Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02661 and MPMX20_02662 overlap by 4 nucleotides MPMX20_02662 and MPMX20_02663 are separated by 2 nucleotides MPMX20_02663 and MPMX20_02664 overlap by 8 nucleotides
MPMX20_02661: MPMX20_02661 - hypothetical protein, at 2,809,893 to 2,810,936
_02661
MPMX20_02662: MPMX20_02662 - hypothetical protein, at 2,810,933 to 2,812,804
_02662
MPMX20_02663: MPMX20_02663 - hypothetical protein, at 2,812,807 to 2,813,370
_02663
MPMX20_02664: MPMX20_02664 - hypothetical protein, at 2,813,363 to 2,814,175
_02664
Position (kb)
2810
2811
2812
2813 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 2809.933 kb on + strand at 2809.941 kb on - strand at 2809.941 kb on - strand at 2809.959 kb on + strand at 2809.967 kb on - strand at 2809.995 kb on + strand at 2809.995 kb on + strand at 2810.003 kb on - strand, within MPMX20_02661 at 2810.003 kb on - strand, within MPMX20_02661 at 2810.003 kb on - strand, within MPMX20_02661 at 2810.060 kb on + strand, within MPMX20_02661 at 2810.060 kb on + strand, within MPMX20_02661 at 2810.068 kb on - strand, within MPMX20_02661 at 2810.078 kb on + strand, within MPMX20_02661 at 2810.329 kb on + strand, within MPMX20_02661 at 2810.360 kb on - strand, within MPMX20_02661 at 2810.428 kb on - strand, within MPMX20_02661 at 2810.511 kb on - strand, within MPMX20_02661 at 2810.531 kb on + strand, within MPMX20_02661 at 2810.598 kb on + strand, within MPMX20_02661 at 2810.606 kb on - strand, within MPMX20_02661 at 2810.640 kb on + strand, within MPMX20_02661 at 2810.652 kb on + strand, within MPMX20_02661 at 2810.739 kb on - strand, within MPMX20_02661 at 2810.754 kb on - strand, within MPMX20_02661 at 2810.781 kb on + strand, within MPMX20_02661 at 2810.802 kb on + strand, within MPMX20_02661 at 2810.802 kb on + strand, within MPMX20_02661 at 2810.810 kb on - strand, within MPMX20_02661 at 2810.931 kb on + strand at 2811.098 kb on + strand at 2811.107 kb on + strand at 2811.120 kb on - strand at 2811.196 kb on - strand, within MPMX20_02662 at 2811.205 kb on - strand, within MPMX20_02662 at 2811.339 kb on + strand, within MPMX20_02662 at 2811.347 kb on - strand, within MPMX20_02662 at 2811.347 kb on - strand, within MPMX20_02662 at 2811.391 kb on + strand, within MPMX20_02662 at 2811.428 kb on - strand, within MPMX20_02662 at 2811.527 kb on + strand, within MPMX20_02662 at 2811.571 kb on - strand, within MPMX20_02662 at 2811.582 kb on + strand, within MPMX20_02662 at 2811.587 kb on + strand, within MPMX20_02662 at 2811.839 kb on - strand, within MPMX20_02662 at 2811.963 kb on + strand, within MPMX20_02662 at 2811.966 kb on - strand, within MPMX20_02662 at 2811.971 kb on - strand, within MPMX20_02662 at 2812.027 kb on + strand, within MPMX20_02662 at 2812.104 kb on - strand, within MPMX20_02662 at 2812.123 kb on - strand, within MPMX20_02662 at 2812.301 kb on + strand, within MPMX20_02662 at 2812.452 kb on - strand, within MPMX20_02662 at 2812.477 kb on + strand, within MPMX20_02662 at 2812.642 kb on - strand at 2812.668 kb on + strand at 2812.676 kb on - strand at 2812.705 kb on - strand at 2812.722 kb on + strand at 2812.722 kb on + strand at 2812.768 kb on + strand at 2812.877 kb on + strand, within MPMX20_02663 at 2812.879 kb on + strand, within MPMX20_02663 at 2812.935 kb on - strand, within MPMX20_02663 at 2812.958 kb on + strand, within MPMX20_02663 at 2813.021 kb on - strand, within MPMX20_02663 at 2813.021 kb on - strand, within MPMX20_02663 at 2813.099 kb on - strand, within MPMX20_02663 at 2813.109 kb on - strand, within MPMX20_02663 at 2813.124 kb on + strand, within MPMX20_02663 at 2813.125 kb on - strand, within MPMX20_02663 at 2813.127 kb on - strand, within MPMX20_02663 at 2813.158 kb on - strand, within MPMX20_02663 at 2813.355 kb on - strand at 2813.368 kb on - strand at 2813.372 kb on + strand at 2813.416 kb on + strand at 2813.450 kb on - strand, within MPMX20_02664 at 2813.720 kb on - strand, within MPMX20_02664 at 2813.777 kb on + strand, within MPMX20_02664 at 2813.803 kb on + strand, within MPMX20_02664
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,809,933 + +2.2 2,809,941 - +2.3 2,809,941 - +6.5 2,809,959 + +2.9 2,809,967 - +0.9 2,809,995 + +3.5 2,809,995 + +1.7 2,810,003 - MPMX20_02661 0.11 +2.9 2,810,003 - MPMX20_02661 0.11 +4.2 2,810,003 - MPMX20_02661 0.11 +4.7 2,810,060 + MPMX20_02661 0.16 +3.3 2,810,060 + MPMX20_02661 0.16 +4.5 2,810,068 - MPMX20_02661 0.17 +3.8 2,810,078 + MPMX20_02661 0.18 +0.1 2,810,329 + MPMX20_02661 0.42 +1.5 2,810,360 - MPMX20_02661 0.45 +2.3 2,810,428 - MPMX20_02661 0.51 +0.5 2,810,511 - MPMX20_02661 0.59 +4.6 2,810,531 + MPMX20_02661 0.61 +4.5 2,810,598 + MPMX20_02661 0.68 +3.3 2,810,606 - MPMX20_02661 0.68 +3.3 2,810,640 + MPMX20_02661 0.72 +3.9 2,810,652 + MPMX20_02661 0.73 +4.1 2,810,739 - MPMX20_02661 0.81 +5.2 2,810,754 - MPMX20_02661 0.82 +0.3 2,810,781 + MPMX20_02661 0.85 +3.7 2,810,802 + MPMX20_02661 0.87 +4.9 2,810,802 + MPMX20_02661 0.87 +1.1 2,810,810 - MPMX20_02661 0.88 +3.6 2,810,931 + +2.0 2,811,098 + +3.0 2,811,107 + +0.5 2,811,120 - +3.7 2,811,196 - MPMX20_02662 0.14 +5.6 2,811,205 - MPMX20_02662 0.15 +3.1 2,811,339 + MPMX20_02662 0.22 +3.9 2,811,347 - MPMX20_02662 0.22 +3.4 2,811,347 - MPMX20_02662 0.22 +4.3 2,811,391 + MPMX20_02662 0.24 +1.5 2,811,428 - MPMX20_02662 0.26 +4.1 2,811,527 + MPMX20_02662 0.32 +3.2 2,811,571 - MPMX20_02662 0.34 +4.2 2,811,582 + MPMX20_02662 0.35 +2.6 2,811,587 + MPMX20_02662 0.35 +1.5 2,811,839 - MPMX20_02662 0.48 +2.5 2,811,963 + MPMX20_02662 0.55 +1.5 2,811,966 - MPMX20_02662 0.55 +1.7 2,811,971 - MPMX20_02662 0.55 -0.1 2,812,027 + MPMX20_02662 0.58 +4.1 2,812,104 - MPMX20_02662 0.63 +3.3 2,812,123 - MPMX20_02662 0.64 +2.8 2,812,301 + MPMX20_02662 0.73 +4.9 2,812,452 - MPMX20_02662 0.81 +3.4 2,812,477 + MPMX20_02662 0.82 +3.2 2,812,642 - +4.8 2,812,668 + +5.2 2,812,676 - +3.3 2,812,705 - +2.2 2,812,722 + +4.5 2,812,722 + +1.1 2,812,768 + +1.7 2,812,877 + MPMX20_02663 0.12 +2.5 2,812,879 + MPMX20_02663 0.13 +2.3 2,812,935 - MPMX20_02663 0.23 +2.0 2,812,958 + MPMX20_02663 0.27 +3.1 2,813,021 - MPMX20_02663 0.38 +3.3 2,813,021 - MPMX20_02663 0.38 +3.3 2,813,099 - MPMX20_02663 0.52 +3.7 2,813,109 - MPMX20_02663 0.54 +4.2 2,813,124 + MPMX20_02663 0.56 +0.1 2,813,125 - MPMX20_02663 0.56 +5.0 2,813,127 - MPMX20_02663 0.57 +3.8 2,813,158 - MPMX20_02663 0.62 +4.2 2,813,355 - +4.7 2,813,368 - +2.4 2,813,372 + +0.9 2,813,416 + -0.1 2,813,450 - MPMX20_02664 0.11 +0.1 2,813,720 - MPMX20_02664 0.44 -0.1 2,813,777 + MPMX20_02664 0.51 +2.7 2,813,803 + MPMX20_02664 0.54 +0.1
Or see this region's nucleotide sequence