Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02662 and MPMX20_02663 are separated by 2 nucleotides MPMX20_02663 and MPMX20_02664 overlap by 8 nucleotides MPMX20_02664 and MPMX20_02665 are separated by 9 nucleotides
MPMX20_02662: MPMX20_02662 - hypothetical protein, at 2,810,933 to 2,812,804
_02662
MPMX20_02663: MPMX20_02663 - hypothetical protein, at 2,812,807 to 2,813,370
_02663
MPMX20_02664: MPMX20_02664 - hypothetical protein, at 2,813,363 to 2,814,175
_02664
MPMX20_02665: MPMX20_02665 - hypothetical protein, at 2,814,185 to 2,815,171
_02665
Position (kb)
2813
2814
2815 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2812.452 kb on - strand, within MPMX20_02662 at 2812.477 kb on + strand, within MPMX20_02662 at 2812.642 kb on - strand at 2812.668 kb on + strand at 2812.676 kb on - strand at 2812.705 kb on - strand at 2812.722 kb on + strand at 2812.722 kb on + strand at 2812.768 kb on + strand at 2812.877 kb on + strand, within MPMX20_02663 at 2812.879 kb on + strand, within MPMX20_02663 at 2812.935 kb on - strand, within MPMX20_02663 at 2812.958 kb on + strand, within MPMX20_02663 at 2813.021 kb on - strand, within MPMX20_02663 at 2813.021 kb on - strand, within MPMX20_02663 at 2813.099 kb on - strand, within MPMX20_02663 at 2813.109 kb on - strand, within MPMX20_02663 at 2813.124 kb on + strand, within MPMX20_02663 at 2813.125 kb on - strand, within MPMX20_02663 at 2813.127 kb on - strand, within MPMX20_02663 at 2813.158 kb on - strand, within MPMX20_02663 at 2813.355 kb on - strand at 2813.368 kb on - strand at 2813.372 kb on + strand at 2813.416 kb on + strand at 2813.450 kb on - strand, within MPMX20_02664 at 2813.720 kb on - strand, within MPMX20_02664 at 2813.777 kb on + strand, within MPMX20_02664 at 2813.803 kb on + strand, within MPMX20_02664 at 2813.883 kb on - strand, within MPMX20_02664 at 2813.919 kb on + strand, within MPMX20_02664 at 2813.927 kb on - strand, within MPMX20_02664 at 2813.954 kb on - strand, within MPMX20_02664 at 2813.968 kb on + strand, within MPMX20_02664 at 2813.985 kb on + strand, within MPMX20_02664 at 2814.025 kb on + strand, within MPMX20_02664 at 2814.099 kb on + strand at 2814.099 kb on + strand at 2814.162 kb on - strand at 2814.226 kb on + strand at 2814.240 kb on + strand at 2814.276 kb on - strand at 2814.404 kb on + strand, within MPMX20_02665 at 2814.454 kb on - strand, within MPMX20_02665 at 2814.477 kb on - strand, within MPMX20_02665 at 2814.517 kb on - strand, within MPMX20_02665 at 2814.653 kb on + strand, within MPMX20_02665 at 2814.663 kb on + strand, within MPMX20_02665 at 2814.663 kb on + strand, within MPMX20_02665 at 2814.676 kb on + strand, within MPMX20_02665 at 2814.699 kb on - strand, within MPMX20_02665 at 2814.774 kb on - strand, within MPMX20_02665 at 2814.842 kb on + strand, within MPMX20_02665 at 2814.842 kb on + strand, within MPMX20_02665 at 2814.850 kb on - strand, within MPMX20_02665 at 2814.900 kb on + strand, within MPMX20_02665 at 2814.958 kb on + strand, within MPMX20_02665 at 2815.034 kb on + strand, within MPMX20_02665 at 2815.034 kb on + strand, within MPMX20_02665 at 2815.082 kb on + strand at 2815.092 kb on - strand at 2815.125 kb on + strand at 2815.146 kb on + strand at 2815.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,812,452 - MPMX20_02662 0.81 +3.4 2,812,477 + MPMX20_02662 0.82 +3.2 2,812,642 - +4.8 2,812,668 + +5.2 2,812,676 - +3.3 2,812,705 - +2.2 2,812,722 + +4.5 2,812,722 + +1.1 2,812,768 + +1.7 2,812,877 + MPMX20_02663 0.12 +2.5 2,812,879 + MPMX20_02663 0.13 +2.3 2,812,935 - MPMX20_02663 0.23 +2.0 2,812,958 + MPMX20_02663 0.27 +3.1 2,813,021 - MPMX20_02663 0.38 +3.3 2,813,021 - MPMX20_02663 0.38 +3.3 2,813,099 - MPMX20_02663 0.52 +3.7 2,813,109 - MPMX20_02663 0.54 +4.2 2,813,124 + MPMX20_02663 0.56 +0.1 2,813,125 - MPMX20_02663 0.56 +5.0 2,813,127 - MPMX20_02663 0.57 +3.8 2,813,158 - MPMX20_02663 0.62 +4.2 2,813,355 - +4.7 2,813,368 - +2.4 2,813,372 + +0.9 2,813,416 + -0.1 2,813,450 - MPMX20_02664 0.11 +0.1 2,813,720 - MPMX20_02664 0.44 -0.1 2,813,777 + MPMX20_02664 0.51 +2.7 2,813,803 + MPMX20_02664 0.54 +0.1 2,813,883 - MPMX20_02664 0.64 +3.9 2,813,919 + MPMX20_02664 0.68 +0.9 2,813,927 - MPMX20_02664 0.69 +4.2 2,813,954 - MPMX20_02664 0.73 +2.5 2,813,968 + MPMX20_02664 0.74 +5.1 2,813,985 + MPMX20_02664 0.77 +1.7 2,814,025 + MPMX20_02664 0.81 +2.5 2,814,099 + +3.4 2,814,099 + +2.7 2,814,162 - +3.4 2,814,226 + +0.5 2,814,240 + +5.8 2,814,276 - +1.9 2,814,404 + MPMX20_02665 0.22 +4.1 2,814,454 - MPMX20_02665 0.27 +1.5 2,814,477 - MPMX20_02665 0.30 +1.7 2,814,517 - MPMX20_02665 0.34 +0.3 2,814,653 + MPMX20_02665 0.47 +2.5 2,814,663 + MPMX20_02665 0.48 +5.2 2,814,663 + MPMX20_02665 0.48 +3.1 2,814,676 + MPMX20_02665 0.50 +2.6 2,814,699 - MPMX20_02665 0.52 +3.2 2,814,774 - MPMX20_02665 0.60 +1.9 2,814,842 + MPMX20_02665 0.67 +4.0 2,814,842 + MPMX20_02665 0.67 +3.0 2,814,850 - MPMX20_02665 0.67 +3.2 2,814,900 + MPMX20_02665 0.72 +1.8 2,814,958 + MPMX20_02665 0.78 -1.5 2,815,034 + MPMX20_02665 0.86 -2.4 2,815,034 + MPMX20_02665 0.86 +3.7 2,815,082 + +3.5 2,815,092 - +2.0 2,815,125 + +2.0 2,815,146 + +1.5 2,815,173 - +4.8
Or see this region's nucleotide sequence