Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02459 and MPMX20_02460 overlap by 49 nucleotides MPMX20_02460 and MPMX20_02461 overlap by 11 nucleotides MPMX20_02461 and MPMX20_02462 overlap by 7 nucleotides
MPMX20_02459: MPMX20_02459 - Oligosaccharides import ATP-binding protein MsmX, at 2,599,301 to 2,600,434
_02459
MPMX20_02460: MPMX20_02460 - Beta-phosphoglucomutase, at 2,600,386 to 2,601,063
_02460
MPMX20_02461: MPMX20_02461 - Kojibiose phosphorylase, at 2,601,053 to 2,603,332
_02461
MPMX20_02462: MPMX20_02462 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 2,603,326 to 2,604,381
_02462
Position (kb)
2601
2602
2603
2604 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2600.099 kb on + strand, within MPMX20_02459 at 2600.107 kb on - strand, within MPMX20_02459 at 2600.107 kb on - strand, within MPMX20_02459 at 2600.167 kb on - strand, within MPMX20_02459 at 2600.264 kb on + strand, within MPMX20_02459 at 2600.333 kb on + strand at 2600.333 kb on + strand at 2600.336 kb on - strand at 2600.341 kb on - strand at 2600.341 kb on - strand at 2600.343 kb on - strand at 2600.397 kb on + strand at 2600.424 kb on + strand at 2600.451 kb on + strand at 2600.472 kb on - strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.479 kb on + strand, within MPMX20_02460 at 2600.484 kb on + strand, within MPMX20_02460 at 2600.484 kb on + strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.487 kb on - strand, within MPMX20_02460 at 2600.490 kb on + strand, within MPMX20_02460 at 2600.490 kb on + strand, within MPMX20_02460 at 2600.492 kb on - strand, within MPMX20_02460 at 2600.492 kb on - strand, within MPMX20_02460 at 2600.537 kb on - strand, within MPMX20_02460 at 2600.589 kb on - strand, within MPMX20_02460 at 2600.630 kb on - strand, within MPMX20_02460 at 2600.710 kb on - strand, within MPMX20_02460 at 2600.714 kb on + strand, within MPMX20_02460 at 2600.722 kb on - strand, within MPMX20_02460 at 2600.794 kb on + strand, within MPMX20_02460 at 2600.830 kb on + strand, within MPMX20_02460 at 2600.928 kb on - strand, within MPMX20_02460 at 2600.928 kb on - strand, within MPMX20_02460 at 2601.014 kb on + strand at 2601.022 kb on + strand at 2601.050 kb on + strand at 2601.135 kb on + strand at 2601.135 kb on + strand at 2601.135 kb on + strand at 2601.143 kb on - strand at 2601.147 kb on + strand at 2601.155 kb on - strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.160 kb on + strand at 2601.167 kb on + strand at 2601.168 kb on - strand at 2601.168 kb on - strand at 2601.168 kb on - strand at 2601.168 kb on - strand at 2601.168 kb on - strand at 2601.170 kb on - strand at 2601.175 kb on + strand at 2601.175 kb on + strand at 2601.218 kb on + strand at 2601.346 kb on + strand, within MPMX20_02461 at 2601.354 kb on - strand, within MPMX20_02461 at 2601.389 kb on - strand, within MPMX20_02461 at 2601.503 kb on + strand, within MPMX20_02461 at 2601.503 kb on + strand, within MPMX20_02461 at 2601.504 kb on - strand, within MPMX20_02461 at 2601.511 kb on - strand, within MPMX20_02461 at 2601.555 kb on + strand, within MPMX20_02461 at 2601.555 kb on + strand, within MPMX20_02461 at 2601.556 kb on + strand, within MPMX20_02461 at 2601.558 kb on - strand, within MPMX20_02461 at 2601.604 kb on + strand, within MPMX20_02461 at 2601.684 kb on - strand, within MPMX20_02461 at 2601.749 kb on + strand, within MPMX20_02461 at 2601.749 kb on + strand, within MPMX20_02461 at 2601.757 kb on - strand, within MPMX20_02461 at 2601.757 kb on - strand, within MPMX20_02461 at 2601.793 kb on + strand, within MPMX20_02461 at 2601.821 kb on - strand, within MPMX20_02461 at 2601.898 kb on + strand, within MPMX20_02461 at 2601.907 kb on + strand, within MPMX20_02461 at 2601.907 kb on + strand, within MPMX20_02461 at 2601.915 kb on - strand, within MPMX20_02461 at 2601.995 kb on + strand, within MPMX20_02461 at 2602.003 kb on - strand, within MPMX20_02461 at 2602.040 kb on + strand, within MPMX20_02461 at 2602.046 kb on + strand, within MPMX20_02461 at 2602.046 kb on - strand, within MPMX20_02461 at 2602.156 kb on + strand, within MPMX20_02461 at 2602.275 kb on + strand, within MPMX20_02461 at 2602.355 kb on + strand, within MPMX20_02461 at 2602.363 kb on - strand, within MPMX20_02461 at 2602.414 kb on + strand, within MPMX20_02461 at 2602.425 kb on + strand, within MPMX20_02461 at 2602.425 kb on + strand, within MPMX20_02461 at 2602.425 kb on + strand, within MPMX20_02461 at 2602.425 kb on + strand, within MPMX20_02461 at 2602.433 kb on - strand, within MPMX20_02461 at 2602.433 kb on - strand, within MPMX20_02461 at 2602.471 kb on - strand, within MPMX20_02461 at 2602.482 kb on - strand, within MPMX20_02461 at 2602.500 kb on - strand, within MPMX20_02461 at 2602.543 kb on - strand, within MPMX20_02461 at 2602.552 kb on + strand, within MPMX20_02461 at 2602.552 kb on + strand, within MPMX20_02461 at 2602.560 kb on - strand, within MPMX20_02461 at 2602.560 kb on - strand, within MPMX20_02461 at 2602.647 kb on + strand, within MPMX20_02461 at 2602.712 kb on + strand, within MPMX20_02461 at 2602.792 kb on + strand, within MPMX20_02461 at 2602.802 kb on - strand, within MPMX20_02461 at 2602.926 kb on + strand, within MPMX20_02461 at 2603.021 kb on + strand, within MPMX20_02461 at 2603.135 kb on + strand at 2603.156 kb on - strand at 2603.170 kb on + strand at 2603.201 kb on - strand at 2603.208 kb on + strand at 2603.208 kb on + strand at 2603.208 kb on + strand at 2603.216 kb on - strand at 2603.216 kb on - strand at 2603.216 kb on - strand at 2603.216 kb on - strand at 2603.216 kb on - strand at 2603.216 kb on - strand at 2603.296 kb on - strand at 2603.296 kb on - strand at 2603.329 kb on + strand at 2603.403 kb on + strand at 2603.436 kb on + strand, within MPMX20_02462 at 2603.462 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.551 kb on - strand, within MPMX20_02462 at 2603.566 kb on - strand, within MPMX20_02462 at 2603.566 kb on - strand, within MPMX20_02462 at 2603.601 kb on + strand, within MPMX20_02462 at 2603.609 kb on - strand, within MPMX20_02462 at 2603.643 kb on - strand, within MPMX20_02462 at 2603.674 kb on - strand, within MPMX20_02462 at 2603.755 kb on + strand, within MPMX20_02462 at 2603.849 kb on + strand, within MPMX20_02462 at 2603.876 kb on + strand, within MPMX20_02462 at 2603.884 kb on - strand, within MPMX20_02462 at 2603.975 kb on - strand, within MPMX20_02462 at 2603.982 kb on - strand, within MPMX20_02462 at 2604.012 kb on - strand, within MPMX20_02462 at 2604.070 kb on + strand, within MPMX20_02462 at 2604.162 kb on + strand, within MPMX20_02462 at 2604.244 kb on - strand, within MPMX20_02462 at 2604.246 kb on + strand, within MPMX20_02462 at 2604.246 kb on + strand, within MPMX20_02462 at 2604.254 kb on - strand, within MPMX20_02462 at 2604.259 kb on + strand, within MPMX20_02462 at 2604.267 kb on - strand, within MPMX20_02462 at 2604.267 kb on - strand, within MPMX20_02462
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,600,099 + MPMX20_02459 0.70 +0.5 2,600,107 - MPMX20_02459 0.71 +0.1 2,600,107 - MPMX20_02459 0.71 +1.1 2,600,167 - MPMX20_02459 0.76 +1.2 2,600,264 + MPMX20_02459 0.85 -1.9 2,600,333 + +2.4 2,600,333 + +1.9 2,600,336 - -1.4 2,600,341 - +1.1 2,600,341 - -2.4 2,600,343 - -0.1 2,600,397 + +1.4 2,600,424 + -2.1 2,600,451 + -1.5 2,600,472 - MPMX20_02460 0.13 -0.6 2,600,479 + MPMX20_02460 0.14 -1.5 2,600,479 + MPMX20_02460 0.14 -1.7 2,600,479 + MPMX20_02460 0.14 -1.9 2,600,479 + MPMX20_02460 0.14 -0.4 2,600,479 + MPMX20_02460 0.14 +0.9 2,600,479 + MPMX20_02460 0.14 -0.3 2,600,479 + MPMX20_02460 0.14 +0.9 2,600,479 + MPMX20_02460 0.14 -0.5 2,600,484 + MPMX20_02460 0.14 +0.2 2,600,484 + MPMX20_02460 0.14 +2.1 2,600,487 - MPMX20_02460 0.15 +0.4 2,600,487 - MPMX20_02460 0.15 +0.7 2,600,487 - MPMX20_02460 0.15 -0.8 2,600,487 - MPMX20_02460 0.15 -0.9 2,600,487 - MPMX20_02460 0.15 -1.3 2,600,487 - MPMX20_02460 0.15 +1.4 2,600,487 - MPMX20_02460 0.15 -2.9 2,600,487 - MPMX20_02460 0.15 -1.1 2,600,487 - MPMX20_02460 0.15 +0.9 2,600,487 - MPMX20_02460 0.15 -1.2 2,600,487 - MPMX20_02460 0.15 +0.1 2,600,487 - MPMX20_02460 0.15 +0.6 2,600,487 - MPMX20_02460 0.15 +1.2 2,600,487 - MPMX20_02460 0.15 -1.7 2,600,487 - MPMX20_02460 0.15 -0.6 2,600,487 - MPMX20_02460 0.15 -0.9 2,600,487 - MPMX20_02460 0.15 +1.0 2,600,490 + MPMX20_02460 0.15 -2.0 2,600,490 + MPMX20_02460 0.15 -2.3 2,600,492 - MPMX20_02460 0.16 +2.7 2,600,492 - MPMX20_02460 0.16 +0.4 2,600,537 - MPMX20_02460 0.22 +1.7 2,600,589 - MPMX20_02460 0.30 +1.4 2,600,630 - MPMX20_02460 0.36 +0.9 2,600,710 - MPMX20_02460 0.48 -1.8 2,600,714 + MPMX20_02460 0.48 -1.8 2,600,722 - MPMX20_02460 0.50 -0.9 2,600,794 + MPMX20_02460 0.60 +1.2 2,600,830 + MPMX20_02460 0.65 -0.1 2,600,928 - MPMX20_02460 0.80 -0.4 2,600,928 - MPMX20_02460 0.80 -2.6 2,601,014 + -1.1 2,601,022 + +1.3 2,601,050 + +0.3 2,601,135 + +0.4 2,601,135 + +2.3 2,601,135 + +1.1 2,601,143 - +0.3 2,601,147 + -0.9 2,601,155 - -1.0 2,601,160 + -3.5 2,601,160 + -0.3 2,601,160 + +1.7 2,601,160 + -0.4 2,601,160 + +0.9 2,601,160 + +0.9 2,601,160 + -2.1 2,601,160 + -0.3 2,601,160 + -0.3 2,601,160 + +3.0 2,601,160 + -0.9 2,601,167 + -1.1 2,601,168 - -0.4 2,601,168 - -0.6 2,601,168 - -1.1 2,601,168 - +0.9 2,601,168 - +0.1 2,601,170 - -0.3 2,601,175 + +1.9 2,601,175 + +0.3 2,601,218 + -0.5 2,601,346 + MPMX20_02461 0.13 -2.9 2,601,354 - MPMX20_02461 0.13 -3.8 2,601,389 - MPMX20_02461 0.15 -0.7 2,601,503 + MPMX20_02461 0.20 +2.2 2,601,503 + MPMX20_02461 0.20 -0.5 2,601,504 - MPMX20_02461 0.20 +0.4 2,601,511 - MPMX20_02461 0.20 -1.3 2,601,555 + MPMX20_02461 0.22 -1.5 2,601,555 + MPMX20_02461 0.22 +0.1 2,601,556 + MPMX20_02461 0.22 -0.0 2,601,558 - MPMX20_02461 0.22 +1.4 2,601,604 + MPMX20_02461 0.24 +1.5 2,601,684 - MPMX20_02461 0.28 +0.1 2,601,749 + MPMX20_02461 0.31 +2.4 2,601,749 + MPMX20_02461 0.31 -1.5 2,601,757 - MPMX20_02461 0.31 +1.6 2,601,757 - MPMX20_02461 0.31 -1.4 2,601,793 + MPMX20_02461 0.32 +1.1 2,601,821 - MPMX20_02461 0.34 +0.9 2,601,898 + MPMX20_02461 0.37 +1.4 2,601,907 + MPMX20_02461 0.37 -0.0 2,601,907 + MPMX20_02461 0.37 -3.4 2,601,915 - MPMX20_02461 0.38 -2.1 2,601,995 + MPMX20_02461 0.41 -3.9 2,602,003 - MPMX20_02461 0.42 -2.9 2,602,040 + MPMX20_02461 0.43 -0.3 2,602,046 + MPMX20_02461 0.44 +0.4 2,602,046 - MPMX20_02461 0.44 +0.9 2,602,156 + MPMX20_02461 0.48 +2.4 2,602,275 + MPMX20_02461 0.54 +1.1 2,602,355 + MPMX20_02461 0.57 +1.9 2,602,363 - MPMX20_02461 0.57 +0.7 2,602,414 + MPMX20_02461 0.60 +0.2 2,602,425 + MPMX20_02461 0.60 -0.6 2,602,425 + MPMX20_02461 0.60 +0.3 2,602,425 + MPMX20_02461 0.60 -0.4 2,602,425 + MPMX20_02461 0.60 -1.9 2,602,433 - MPMX20_02461 0.61 +0.2 2,602,433 - MPMX20_02461 0.61 +0.0 2,602,471 - MPMX20_02461 0.62 -1.5 2,602,482 - MPMX20_02461 0.63 -0.6 2,602,500 - MPMX20_02461 0.63 +0.7 2,602,543 - MPMX20_02461 0.65 +0.4 2,602,552 + MPMX20_02461 0.66 +0.4 2,602,552 + MPMX20_02461 0.66 -1.4 2,602,560 - MPMX20_02461 0.66 -0.6 2,602,560 - MPMX20_02461 0.66 -1.1 2,602,647 + MPMX20_02461 0.70 -3.0 2,602,712 + MPMX20_02461 0.73 -0.7 2,602,792 + MPMX20_02461 0.76 -2.4 2,602,802 - MPMX20_02461 0.77 +1.7 2,602,926 + MPMX20_02461 0.82 -0.7 2,603,021 + MPMX20_02461 0.86 -0.6 2,603,135 + -2.7 2,603,156 - -0.6 2,603,170 + +0.9 2,603,201 - -0.7 2,603,208 + +1.9 2,603,208 + -0.3 2,603,208 + -1.0 2,603,216 - -1.1 2,603,216 - -0.7 2,603,216 - -0.1 2,603,216 - -2.5 2,603,216 - -0.8 2,603,216 - +0.8 2,603,296 - -0.9 2,603,296 - +0.3 2,603,329 + -0.8 2,603,403 + +4.3 2,603,436 + MPMX20_02462 0.10 +1.3 2,603,462 + MPMX20_02462 0.13 -1.6 2,603,499 + MPMX20_02462 0.16 +0.9 2,603,499 + MPMX20_02462 0.16 +1.0 2,603,499 + MPMX20_02462 0.16 -1.4 2,603,499 + MPMX20_02462 0.16 -1.7 2,603,507 - MPMX20_02462 0.17 -2.9 2,603,507 - MPMX20_02462 0.17 +0.6 2,603,507 - MPMX20_02462 0.17 +0.8 2,603,507 - MPMX20_02462 0.17 +0.3 2,603,507 - MPMX20_02462 0.17 +3.4 2,603,507 - MPMX20_02462 0.17 -0.2 2,603,507 - MPMX20_02462 0.17 +0.3 2,603,507 - MPMX20_02462 0.17 -1.4 2,603,551 - MPMX20_02462 0.21 -0.1 2,603,566 - MPMX20_02462 0.23 -0.7 2,603,566 - MPMX20_02462 0.23 -1.7 2,603,601 + MPMX20_02462 0.26 -2.0 2,603,609 - MPMX20_02462 0.27 -1.1 2,603,643 - MPMX20_02462 0.30 -2.1 2,603,674 - MPMX20_02462 0.33 +0.4 2,603,755 + MPMX20_02462 0.41 -0.7 2,603,849 + MPMX20_02462 0.50 +0.5 2,603,876 + MPMX20_02462 0.52 -2.8 2,603,884 - MPMX20_02462 0.53 -0.1 2,603,975 - MPMX20_02462 0.61 -0.9 2,603,982 - MPMX20_02462 0.62 -0.1 2,604,012 - MPMX20_02462 0.65 +0.8 2,604,070 + MPMX20_02462 0.70 -1.9 2,604,162 + MPMX20_02462 0.79 +0.4 2,604,244 - MPMX20_02462 0.87 +1.4 2,604,246 + MPMX20_02462 0.87 -0.9 2,604,246 + MPMX20_02462 0.87 +0.4 2,604,254 - MPMX20_02462 0.88 -1.3 2,604,259 + MPMX20_02462 0.88 -1.7 2,604,267 - MPMX20_02462 0.89 -1.9 2,604,267 - MPMX20_02462 0.89 +0.1
Or see this region's nucleotide sequence