + +0.8 2,824,388 - MPMX20_02677 0.11 +2.3 2,824,411 + MPMX20_02677 0.14 +3.0 2,824,426 - MPMX20_02677 0.16 +1.9 2,824,477 + MPMX20_02677 0.23 +1.9 2,824,500 + MPMX20_02677 0.26 +2.4 2,824,500 + MPMX20_02677 0.26 +1.8 2,824,508 - MPMX20_02677 0.28 +0.6 2,824,508 - MPMX20_02677 0.28 -1.1 2,824,508 - MPMX20_02677 0.28 +0.1 2,824,543 + MPMX20_02677 0.32 +0.1 2,824,699 + MPMX20_02677 0.54 -0.0 2,824,725 + MPMX20_02677 0.58 +3.1 2,824,732 + MPMX20_02677 0.59 +2.7 2,824,733 - MPMX20_02677 0.59 +0.4 2,824,740 - MPMX20_02677 0.60 +2.3 2,824,905 + MPMX20_02677 0.83 +4.6 2,824,913 - MPMX20_02677 0.84 +0.4 2,824,979 - +1.2 2,824,985 + +4.6 2,825,117 - +5.1 2,825,144 + +1.8 2,825,230 - +3.7 2,825,249 - +1.1 2,825,262 + +2.2 2,825,267 + +4.4 2,825,270 - +3.1 2,825,352 - +3.3 2,825,368 - +4.2 2,825,379 - +4.8 2,825,381 + +4.3 2,825,589 - MPMX20_02678 0.15 +4.3 2,825,755 - MPMX20_02678 0.20 +3.1 2,825,763 - MPMX20_02678 0.20 +3.8 2,825,787 + MPMX20_02678 0.21 +2.5 2,825,810 - MPMX20_02678 0.21 +2.6 2,825,823 - MPMX20_02678 0.22 +4.1 2,825,990 - MPMX20_02678 0.26 +4.2 2,826,019 - MPMX20_02678 0.27 +3.2
Or see this region's nucleotide sequence