Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02461

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02459 and MPMX20_02460 overlap by 49 nucleotidesMPMX20_02460 and MPMX20_02461 overlap by 11 nucleotidesMPMX20_02461 and MPMX20_02462 overlap by 7 nucleotides MPMX20_02459: MPMX20_02459 - Oligosaccharides import ATP-binding protein MsmX, at 2,599,301 to 2,600,434 _02459 MPMX20_02460: MPMX20_02460 - Beta-phosphoglucomutase, at 2,600,386 to 2,601,063 _02460 MPMX20_02461: MPMX20_02461 - Kojibiose phosphorylase, at 2,601,053 to 2,603,332 _02461 MPMX20_02462: MPMX20_02462 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 2,603,326 to 2,604,381 _02462 Position (kb) 2601 2602 2603 2604Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2600.099 kb on + strand, within MPMX20_02459at 2600.107 kb on - strand, within MPMX20_02459at 2600.107 kb on - strand, within MPMX20_02459at 2600.167 kb on - strand, within MPMX20_02459at 2600.264 kb on + strand, within MPMX20_02459at 2600.333 kb on + strandat 2600.333 kb on + strandat 2600.336 kb on - strandat 2600.341 kb on - strandat 2600.341 kb on - strandat 2600.343 kb on - strandat 2600.397 kb on + strandat 2600.424 kb on + strandat 2600.451 kb on + strandat 2600.472 kb on - strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.479 kb on + strand, within MPMX20_02460at 2600.484 kb on + strand, within MPMX20_02460at 2600.484 kb on + strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.487 kb on - strand, within MPMX20_02460at 2600.490 kb on + strand, within MPMX20_02460at 2600.490 kb on + strand, within MPMX20_02460at 2600.492 kb on - strand, within MPMX20_02460at 2600.492 kb on - strand, within MPMX20_02460at 2600.537 kb on - strand, within MPMX20_02460at 2600.589 kb on - strand, within MPMX20_02460at 2600.630 kb on - strand, within MPMX20_02460at 2600.710 kb on - strand, within MPMX20_02460at 2600.714 kb on + strand, within MPMX20_02460at 2600.722 kb on - strand, within MPMX20_02460at 2600.794 kb on + strand, within MPMX20_02460at 2600.830 kb on + strand, within MPMX20_02460at 2600.928 kb on - strand, within MPMX20_02460at 2600.928 kb on - strand, within MPMX20_02460at 2601.014 kb on + strandat 2601.022 kb on + strandat 2601.050 kb on + strandat 2601.135 kb on + strandat 2601.135 kb on + strandat 2601.135 kb on + strandat 2601.143 kb on - strandat 2601.147 kb on + strandat 2601.155 kb on - strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.160 kb on + strandat 2601.167 kb on + strandat 2601.168 kb on - strandat 2601.168 kb on - strandat 2601.168 kb on - strandat 2601.168 kb on - strandat 2601.168 kb on - strandat 2601.170 kb on - strandat 2601.175 kb on + strandat 2601.175 kb on + strandat 2601.218 kb on + strandat 2601.346 kb on + strand, within MPMX20_02461at 2601.354 kb on - strand, within MPMX20_02461at 2601.389 kb on - strand, within MPMX20_02461at 2601.503 kb on + strand, within MPMX20_02461at 2601.503 kb on + strand, within MPMX20_02461at 2601.504 kb on - strand, within MPMX20_02461at 2601.511 kb on - strand, within MPMX20_02461at 2601.555 kb on + strand, within MPMX20_02461at 2601.555 kb on + strand, within MPMX20_02461at 2601.556 kb on + strand, within MPMX20_02461at 2601.558 kb on - strand, within MPMX20_02461at 2601.604 kb on + strand, within MPMX20_02461at 2601.684 kb on - strand, within MPMX20_02461at 2601.749 kb on + strand, within MPMX20_02461at 2601.749 kb on + strand, within MPMX20_02461at 2601.757 kb on - strand, within MPMX20_02461at 2601.757 kb on - strand, within MPMX20_02461at 2601.793 kb on + strand, within MPMX20_02461at 2601.821 kb on - strand, within MPMX20_02461at 2601.898 kb on + strand, within MPMX20_02461at 2601.907 kb on + strand, within MPMX20_02461at 2601.907 kb on + strand, within MPMX20_02461at 2601.915 kb on - strand, within MPMX20_02461at 2601.995 kb on + strand, within MPMX20_02461at 2602.003 kb on - strand, within MPMX20_02461at 2602.040 kb on + strand, within MPMX20_02461at 2602.046 kb on + strand, within MPMX20_02461at 2602.046 kb on - strand, within MPMX20_02461at 2602.156 kb on + strand, within MPMX20_02461at 2602.275 kb on + strand, within MPMX20_02461at 2602.355 kb on + strand, within MPMX20_02461at 2602.363 kb on - strand, within MPMX20_02461at 2602.414 kb on + strand, within MPMX20_02461at 2602.425 kb on + strand, within MPMX20_02461at 2602.425 kb on + strand, within MPMX20_02461at 2602.425 kb on + strand, within MPMX20_02461at 2602.425 kb on + strand, within MPMX20_02461at 2602.433 kb on - strand, within MPMX20_02461at 2602.433 kb on - strand, within MPMX20_02461at 2602.471 kb on - strand, within MPMX20_02461at 2602.482 kb on - strand, within MPMX20_02461at 2602.500 kb on - strand, within MPMX20_02461at 2602.543 kb on - strand, within MPMX20_02461at 2602.552 kb on + strand, within MPMX20_02461at 2602.552 kb on + strand, within MPMX20_02461at 2602.560 kb on - strand, within MPMX20_02461at 2602.560 kb on - strand, within MPMX20_02461at 2602.647 kb on + strand, within MPMX20_02461at 2602.712 kb on + strand, within MPMX20_02461at 2602.792 kb on + strand, within MPMX20_02461at 2602.802 kb on - strand, within MPMX20_02461at 2602.926 kb on + strand, within MPMX20_02461at 2603.021 kb on + strand, within MPMX20_02461at 2603.135 kb on + strandat 2603.156 kb on - strandat 2603.170 kb on + strandat 2603.201 kb on - strandat 2603.208 kb on + strandat 2603.208 kb on + strandat 2603.208 kb on + strandat 2603.216 kb on - strandat 2603.216 kb on - strandat 2603.216 kb on - strandat 2603.216 kb on - strandat 2603.216 kb on - strandat 2603.216 kb on - strandat 2603.296 kb on - strandat 2603.296 kb on - strandat 2603.329 kb on + strandat 2603.403 kb on + strandat 2603.436 kb on + strand, within MPMX20_02462at 2603.462 kb on + strand, within MPMX20_02462at 2603.499 kb on + strand, within MPMX20_02462at 2603.499 kb on + strand, within MPMX20_02462at 2603.499 kb on + strand, within MPMX20_02462at 2603.499 kb on + strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.507 kb on - strand, within MPMX20_02462at 2603.551 kb on - strand, within MPMX20_02462at 2603.566 kb on - strand, within MPMX20_02462at 2603.566 kb on - strand, within MPMX20_02462at 2603.601 kb on + strand, within MPMX20_02462at 2603.609 kb on - strand, within MPMX20_02462at 2603.643 kb on - strand, within MPMX20_02462at 2603.674 kb on - strand, within MPMX20_02462at 2603.755 kb on + strand, within MPMX20_02462at 2603.849 kb on + strand, within MPMX20_02462at 2603.876 kb on + strand, within MPMX20_02462at 2603.884 kb on - strand, within MPMX20_02462at 2603.975 kb on - strand, within MPMX20_02462at 2603.982 kb on - strand, within MPMX20_02462at 2604.012 kb on - strand, within MPMX20_02462at 2604.070 kb on + strand, within MPMX20_02462at 2604.162 kb on + strand, within MPMX20_02462at 2604.244 kb on - strand, within MPMX20_02462at 2604.246 kb on + strand, within MPMX20_02462at 2604.246 kb on + strand, within MPMX20_02462at 2604.254 kb on - strand, within MPMX20_02462at 2604.259 kb on + strand, within MPMX20_02462at 2604.267 kb on - strand, within MPMX20_02462at 2604.267 kb on - strand, within MPMX20_02462

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,600,099 + MPMX20_02459 0.70 +0.5
2,600,107 - MPMX20_02459 0.71 +0.1
2,600,107 - MPMX20_02459 0.71 +1.1
2,600,167 - MPMX20_02459 0.76 +1.2
2,600,264 + MPMX20_02459 0.85 -1.9
2,600,333 + +2.4
2,600,333 + +1.9
2,600,336 - -1.4
2,600,341 - +1.1
2,600,341 - -2.4
2,600,343 - -0.1
2,600,397 + +1.4
2,600,424 + -2.1
2,600,451 + -1.5
2,600,472 - MPMX20_02460 0.13 -0.6
2,600,479 + MPMX20_02460 0.14 -1.5
2,600,479 + MPMX20_02460 0.14 -1.7
2,600,479 + MPMX20_02460 0.14 -1.9
2,600,479 + MPMX20_02460 0.14 -0.4
2,600,479 + MPMX20_02460 0.14 +0.9
2,600,479 + MPMX20_02460 0.14 -0.3
2,600,479 + MPMX20_02460 0.14 +0.9
2,600,479 + MPMX20_02460 0.14 -0.5
2,600,484 + MPMX20_02460 0.14 +0.2
2,600,484 + MPMX20_02460 0.14 +2.1
2,600,487 - MPMX20_02460 0.15 +0.4
2,600,487 - MPMX20_02460 0.15 +0.7
2,600,487 - MPMX20_02460 0.15 -0.8
2,600,487 - MPMX20_02460 0.15 -0.9
2,600,487 - MPMX20_02460 0.15 -1.3
2,600,487 - MPMX20_02460 0.15 +1.4
2,600,487 - MPMX20_02460 0.15 -2.9
2,600,487 - MPMX20_02460 0.15 -1.1
2,600,487 - MPMX20_02460 0.15 +0.9
2,600,487 - MPMX20_02460 0.15 -1.2
2,600,487 - MPMX20_02460 0.15 +0.1
2,600,487 - MPMX20_02460 0.15 +0.6
2,600,487 - MPMX20_02460 0.15 +1.2
2,600,487 - MPMX20_02460 0.15 -1.7
2,600,487 - MPMX20_02460 0.15 -0.6
2,600,487 - MPMX20_02460 0.15 -0.9
2,600,487 - MPMX20_02460 0.15 +1.0
2,600,490 + MPMX20_02460 0.15 -2.0
2,600,490 + MPMX20_02460 0.15 -2.3
2,600,492 - MPMX20_02460 0.16 +2.7
2,600,492 - MPMX20_02460 0.16 +0.4
2,600,537 - MPMX20_02460 0.22 +1.7
2,600,589 - MPMX20_02460 0.30 +1.4
2,600,630 - MPMX20_02460 0.36 +0.9
2,600,710 - MPMX20_02460 0.48 -1.8
2,600,714 + MPMX20_02460 0.48 -1.8
2,600,722 - MPMX20_02460 0.50 -0.9
2,600,794 + MPMX20_02460 0.60 +1.2
2,600,830 + MPMX20_02460 0.65 -0.1
2,600,928 - MPMX20_02460 0.80 -0.4
2,600,928 - MPMX20_02460 0.80 -2.6
2,601,014 + -1.1
2,601,022 + +1.3
2,601,050 + +0.3
2,601,135 + +0.4
2,601,135 + +2.3
2,601,135 + +1.1
2,601,143 - +0.3
2,601,147 + -0.9
2,601,155 - -1.0
2,601,160 + -3.5
2,601,160 + -0.3
2,601,160 + +1.7
2,601,160 + -0.4
2,601,160 + +0.9
2,601,160 + +0.9
2,601,160 + -2.1
2,601,160 + -0.3
2,601,160 + -0.3
2,601,160 + +3.0
2,601,160 + -0.9
2,601,167 + -1.1
2,601,168 - -0.4
2,601,168 - -0.6
2,601,168 - -1.1
2,601,168 - +0.9
2,601,168 - +0.1
2,601,170 - -0.3
2,601,175 + +1.9
2,601,175 + +0.3
2,601,218 + -0.5
2,601,346 + MPMX20_02461 0.13 -2.9
2,601,354 - MPMX20_02461 0.13 -3.8
2,601,389 - MPMX20_02461 0.15 -0.7
2,601,503 + MPMX20_02461 0.20 +2.2
2,601,503 + MPMX20_02461 0.20 -0.5
2,601,504 - MPMX20_02461 0.20 +0.4
2,601,511 - MPMX20_02461 0.20 -1.3
2,601,555 + MPMX20_02461 0.22 -1.5
2,601,555 + MPMX20_02461 0.22 +0.1
2,601,556 + MPMX20_02461 0.22 -0.0
2,601,558 - MPMX20_02461 0.22 +1.4
2,601,604 + MPMX20_02461 0.24 +1.5
2,601,684 - MPMX20_02461 0.28 +0.1
2,601,749 + MPMX20_02461 0.31 +2.4
2,601,749 + MPMX20_02461 0.31 -1.5
2,601,757 - MPMX20_02461 0.31 +1.6
2,601,757 - MPMX20_02461 0.31 -1.4
2,601,793 + MPMX20_02461 0.32 +1.1
2,601,821 - MPMX20_02461 0.34 +0.9
2,601,898 + MPMX20_02461 0.37 +1.4
2,601,907 + MPMX20_02461 0.37 -0.0
2,601,907 + MPMX20_02461 0.37 -3.4
2,601,915 - MPMX20_02461 0.38 -2.1
2,601,995 + MPMX20_02461 0.41 -3.9
2,602,003 - MPMX20_02461 0.42 -2.9
2,602,040 + MPMX20_02461 0.43 -0.3
2,602,046 + MPMX20_02461 0.44 +0.4
2,602,046 - MPMX20_02461 0.44 +0.9
2,602,156 + MPMX20_02461 0.48 +2.4
2,602,275 + MPMX20_02461 0.54 +1.1
2,602,355 + MPMX20_02461 0.57 +1.9
2,602,363 - MPMX20_02461 0.57 +0.7
2,602,414 + MPMX20_02461 0.60 +0.2
2,602,425 + MPMX20_02461 0.60 -0.6
2,602,425 + MPMX20_02461 0.60 +0.3
2,602,425 + MPMX20_02461 0.60 -0.4
2,602,425 + MPMX20_02461 0.60 -1.9
2,602,433 - MPMX20_02461 0.61 +0.2
2,602,433 - MPMX20_02461 0.61 +0.0
2,602,471 - MPMX20_02461 0.62 -1.5
2,602,482 - MPMX20_02461 0.63 -0.6
2,602,500 - MPMX20_02461 0.63 +0.7
2,602,543 - MPMX20_02461 0.65 +0.4
2,602,552 + MPMX20_02461 0.66 +0.4
2,602,552 + MPMX20_02461 0.66 -1.4
2,602,560 - MPMX20_02461 0.66 -0.6
2,602,560 - MPMX20_02461 0.66 -1.1
2,602,647 + MPMX20_02461 0.70 -3.0
2,602,712 + MPMX20_02461 0.73 -0.7
2,602,792 + MPMX20_02461 0.76 -2.4
2,602,802 - MPMX20_02461 0.77 +1.7
2,602,926 + MPMX20_02461 0.82 -0.7
2,603,021 + MPMX20_02461 0.86 -0.6
2,603,135 + -2.7
2,603,156 - -0.6
2,603,170 + +0.9
2,603,201 - -0.7
2,603,208 + +1.9
2,603,208 + -0.3
2,603,208 + -1.0
2,603,216 - -1.1
2,603,216 - -0.7
2,603,216 - -0.1
2,603,216 - -2.5
2,603,216 - -0.8
2,603,216 - +0.8
2,603,296 - -0.9
2,603,296 - +0.3
2,603,329 + -0.8
2,603,403 + +4.3
2,603,436 + MPMX20_02462 0.10 +1.3
2,603,462 + MPMX20_02462 0.13 -1.6
2,603,499 + MPMX20_02462 0.16 +0.9
2,603,499 + MPMX20_02462 0.16 +1.0
2,603,499 + MPMX20_02462 0.16 -1.4
2,603,499 + MPMX20_02462 0.16 -1.7
2,603,507 - MPMX20_02462 0.17 -2.9
2,603,507 - MPMX20_02462 0.17 +0.6
2,603,507 - MPMX20_02462 0.17 +0.8
2,603,507 - MPMX20_02462 0.17 +0.3
2,603,507 - MPMX20_02462 0.17 +3.4
2,603,507 - MPMX20_02462 0.17 -0.2
2,603,507 - MPMX20_02462 0.17 +0.3
2,603,507 - MPMX20_02462 0.17 -1.4
2,603,551 - MPMX20_02462 0.21 -0.1
2,603,566 - MPMX20_02462 0.23 -0.7
2,603,566 - MPMX20_02462 0.23 -1.7
2,603,601 + MPMX20_02462 0.26 -2.0
2,603,609 - MPMX20_02462 0.27 -1.1
2,603,643 - MPMX20_02462 0.30 -2.1
2,603,674 - MPMX20_02462 0.33 +0.4
2,603,755 + MPMX20_02462 0.41 -0.7
2,603,849 + MPMX20_02462 0.50 +0.5
2,603,876 + MPMX20_02462 0.52 -2.8
2,603,884 - MPMX20_02462 0.53 -0.1
2,603,975 - MPMX20_02462 0.61 -0.9
2,603,982 - MPMX20_02462 0.62 -0.1
2,604,012 - MPMX20_02462 0.65 +0.8
2,604,070 + MPMX20_02462 0.70 -1.9
2,604,162 + MPMX20_02462 0.79 +0.4
2,604,244 - MPMX20_02462 0.87 +1.4
2,604,246 + MPMX20_02462 0.87 -0.9
2,604,246 + MPMX20_02462 0.87 +0.4
2,604,254 - MPMX20_02462 0.88 -1.3
2,604,259 + MPMX20_02462 0.88 -1.7
2,604,267 - MPMX20_02462 0.89 -1.9
2,604,267 - MPMX20_02462 0.89 +0.1

Or see this region's nucleotide sequence