Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02534 and MPMX20_02535 are separated by 38 nucleotides MPMX20_02535 and MPMX20_02536 overlap by 11 nucleotides MPMX20_02536 and MPMX20_02537 are separated by 95 nucleotides
MPMX20_02534: MPMX20_02534 - hypothetical protein, at 2,673,511 to 2,673,645
_02534
MPMX20_02535: MPMX20_02535 - Pyrimidine-specific ribonucleoside hydrolase RihB, at 2,673,684 to 2,674,649
_02535
MPMX20_02536: MPMX20_02536 - Adenosine deaminase, at 2,674,639 to 2,675,622
_02536
MPMX20_02537: MPMX20_02537 - Multidrug resistance protein MdtL, at 2,675,718 to 2,676,833
_02537
Position (kb)
2674
2675
2676 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2673.781 kb on + strand, within MPMX20_02535 at 2673.805 kb on - strand, within MPMX20_02535 at 2674.315 kb on - strand, within MPMX20_02535 at 2674.401 kb on + strand, within MPMX20_02535 at 2674.412 kb on + strand, within MPMX20_02535 at 2674.844 kb on - strand, within MPMX20_02536 at 2674.859 kb on - strand, within MPMX20_02536 at 2675.335 kb on + strand, within MPMX20_02536 at 2675.998 kb on - strand, within MPMX20_02537 at 2675.998 kb on - strand, within MPMX20_02537 at 2676.009 kb on - strand, within MPMX20_02537 at 2676.041 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.055 kb on - strand, within MPMX20_02537 at 2676.060 kb on - strand, within MPMX20_02537 at 2676.065 kb on - strand, within MPMX20_02537 at 2676.080 kb on - strand, within MPMX20_02537 at 2676.082 kb on - strand, within MPMX20_02537 at 2676.082 kb on - strand, within MPMX20_02537 at 2676.082 kb on - strand, within MPMX20_02537 at 2676.082 kb on - strand, within MPMX20_02537 at 2676.090 kb on - strand, within MPMX20_02537 at 2676.090 kb on - strand, within MPMX20_02537 at 2676.090 kb on - strand, within MPMX20_02537 at 2676.090 kb on - strand, within MPMX20_02537 at 2676.090 kb on - strand, within MPMX20_02537 at 2676.090 kb on - strand, within MPMX20_02537 at 2676.097 kb on - strand, within MPMX20_02537 at 2676.097 kb on - strand, within MPMX20_02537 at 2676.104 kb on - strand, within MPMX20_02537 at 2676.110 kb on - strand, within MPMX20_02537 at 2676.115 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.117 kb on - strand, within MPMX20_02537 at 2676.120 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.122 kb on - strand, within MPMX20_02537 at 2676.132 kb on - strand, within MPMX20_02537 at 2676.132 kb on - strand, within MPMX20_02537 at 2676.132 kb on - strand, within MPMX20_02537 at 2676.132 kb on - strand, within MPMX20_02537 at 2676.137 kb on - strand, within MPMX20_02537 at 2676.147 kb on - strand, within MPMX20_02537 at 2676.159 kb on - strand, within MPMX20_02537 at 2676.182 kb on - strand, within MPMX20_02537 at 2676.182 kb on - strand, within MPMX20_02537 at 2676.185 kb on + strand, within MPMX20_02537 at 2676.187 kb on + strand, within MPMX20_02537 at 2676.187 kb on - strand, within MPMX20_02537 at 2676.187 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.193 kb on - strand, within MPMX20_02537 at 2676.200 kb on - strand, within MPMX20_02537 at 2676.206 kb on - strand, within MPMX20_02537 at 2676.213 kb on - strand, within MPMX20_02537 at 2676.222 kb on + strand, within MPMX20_02537 at 2676.225 kb on - strand, within MPMX20_02537 at 2676.225 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.237 kb on - strand, within MPMX20_02537 at 2676.239 kb on + strand, within MPMX20_02537 at 2676.242 kb on - strand, within MPMX20_02537 at 2676.242 kb on - strand, within MPMX20_02537 at 2676.242 kb on - strand, within MPMX20_02537 at 2676.242 kb on - strand, within MPMX20_02537 at 2676.242 kb on - strand, within MPMX20_02537 at 2676.242 kb on - strand, within MPMX20_02537 at 2676.242 kb on - strand, within MPMX20_02537 at 2676.244 kb on + strand, within MPMX20_02537 at 2676.244 kb on + strand, within MPMX20_02537 at 2676.244 kb on + strand, within MPMX20_02537 at 2676.244 kb on + strand, within MPMX20_02537 at 2676.246 kb on + strand, within MPMX20_02537 at 2676.246 kb on + strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.252 kb on - strand, within MPMX20_02537 at 2676.254 kb on - strand, within MPMX20_02537 at 2676.285 kb on - strand, within MPMX20_02537 at 2676.294 kb on + strand, within MPMX20_02537 at 2676.294 kb on + strand, within MPMX20_02537 at 2676.299 kb on + strand, within MPMX20_02537 at 2676.302 kb on - strand, within MPMX20_02537 at 2676.302 kb on - strand, within MPMX20_02537 at 2676.302 kb on - strand, within MPMX20_02537 at 2676.305 kb on + strand, within MPMX20_02537 at 2676.305 kb on + strand, within MPMX20_02537 at 2676.305 kb on + strand, within MPMX20_02537 at 2676.305 kb on + strand, within MPMX20_02537 at 2676.305 kb on + strand, within MPMX20_02537 at 2676.308 kb on - strand, within MPMX20_02537 at 2676.309 kb on - strand, within MPMX20_02537 at 2676.313 kb on - strand, within MPMX20_02537 at 2676.313 kb on - strand, within MPMX20_02537 at 2676.313 kb on - strand, within MPMX20_02537 at 2676.313 kb on - strand, within MPMX20_02537 at 2676.338 kb on + strand, within MPMX20_02537 at 2676.355 kb on + strand, within MPMX20_02537 at 2676.355 kb on + strand, within MPMX20_02537 at 2676.363 kb on - strand, within MPMX20_02537 at 2676.396 kb on - strand, within MPMX20_02537 at 2676.396 kb on - strand, within MPMX20_02537 at 2676.420 kb on + strand, within MPMX20_02537 at 2676.420 kb on + strand, within MPMX20_02537 at 2676.420 kb on + strand, within MPMX20_02537 at 2676.420 kb on + strand, within MPMX20_02537 at 2676.420 kb on + strand, within MPMX20_02537 at 2676.427 kb on - strand, within MPMX20_02537 at 2676.440 kb on + strand, within MPMX20_02537 at 2676.496 kb on + strand, within MPMX20_02537 at 2676.504 kb on - strand, within MPMX20_02537 at 2676.509 kb on + strand, within MPMX20_02537 at 2676.509 kb on + strand, within MPMX20_02537 at 2676.509 kb on + strand, within MPMX20_02537 at 2676.512 kb on - strand, within MPMX20_02537 at 2676.517 kb on - strand, within MPMX20_02537 at 2676.539 kb on - strand, within MPMX20_02537 at 2676.539 kb on - strand, within MPMX20_02537 at 2676.539 kb on - strand, within MPMX20_02537 at 2676.539 kb on - strand, within MPMX20_02537 at 2676.558 kb on - strand, within MPMX20_02537 at 2676.559 kb on + strand, within MPMX20_02537 at 2676.570 kb on + strand, within MPMX20_02537 at 2676.578 kb on + strand, within MPMX20_02537 at 2676.578 kb on - strand, within MPMX20_02537 at 2676.578 kb on - strand, within MPMX20_02537 at 2676.578 kb on - strand, within MPMX20_02537 at 2676.600 kb on - strand, within MPMX20_02537 at 2676.603 kb on + strand, within MPMX20_02537 at 2676.603 kb on + strand, within MPMX20_02537 at 2676.611 kb on - strand, within MPMX20_02537 at 2676.611 kb on - strand, within MPMX20_02537
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,673,781 + MPMX20_02535 0.10 -2.6 2,673,805 - MPMX20_02535 0.13 -0.1 2,674,315 - MPMX20_02535 0.65 -0.4 2,674,401 + MPMX20_02535 0.74 -1.0 2,674,412 + MPMX20_02535 0.75 +4.0 2,674,844 - MPMX20_02536 0.21 +0.9 2,674,859 - MPMX20_02536 0.22 +0.9 2,675,335 + MPMX20_02536 0.71 +0.4 2,675,998 - MPMX20_02537 0.25 +2.4 2,675,998 - MPMX20_02537 0.25 -1.0 2,676,009 - MPMX20_02537 0.26 -0.1 2,676,041 - MPMX20_02537 0.29 -1.4 2,676,055 - MPMX20_02537 0.30 -2.1 2,676,055 - MPMX20_02537 0.30 -0.6 2,676,055 - MPMX20_02537 0.30 -0.1 2,676,055 - MPMX20_02537 0.30 -0.7 2,676,055 - MPMX20_02537 0.30 -1.6 2,676,055 - MPMX20_02537 0.30 -2.9 2,676,055 - MPMX20_02537 0.30 +0.9 2,676,055 - MPMX20_02537 0.30 +1.4 2,676,055 - MPMX20_02537 0.30 +0.6 2,676,055 - MPMX20_02537 0.30 -2.3 2,676,055 - MPMX20_02537 0.30 -2.0 2,676,060 - MPMX20_02537 0.31 +0.9 2,676,065 - MPMX20_02537 0.31 +1.3 2,676,080 - MPMX20_02537 0.32 +2.8 2,676,082 - MPMX20_02537 0.33 -0.5 2,676,082 - MPMX20_02537 0.33 +0.1 2,676,082 - MPMX20_02537 0.33 +0.4 2,676,082 - MPMX20_02537 0.33 +0.3 2,676,090 - MPMX20_02537 0.33 -1.6 2,676,090 - MPMX20_02537 0.33 +0.1 2,676,090 - MPMX20_02537 0.33 +0.5 2,676,090 - MPMX20_02537 0.33 -0.6 2,676,090 - MPMX20_02537 0.33 -2.2 2,676,090 - MPMX20_02537 0.33 -1.4 2,676,097 - MPMX20_02537 0.34 -0.6 2,676,097 - MPMX20_02537 0.34 -2.2 2,676,104 - MPMX20_02537 0.35 -0.7 2,676,110 - MPMX20_02537 0.35 -1.0 2,676,115 - MPMX20_02537 0.36 -1.5 2,676,117 - MPMX20_02537 0.36 -0.1 2,676,117 - MPMX20_02537 0.36 +1.9 2,676,117 - MPMX20_02537 0.36 -0.5 2,676,117 - MPMX20_02537 0.36 -0.9 2,676,117 - MPMX20_02537 0.36 +0.1 2,676,117 - MPMX20_02537 0.36 +1.3 2,676,117 - MPMX20_02537 0.36 -0.6 2,676,117 - MPMX20_02537 0.36 -0.1 2,676,117 - MPMX20_02537 0.36 +0.5 2,676,120 - MPMX20_02537 0.36 -1.0 2,676,122 - MPMX20_02537 0.36 -1.1 2,676,122 - MPMX20_02537 0.36 +2.4 2,676,122 - MPMX20_02537 0.36 +2.3 2,676,122 - MPMX20_02537 0.36 -2.3 2,676,122 - MPMX20_02537 0.36 -0.0 2,676,122 - MPMX20_02537 0.36 +1.0 2,676,122 - MPMX20_02537 0.36 -0.9 2,676,122 - MPMX20_02537 0.36 -1.0 2,676,122 - MPMX20_02537 0.36 -1.0 2,676,132 - MPMX20_02537 0.37 -1.3 2,676,132 - MPMX20_02537 0.37 +0.5 2,676,132 - MPMX20_02537 0.37 -2.3 2,676,132 - MPMX20_02537 0.37 -0.8 2,676,137 - MPMX20_02537 0.38 -2.2 2,676,147 - MPMX20_02537 0.38 +1.2 2,676,159 - MPMX20_02537 0.40 +1.2 2,676,182 - MPMX20_02537 0.42 -0.0 2,676,182 - MPMX20_02537 0.42 -1.6 2,676,185 + MPMX20_02537 0.42 -0.7 2,676,187 + MPMX20_02537 0.42 -0.7 2,676,187 - MPMX20_02537 0.42 -1.1 2,676,187 - MPMX20_02537 0.42 -0.7 2,676,193 - MPMX20_02537 0.43 -1.3 2,676,193 - MPMX20_02537 0.43 -0.1 2,676,193 - MPMX20_02537 0.43 -1.6 2,676,193 - MPMX20_02537 0.43 -1.5 2,676,193 - MPMX20_02537 0.43 +1.4 2,676,193 - MPMX20_02537 0.43 -0.6 2,676,193 - MPMX20_02537 0.43 +1.4 2,676,193 - MPMX20_02537 0.43 +0.1 2,676,193 - MPMX20_02537 0.43 +2.4 2,676,193 - MPMX20_02537 0.43 +0.7 2,676,193 - MPMX20_02537 0.43 -0.1 2,676,193 - MPMX20_02537 0.43 -1.5 2,676,200 - MPMX20_02537 0.43 -0.0 2,676,206 - MPMX20_02537 0.44 +0.7 2,676,213 - MPMX20_02537 0.44 +0.1 2,676,222 + MPMX20_02537 0.45 +0.4 2,676,225 - MPMX20_02537 0.45 +0.4 2,676,225 - MPMX20_02537 0.45 +0.1 2,676,237 - MPMX20_02537 0.47 +0.9 2,676,237 - MPMX20_02537 0.47 +0.1 2,676,237 - MPMX20_02537 0.47 +0.5 2,676,237 - MPMX20_02537 0.47 +1.1 2,676,237 - MPMX20_02537 0.47 -0.1 2,676,237 - MPMX20_02537 0.47 +1.4 2,676,237 - MPMX20_02537 0.47 -2.8 2,676,237 - MPMX20_02537 0.47 +0.4 2,676,237 - MPMX20_02537 0.47 -2.5 2,676,239 + MPMX20_02537 0.47 -0.7 2,676,242 - MPMX20_02537 0.47 +0.1 2,676,242 - MPMX20_02537 0.47 -1.0 2,676,242 - MPMX20_02537 0.47 +2.9 2,676,242 - MPMX20_02537 0.47 -2.7 2,676,242 - MPMX20_02537 0.47 -0.7 2,676,242 - MPMX20_02537 0.47 +1.6 2,676,242 - MPMX20_02537 0.47 -0.9 2,676,244 + MPMX20_02537 0.47 -1.2 2,676,244 + MPMX20_02537 0.47 +0.7 2,676,244 + MPMX20_02537 0.47 -0.1 2,676,244 + MPMX20_02537 0.47 +0.1 2,676,246 + MPMX20_02537 0.47 +1.4 2,676,246 + MPMX20_02537 0.47 +0.9 2,676,252 - MPMX20_02537 0.48 -2.3 2,676,252 - MPMX20_02537 0.48 +0.6 2,676,252 - MPMX20_02537 0.48 +1.4 2,676,252 - MPMX20_02537 0.48 -3.1 2,676,252 - MPMX20_02537 0.48 +0.9 2,676,252 - MPMX20_02537 0.48 -1.6 2,676,252 - MPMX20_02537 0.48 -0.6 2,676,252 - MPMX20_02537 0.48 +1.5 2,676,252 - MPMX20_02537 0.48 -0.7 2,676,252 - MPMX20_02537 0.48 +1.5 2,676,252 - MPMX20_02537 0.48 -0.5 2,676,252 - MPMX20_02537 0.48 +1.4 2,676,252 - MPMX20_02537 0.48 +0.4 2,676,252 - MPMX20_02537 0.48 +0.4 2,676,252 - MPMX20_02537 0.48 +0.1 2,676,252 - MPMX20_02537 0.48 -0.9 2,676,252 - MPMX20_02537 0.48 +0.2 2,676,252 - MPMX20_02537 0.48 -0.9 2,676,254 - MPMX20_02537 0.48 -0.2 2,676,285 - MPMX20_02537 0.51 +3.6 2,676,294 + MPMX20_02537 0.52 +0.9 2,676,294 + MPMX20_02537 0.52 -2.0 2,676,299 + MPMX20_02537 0.52 -1.6 2,676,302 - MPMX20_02537 0.52 -1.6 2,676,302 - MPMX20_02537 0.52 -1.4 2,676,302 - MPMX20_02537 0.52 -2.7 2,676,305 + MPMX20_02537 0.53 +1.9 2,676,305 + MPMX20_02537 0.53 +3.8 2,676,305 + MPMX20_02537 0.53 +1.0 2,676,305 + MPMX20_02537 0.53 +1.4 2,676,305 + MPMX20_02537 0.53 -1.6 2,676,308 - MPMX20_02537 0.53 +2.4 2,676,309 - MPMX20_02537 0.53 -2.1 2,676,313 - MPMX20_02537 0.53 +1.4 2,676,313 - MPMX20_02537 0.53 -0.4 2,676,313 - MPMX20_02537 0.53 +0.4 2,676,313 - MPMX20_02537 0.53 -1.7 2,676,338 + MPMX20_02537 0.56 +4.6 2,676,355 + MPMX20_02537 0.57 -1.0 2,676,355 + MPMX20_02537 0.57 +0.9 2,676,363 - MPMX20_02537 0.58 +0.6 2,676,396 - MPMX20_02537 0.61 +0.1 2,676,396 - MPMX20_02537 0.61 -0.9 2,676,420 + MPMX20_02537 0.63 -2.5 2,676,420 + MPMX20_02537 0.63 -2.6 2,676,420 + MPMX20_02537 0.63 +1.1 2,676,420 + MPMX20_02537 0.63 -1.6 2,676,420 + MPMX20_02537 0.63 +1.1 2,676,427 - MPMX20_02537 0.64 +0.2 2,676,440 + MPMX20_02537 0.65 +0.6 2,676,496 + MPMX20_02537 0.70 +0.4 2,676,504 - MPMX20_02537 0.70 +2.9 2,676,509 + MPMX20_02537 0.71 +0.2 2,676,509 + MPMX20_02537 0.71 +0.4 2,676,509 + MPMX20_02537 0.71 -1.6 2,676,512 - MPMX20_02537 0.71 +0.0 2,676,517 - MPMX20_02537 0.72 -1.3 2,676,539 - MPMX20_02537 0.74 -1.8 2,676,539 - MPMX20_02537 0.74 +0.3 2,676,539 - MPMX20_02537 0.74 -2.9 2,676,539 - MPMX20_02537 0.74 +1.9 2,676,558 - MPMX20_02537 0.75 -0.9 2,676,559 + MPMX20_02537 0.75 -0.7 2,676,570 + MPMX20_02537 0.76 +0.9 2,676,578 + MPMX20_02537 0.77 -0.2 2,676,578 - MPMX20_02537 0.77 +0.7 2,676,578 - MPMX20_02537 0.77 +0.4 2,676,578 - MPMX20_02537 0.77 -1.4 2,676,600 - MPMX20_02537 0.79 -2.1 2,676,603 + MPMX20_02537 0.79 -0.1 2,676,603 + MPMX20_02537 0.79 +0.1 2,676,611 - MPMX20_02537 0.80 +1.4 2,676,611 - MPMX20_02537 0.80 -4.0
Or see this region's nucleotide sequence