Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02663

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02662 and MPMX20_02663 are separated by 2 nucleotidesMPMX20_02663 and MPMX20_02664 overlap by 8 nucleotidesMPMX20_02664 and MPMX20_02665 are separated by 9 nucleotides MPMX20_02662: MPMX20_02662 - hypothetical protein, at 2,810,933 to 2,812,804 _02662 MPMX20_02663: MPMX20_02663 - hypothetical protein, at 2,812,807 to 2,813,370 _02663 MPMX20_02664: MPMX20_02664 - hypothetical protein, at 2,813,363 to 2,814,175 _02664 MPMX20_02665: MPMX20_02665 - hypothetical protein, at 2,814,185 to 2,815,171 _02665 Position (kb) 2812 2813 2814Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 2811.839 kb on - strand, within MPMX20_02662at 2811.963 kb on + strand, within MPMX20_02662at 2811.966 kb on - strand, within MPMX20_02662at 2811.971 kb on - strand, within MPMX20_02662at 2812.027 kb on + strand, within MPMX20_02662at 2812.104 kb on - strand, within MPMX20_02662at 2812.123 kb on - strand, within MPMX20_02662at 2812.301 kb on + strand, within MPMX20_02662at 2812.452 kb on - strand, within MPMX20_02662at 2812.477 kb on + strand, within MPMX20_02662at 2812.642 kb on - strandat 2812.668 kb on + strandat 2812.676 kb on - strandat 2812.705 kb on - strandat 2812.722 kb on + strandat 2812.722 kb on + strandat 2812.768 kb on + strandat 2812.877 kb on + strand, within MPMX20_02663at 2812.879 kb on + strand, within MPMX20_02663at 2812.935 kb on - strand, within MPMX20_02663at 2812.958 kb on + strand, within MPMX20_02663at 2813.021 kb on - strand, within MPMX20_02663at 2813.021 kb on - strand, within MPMX20_02663at 2813.099 kb on - strand, within MPMX20_02663at 2813.109 kb on - strand, within MPMX20_02663at 2813.124 kb on + strand, within MPMX20_02663at 2813.125 kb on - strand, within MPMX20_02663at 2813.127 kb on - strand, within MPMX20_02663at 2813.158 kb on - strand, within MPMX20_02663at 2813.355 kb on - strandat 2813.368 kb on - strandat 2813.372 kb on + strandat 2813.416 kb on + strandat 2813.450 kb on - strand, within MPMX20_02664at 2813.720 kb on - strand, within MPMX20_02664at 2813.777 kb on + strand, within MPMX20_02664at 2813.803 kb on + strand, within MPMX20_02664at 2813.883 kb on - strand, within MPMX20_02664at 2813.919 kb on + strand, within MPMX20_02664at 2813.927 kb on - strand, within MPMX20_02664at 2813.954 kb on - strand, within MPMX20_02664at 2813.968 kb on + strand, within MPMX20_02664at 2813.985 kb on + strand, within MPMX20_02664at 2814.025 kb on + strand, within MPMX20_02664at 2814.099 kb on + strandat 2814.099 kb on + strandat 2814.162 kb on - strandat 2814.226 kb on + strandat 2814.240 kb on + strandat 2814.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,811,839 - MPMX20_02662 0.48 +2.5
2,811,963 + MPMX20_02662 0.55 +1.5
2,811,966 - MPMX20_02662 0.55 +1.7
2,811,971 - MPMX20_02662 0.55 -0.1
2,812,027 + MPMX20_02662 0.58 +4.1
2,812,104 - MPMX20_02662 0.63 +3.3
2,812,123 - MPMX20_02662 0.64 +2.8
2,812,301 + MPMX20_02662 0.73 +4.9
2,812,452 - MPMX20_02662 0.81 +3.4
2,812,477 + MPMX20_02662 0.82 +3.2
2,812,642 - +4.8
2,812,668 + +5.2
2,812,676 - +3.3
2,812,705 - +2.2
2,812,722 + +4.5
2,812,722 + +1.1
2,812,768 + +1.7
2,812,877 + MPMX20_02663 0.12 +2.5
2,812,879 + MPMX20_02663 0.13 +2.3
2,812,935 - MPMX20_02663 0.23 +2.0
2,812,958 + MPMX20_02663 0.27 +3.1
2,813,021 - MPMX20_02663 0.38 +3.3
2,813,021 - MPMX20_02663 0.38 +3.3
2,813,099 - MPMX20_02663 0.52 +3.7
2,813,109 - MPMX20_02663 0.54 +4.2
2,813,124 + MPMX20_02663 0.56 +0.1
2,813,125 - MPMX20_02663 0.56 +5.0
2,813,127 - MPMX20_02663 0.57 +3.8
2,813,158 - MPMX20_02663 0.62 +4.2
2,813,355 - +4.7
2,813,368 - +2.4
2,813,372 + +0.9
2,813,416 + -0.1
2,813,450 - MPMX20_02664 0.11 +0.1
2,813,720 - MPMX20_02664 0.44 -0.1
2,813,777 + MPMX20_02664 0.51 +2.7
2,813,803 + MPMX20_02664 0.54 +0.1
2,813,883 - MPMX20_02664 0.64 +3.9
2,813,919 + MPMX20_02664 0.68 +0.9
2,813,927 - MPMX20_02664 0.69 +4.2
2,813,954 - MPMX20_02664 0.73 +2.5
2,813,968 + MPMX20_02664 0.74 +5.1
2,813,985 + MPMX20_02664 0.77 +1.7
2,814,025 + MPMX20_02664 0.81 +2.5
2,814,099 + +3.4
2,814,099 + +2.7
2,814,162 - +3.4
2,814,226 + +0.5
2,814,240 + +5.8
2,814,276 - +1.9

Or see this region's nucleotide sequence