Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02677

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02676 and MPMX20_02677 are separated by 11 nucleotidesMPMX20_02677 and MPMX20_02678 are separated by 16 nucleotides MPMX20_02676: MPMX20_02676 - hypothetical protein, at 2,823,282 to 2,824,298 _02676 MPMX20_02677: MPMX20_02677 - hypothetical protein, at 2,824,310 to 2,825,026 _02677 MPMX20_02678: MPMX20_02678 - hypothetical protein, at 2,825,043 to 2,828,663 _02678 Position (kb) 2824 2825 2826Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2823.322 kb on - strandat 2823.322 kb on - strandat 2823.405 kb on - strand, within MPMX20_02676at 2823.424 kb on + strand, within MPMX20_02676at 2823.425 kb on - strand, within MPMX20_02676at 2823.455 kb on + strand, within MPMX20_02676at 2823.512 kb on - strand, within MPMX20_02676at 2823.541 kb on + strand, within MPMX20_02676at 2823.541 kb on + strand, within MPMX20_02676at 2823.578 kb on - strand, within MPMX20_02676at 2823.670 kb on - strand, within MPMX20_02676at 2823.730 kb on - strand, within MPMX20_02676at 2823.767 kb on + strand, within MPMX20_02676at 2823.775 kb on - strand, within MPMX20_02676at 2823.904 kb on - strand, within MPMX20_02676at 2824.077 kb on - strand, within MPMX20_02676at 2824.099 kb on - strand, within MPMX20_02676at 2824.158 kb on - strand, within MPMX20_02676at 2824.184 kb on + strand, within MPMX20_02676at 2824.197 kb on - strandat 2824.197 kb on - strandat 2824.202 kb on - strandat 2824.202 kb on - strandat 2824.235 kb on + strandat 2824.260 kb on + strandat 2824.301 kb on + strandat 2824.388 kb on - strand, within MPMX20_02677at 2824.411 kb on + strand, within MPMX20_02677at 2824.426 kb on - strand, within MPMX20_02677at 2824.477 kb on + strand, within MPMX20_02677at 2824.500 kb on + strand, within MPMX20_02677at 2824.500 kb on + strand, within MPMX20_02677at 2824.508 kb on - strand, within MPMX20_02677at 2824.508 kb on - strand, within MPMX20_02677at 2824.508 kb on - strand, within MPMX20_02677at 2824.543 kb on + strand, within MPMX20_02677at 2824.699 kb on + strand, within MPMX20_02677at 2824.725 kb on + strand, within MPMX20_02677at 2824.732 kb on + strand, within MPMX20_02677at 2824.733 kb on - strand, within MPMX20_02677at 2824.740 kb on - strand, within MPMX20_02677at 2824.905 kb on + strand, within MPMX20_02677at 2824.913 kb on - strand, within MPMX20_02677at 2824.979 kb on - strandat 2824.985 kb on + strandat 2825.117 kb on - strandat 2825.144 kb on + strandat 2825.230 kb on - strandat 2825.249 kb on - strandat 2825.262 kb on + strandat 2825.267 kb on + strandat 2825.270 kb on - strandat 2825.352 kb on - strandat 2825.368 kb on - strandat 2825.379 kb on - strandat 2825.381 kb on + strandat 2825.589 kb on - strand, within MPMX20_02678at 2825.755 kb on - strand, within MPMX20_02678at 2825.763 kb on - strand, within MPMX20_02678at 2825.787 kb on + strand, within MPMX20_02678at 2825.810 kb on - strand, within MPMX20_02678at 2825.823 kb on - strand, within MPMX20_02678at 2825.990 kb on - strand, within MPMX20_02678at 2826.019 kb on - strand, within MPMX20_02678

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,823,322 - +1.7
2,823,322 - +4.4
2,823,405 - MPMX20_02676 0.12 +2.6
2,823,424 + MPMX20_02676 0.14 +2.9
2,823,425 - MPMX20_02676 0.14 +3.7
2,823,455 + MPMX20_02676 0.17 +4.3
2,823,512 - MPMX20_02676 0.23 +3.6
2,823,541 + MPMX20_02676 0.25 +3.5
2,823,541 + MPMX20_02676 0.25 +2.3
2,823,578 - MPMX20_02676 0.29 +3.7
2,823,670 - MPMX20_02676 0.38 +4.2
2,823,730 - MPMX20_02676 0.44 +2.4
2,823,767 + MPMX20_02676 0.48 +1.4
2,823,775 - MPMX20_02676 0.48 +3.5
2,823,904 - MPMX20_02676 0.61 +3.8
2,824,077 - MPMX20_02676 0.78 +2.4
2,824,099 - MPMX20_02676 0.80 +4.3
2,824,158 - MPMX20_02676 0.86 +5.0
2,824,184 + MPMX20_02676 0.89 +4.1
2,824,197 - +2.7
2,824,197 - +2.7
2,824,202 - +4.1
2,824,202 - +3.6
2,824,235 + +4.4
2,824,260 + +3.0
2,824,301 + +0.8
2,824,388 - MPMX20_02677 0.11 +2.3
2,824,411 + MPMX20_02677 0.14 +3.0
2,824,426 - MPMX20_02677 0.16 +1.9
2,824,477 + MPMX20_02677 0.23 +1.9
2,824,500 + MPMX20_02677 0.26 +2.4
2,824,500 + MPMX20_02677 0.26 +1.8
2,824,508 - MPMX20_02677 0.28 +0.6
2,824,508 - MPMX20_02677 0.28 -1.1
2,824,508 - MPMX20_02677 0.28 +0.1
2,824,543 + MPMX20_02677 0.32 +0.1
2,824,699 + MPMX20_02677 0.54 -0.0
2,824,725 + MPMX20_02677 0.58 +3.1
2,824,732 + MPMX20_02677 0.59 +2.7
2,824,733 - MPMX20_02677 0.59 +0.4
2,824,740 - MPMX20_02677 0.60 +2.3
2,824,905 + MPMX20_02677 0.83 +4.6
2,824,913 - MPMX20_02677 0.84 +0.4
2,824,979 - +1.2
2,824,985 + +4.6
2,825,117 - +5.1
2,825,144 + +1.8
2,825,230 - +3.7
2,825,249 - +1.1
2,825,262 + +2.2
2,825,267 + +4.4
2,825,270 - +3.1
2,825,352 - +3.3
2,825,368 - +4.2
2,825,379 - +4.8
2,825,381 + +4.3
2,825,589 - MPMX20_02678 0.15 +4.3
2,825,755 - MPMX20_02678 0.20 +3.1
2,825,763 - MPMX20_02678 0.20 +3.8
2,825,787 + MPMX20_02678 0.21 +2.5
2,825,810 - MPMX20_02678 0.21 +2.6
2,825,823 - MPMX20_02678 0.22 +4.1
2,825,990 - MPMX20_02678 0.26 +4.2
2,826,019 - MPMX20_02678 0.27 +3.2

Or see this region's nucleotide sequence