Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02349 and MPMX20_02350 are separated by 67 nucleotides MPMX20_02350 and MPMX20_02351 are separated by 173 nucleotides
MPMX20_02349: MPMX20_02349 - Negative regulator of SacY activity, at 2,475,350 to 2,476,720
_02349
MPMX20_02350: MPMX20_02350 - Sucrose porin, at 2,476,788 to 2,478,305
_02350
MPMX20_02351: MPMX20_02351 - Fructokinase, at 2,478,479 to 2,479,384
_02351
Position (kb)
2476
2477
2478
2479 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2475.871 kb on - strand, within MPMX20_02349 at 2475.871 kb on - strand, within MPMX20_02349 at 2475.883 kb on - strand, within MPMX20_02349 at 2475.883 kb on - strand, within MPMX20_02349 at 2475.887 kb on + strand, within MPMX20_02349 at 2475.919 kb on + strand, within MPMX20_02349 at 2475.952 kb on + strand, within MPMX20_02349 at 2475.952 kb on + strand, within MPMX20_02349 at 2475.952 kb on - strand, within MPMX20_02349 at 2475.982 kb on + strand, within MPMX20_02349 at 2475.982 kb on + strand, within MPMX20_02349 at 2476.063 kb on - strand, within MPMX20_02349 at 2476.098 kb on - strand, within MPMX20_02349 at 2476.134 kb on + strand, within MPMX20_02349 at 2476.134 kb on + strand, within MPMX20_02349 at 2476.142 kb on - strand, within MPMX20_02349 at 2476.142 kb on - strand, within MPMX20_02349 at 2476.142 kb on - strand, within MPMX20_02349 at 2476.142 kb on - strand, within MPMX20_02349 at 2476.142 kb on - strand, within MPMX20_02349 at 2476.150 kb on + strand, within MPMX20_02349 at 2476.177 kb on + strand, within MPMX20_02349 at 2476.268 kb on - strand, within MPMX20_02349 at 2476.280 kb on + strand, within MPMX20_02349 at 2476.299 kb on + strand, within MPMX20_02349 at 2476.316 kb on + strand, within MPMX20_02349 at 2476.326 kb on + strand, within MPMX20_02349 at 2476.334 kb on - strand, within MPMX20_02349 at 2476.414 kb on + strand, within MPMX20_02349 at 2476.422 kb on - strand, within MPMX20_02349 at 2476.458 kb on - strand, within MPMX20_02349 at 2476.505 kb on - strand, within MPMX20_02349 at 2476.505 kb on - strand, within MPMX20_02349 at 2476.572 kb on + strand, within MPMX20_02349 at 2476.626 kb on + strand at 2476.649 kb on - strand at 2476.726 kb on + strand at 2476.737 kb on - strand at 2476.762 kb on + strand at 2476.762 kb on + strand at 2476.786 kb on + strand at 2476.786 kb on + strand at 2476.922 kb on + strand at 2476.930 kb on - strand at 2476.958 kb on + strand, within MPMX20_02350 at 2476.958 kb on + strand, within MPMX20_02350 at 2476.966 kb on - strand, within MPMX20_02350 at 2476.966 kb on - strand, within MPMX20_02350 at 2476.978 kb on - strand, within MPMX20_02350 at 2476.985 kb on - strand, within MPMX20_02350 at 2477.023 kb on - strand, within MPMX20_02350 at 2477.120 kb on + strand, within MPMX20_02350 at 2477.121 kb on + strand, within MPMX20_02350 at 2477.127 kb on + strand, within MPMX20_02350 at 2477.127 kb on + strand, within MPMX20_02350 at 2477.128 kb on - strand, within MPMX20_02350 at 2477.165 kb on - strand, within MPMX20_02350 at 2477.165 kb on - strand, within MPMX20_02350 at 2477.247 kb on - strand, within MPMX20_02350 at 2477.247 kb on - strand, within MPMX20_02350 at 2477.274 kb on + strand, within MPMX20_02350 at 2477.274 kb on + strand, within MPMX20_02350 at 2477.372 kb on - strand, within MPMX20_02350 at 2477.406 kb on - strand, within MPMX20_02350 at 2477.497 kb on - strand, within MPMX20_02350 at 2477.516 kb on - strand, within MPMX20_02350 at 2477.617 kb on + strand, within MPMX20_02350 at 2477.644 kb on - strand, within MPMX20_02350 at 2477.741 kb on + strand, within MPMX20_02350 at 2477.766 kb on - strand, within MPMX20_02350 at 2477.783 kb on - strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.824 kb on + strand, within MPMX20_02350 at 2477.825 kb on + strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.832 kb on - strand, within MPMX20_02350 at 2477.845 kb on + strand, within MPMX20_02350 at 2477.853 kb on - strand, within MPMX20_02350 at 2477.865 kb on - strand, within MPMX20_02350 at 2477.879 kb on + strand, within MPMX20_02350 at 2477.890 kb on - strand, within MPMX20_02350 at 2477.961 kb on - strand, within MPMX20_02350 at 2478.001 kb on - strand, within MPMX20_02350 at 2478.001 kb on - strand, within MPMX20_02350 at 2478.038 kb on - strand, within MPMX20_02350 at 2478.043 kb on + strand, within MPMX20_02350 at 2478.048 kb on - strand, within MPMX20_02350 at 2478.117 kb on - strand, within MPMX20_02350 at 2478.202 kb on - strand at 2478.442 kb on + strand at 2478.500 kb on - strand at 2478.548 kb on - strand at 2478.550 kb on + strand at 2478.553 kb on - strand at 2478.558 kb on - strand at 2478.619 kb on - strand, within MPMX20_02351 at 2478.632 kb on + strand, within MPMX20_02351 at 2478.640 kb on - strand, within MPMX20_02351 at 2478.640 kb on - strand, within MPMX20_02351 at 2478.720 kb on + strand, within MPMX20_02351 at 2478.780 kb on + strand, within MPMX20_02351 at 2478.841 kb on + strand, within MPMX20_02351 at 2478.862 kb on + strand, within MPMX20_02351 at 2478.870 kb on - strand, within MPMX20_02351 at 2478.988 kb on + strand, within MPMX20_02351 at 2478.988 kb on + strand, within MPMX20_02351 at 2478.996 kb on - strand, within MPMX20_02351 at 2479.000 kb on + strand, within MPMX20_02351 at 2479.000 kb on + strand, within MPMX20_02351 at 2479.030 kb on - strand, within MPMX20_02351 at 2479.035 kb on - strand, within MPMX20_02351 at 2479.087 kb on + strand, within MPMX20_02351 at 2479.176 kb on + strand, within MPMX20_02351 at 2479.287 kb on + strand, within MPMX20_02351
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,475,871 - MPMX20_02349 0.38 -2.6 2,475,871 - MPMX20_02349 0.38 -1.1 2,475,883 - MPMX20_02349 0.39 -2.4 2,475,883 - MPMX20_02349 0.39 +2.1 2,475,887 + MPMX20_02349 0.39 +0.9 2,475,919 + MPMX20_02349 0.42 -2.3 2,475,952 + MPMX20_02349 0.44 -0.5 2,475,952 + MPMX20_02349 0.44 -0.8 2,475,952 - MPMX20_02349 0.44 -3.0 2,475,982 + MPMX20_02349 0.46 +0.8 2,475,982 + MPMX20_02349 0.46 +2.0 2,476,063 - MPMX20_02349 0.52 +0.7 2,476,098 - MPMX20_02349 0.55 +1.5 2,476,134 + MPMX20_02349 0.57 +0.1 2,476,134 + MPMX20_02349 0.57 -1.3 2,476,142 - MPMX20_02349 0.58 -2.5 2,476,142 - MPMX20_02349 0.58 +1.1 2,476,142 - MPMX20_02349 0.58 +0.2 2,476,142 - MPMX20_02349 0.58 -0.7 2,476,142 - MPMX20_02349 0.58 +0.2 2,476,150 + MPMX20_02349 0.58 +3.3 2,476,177 + MPMX20_02349 0.60 +1.9 2,476,268 - MPMX20_02349 0.67 +3.3 2,476,280 + MPMX20_02349 0.68 +0.3 2,476,299 + MPMX20_02349 0.69 +0.9 2,476,316 + MPMX20_02349 0.70 -0.1 2,476,326 + MPMX20_02349 0.71 +1.3 2,476,334 - MPMX20_02349 0.72 +0.4 2,476,414 + MPMX20_02349 0.78 -1.8 2,476,422 - MPMX20_02349 0.78 +0.1 2,476,458 - MPMX20_02349 0.81 +0.6 2,476,505 - MPMX20_02349 0.84 -1.8 2,476,505 - MPMX20_02349 0.84 -1.3 2,476,572 + MPMX20_02349 0.89 -0.1 2,476,626 + +0.9 2,476,649 - -0.8 2,476,726 + +3.2 2,476,737 - +0.7 2,476,762 + -1.5 2,476,762 + -0.2 2,476,786 + -0.9 2,476,786 + +1.2 2,476,922 + -0.1 2,476,930 - +3.1 2,476,958 + MPMX20_02350 0.11 -0.5 2,476,958 + MPMX20_02350 0.11 +0.5 2,476,966 - MPMX20_02350 0.12 +0.2 2,476,966 - MPMX20_02350 0.12 +2.1 2,476,978 - MPMX20_02350 0.13 +1.8 2,476,985 - MPMX20_02350 0.13 -2.3 2,477,023 - MPMX20_02350 0.15 +0.3 2,477,120 + MPMX20_02350 0.22 -0.6 2,477,121 + MPMX20_02350 0.22 -2.1 2,477,127 + MPMX20_02350 0.22 -1.5 2,477,127 + MPMX20_02350 0.22 -0.2 2,477,128 - MPMX20_02350 0.22 -0.2 2,477,165 - MPMX20_02350 0.25 -0.5 2,477,165 - MPMX20_02350 0.25 +1.8 2,477,247 - MPMX20_02350 0.30 -1.3 2,477,247 - MPMX20_02350 0.30 +0.0 2,477,274 + MPMX20_02350 0.32 -1.6 2,477,274 + MPMX20_02350 0.32 -1.3 2,477,372 - MPMX20_02350 0.38 +0.7 2,477,406 - MPMX20_02350 0.41 +1.5 2,477,497 - MPMX20_02350 0.47 -0.8 2,477,516 - MPMX20_02350 0.48 +1.9 2,477,617 + MPMX20_02350 0.55 -1.8 2,477,644 - MPMX20_02350 0.56 -0.5 2,477,741 + MPMX20_02350 0.63 +0.1 2,477,766 - MPMX20_02350 0.64 -0.3 2,477,783 - MPMX20_02350 0.66 -1.3 2,477,824 + MPMX20_02350 0.68 -2.8 2,477,824 + MPMX20_02350 0.68 -1.0 2,477,824 + MPMX20_02350 0.68 +0.2 2,477,824 + MPMX20_02350 0.68 -0.5 2,477,825 + MPMX20_02350 0.68 -2.7 2,477,832 - MPMX20_02350 0.69 -0.5 2,477,832 - MPMX20_02350 0.69 +1.4 2,477,832 - MPMX20_02350 0.69 +2.0 2,477,832 - MPMX20_02350 0.69 -0.5 2,477,832 - MPMX20_02350 0.69 -0.3 2,477,832 - MPMX20_02350 0.69 +0.2 2,477,832 - MPMX20_02350 0.69 -0.8 2,477,832 - MPMX20_02350 0.69 -0.4 2,477,832 - MPMX20_02350 0.69 -2.2 2,477,832 - MPMX20_02350 0.69 -1.4 2,477,832 - MPMX20_02350 0.69 +0.9 2,477,845 + MPMX20_02350 0.70 -0.3 2,477,853 - MPMX20_02350 0.70 -1.4 2,477,865 - MPMX20_02350 0.71 +0.2 2,477,879 + MPMX20_02350 0.72 -2.8 2,477,890 - MPMX20_02350 0.73 +1.3 2,477,961 - MPMX20_02350 0.77 -2.6 2,478,001 - MPMX20_02350 0.80 -0.9 2,478,001 - MPMX20_02350 0.80 -0.5 2,478,038 - MPMX20_02350 0.82 +2.2 2,478,043 + MPMX20_02350 0.83 -0.0 2,478,048 - MPMX20_02350 0.83 -2.5 2,478,117 - MPMX20_02350 0.88 -2.5 2,478,202 - -2.9 2,478,442 + +1.7 2,478,500 - -0.3 2,478,548 - -1.8 2,478,550 + -0.1 2,478,553 - -0.0 2,478,558 - +1.9 2,478,619 - MPMX20_02351 0.15 +1.5 2,478,632 + MPMX20_02351 0.17 -1.0 2,478,640 - MPMX20_02351 0.18 -1.9 2,478,640 - MPMX20_02351 0.18 +1.2 2,478,720 + MPMX20_02351 0.27 -2.9 2,478,780 + MPMX20_02351 0.33 -1.2 2,478,841 + MPMX20_02351 0.40 -2.3 2,478,862 + MPMX20_02351 0.42 -0.4 2,478,870 - MPMX20_02351 0.43 -1.5 2,478,988 + MPMX20_02351 0.56 +1.2 2,478,988 + MPMX20_02351 0.56 +0.2 2,478,996 - MPMX20_02351 0.57 +1.9 2,479,000 + MPMX20_02351 0.58 -0.9 2,479,000 + MPMX20_02351 0.58 -0.1 2,479,030 - MPMX20_02351 0.61 -1.5 2,479,035 - MPMX20_02351 0.61 -0.3 2,479,087 + MPMX20_02351 0.67 -1.4 2,479,176 + MPMX20_02351 0.77 -0.7 2,479,287 + MPMX20_02351 0.89 -0.9
Or see this region's nucleotide sequence