Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01620

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01618 and MPMX20_01619 are separated by 7 nucleotidesMPMX20_01619 and MPMX20_01620 are separated by 11 nucleotidesMPMX20_01620 and MPMX20_01621 overlap by 4 nucleotidesMPMX20_01621 and MPMX20_01622 are separated by 88 nucleotides MPMX20_01618: MPMX20_01618 - hypothetical protein, at 1,710,481 to 1,711,038 _01618 MPMX20_01619: MPMX20_01619 - HTH-type transcriptional activator RhaS, at 1,711,046 to 1,711,837 _01619 MPMX20_01620: MPMX20_01620 - Acylphosphatase, at 1,711,849 to 1,712,130 _01620 MPMX20_01621: MPMX20_01621 - Sulfurtransferase TusE, at 1,712,127 to 1,712,456 _01621 MPMX20_01622: MPMX20_01622 - Modulator of FtsH protease YccA, at 1,712,545 to 1,713,204 _01622 Position (kb) 1711 1712 1713Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1710.887 kb on + strand, within MPMX20_01618at 1710.887 kb on + strand, within MPMX20_01618at 1710.888 kb on + strand, within MPMX20_01618at 1710.977 kb on + strand, within MPMX20_01618at 1710.977 kb on + strand, within MPMX20_01618at 1710.985 kb on - strandat 1710.997 kb on + strandat 1711.013 kb on + strandat 1711.013 kb on + strandat 1711.013 kb on + strandat 1711.021 kb on - strandat 1711.021 kb on - strandat 1711.088 kb on + strandat 1711.094 kb on - strandat 1711.096 kb on - strandat 1711.128 kb on - strand, within MPMX20_01619at 1711.142 kb on - strand, within MPMX20_01619at 1711.160 kb on + strand, within MPMX20_01619at 1711.175 kb on - strand, within MPMX20_01619at 1711.282 kb on - strand, within MPMX20_01619at 1711.324 kb on + strand, within MPMX20_01619at 1711.332 kb on - strand, within MPMX20_01619at 1711.361 kb on + strand, within MPMX20_01619at 1711.369 kb on - strand, within MPMX20_01619at 1711.377 kb on + strand, within MPMX20_01619at 1711.377 kb on + strand, within MPMX20_01619at 1711.382 kb on + strand, within MPMX20_01619at 1711.382 kb on + strand, within MPMX20_01619at 1711.390 kb on - strand, within MPMX20_01619at 1711.390 kb on - strand, within MPMX20_01619at 1711.428 kb on - strand, within MPMX20_01619at 1711.514 kb on - strand, within MPMX20_01619at 1711.585 kb on + strand, within MPMX20_01619at 1711.585 kb on + strand, within MPMX20_01619at 1711.585 kb on + strand, within MPMX20_01619at 1711.590 kb on + strand, within MPMX20_01619at 1711.593 kb on - strand, within MPMX20_01619at 1711.593 kb on - strand, within MPMX20_01619at 1711.593 kb on - strand, within MPMX20_01619at 1711.593 kb on - strand, within MPMX20_01619at 1711.593 kb on - strand, within MPMX20_01619at 1711.595 kb on + strand, within MPMX20_01619at 1711.603 kb on - strand, within MPMX20_01619at 1711.603 kb on - strand, within MPMX20_01619at 1711.627 kb on - strand, within MPMX20_01619at 1711.634 kb on + strand, within MPMX20_01619at 1711.682 kb on + strand, within MPMX20_01619at 1711.690 kb on + strand, within MPMX20_01619at 1711.805 kb on + strandat 1711.805 kb on + strandat 1711.805 kb on + strandat 1711.831 kb on + strandat 1711.831 kb on + strandat 1711.831 kb on + strandat 1711.831 kb on + strandat 1711.839 kb on - strandat 1711.883 kb on + strand, within MPMX20_01620at 1711.895 kb on - strand, within MPMX20_01620at 1711.896 kb on - strand, within MPMX20_01620at 1711.905 kb on + strand, within MPMX20_01620at 1711.920 kb on + strand, within MPMX20_01620at 1711.928 kb on - strand, within MPMX20_01620at 1711.966 kb on + strand, within MPMX20_01620at 1711.966 kb on + strand, within MPMX20_01620at 1711.991 kb on - strand, within MPMX20_01620at 1712.031 kb on + strand, within MPMX20_01620at 1712.071 kb on + strand, within MPMX20_01620at 1712.557 kb on + strandat 1712.563 kb on + strandat 1712.571 kb on - strandat 1712.607 kb on - strandat 1712.614 kb on + strand, within MPMX20_01622at 1712.651 kb on + strand, within MPMX20_01622at 1712.665 kb on - strand, within MPMX20_01622at 1712.684 kb on - strand, within MPMX20_01622at 1712.722 kb on + strand, within MPMX20_01622at 1712.722 kb on + strand, within MPMX20_01622at 1712.730 kb on - strand, within MPMX20_01622at 1712.730 kb on - strand, within MPMX20_01622at 1712.809 kb on + strand, within MPMX20_01622at 1712.862 kb on + strand, within MPMX20_01622at 1712.872 kb on + strand, within MPMX20_01622at 1712.932 kb on + strand, within MPMX20_01622at 1712.932 kb on + strand, within MPMX20_01622at 1712.945 kb on - strand, within MPMX20_01622at 1713.016 kb on - strand, within MPMX20_01622at 1713.023 kb on + strand, within MPMX20_01622at 1713.037 kb on - strand, within MPMX20_01622at 1713.046 kb on + strand, within MPMX20_01622at 1713.054 kb on - strand, within MPMX20_01622at 1713.064 kb on - strand, within MPMX20_01622at 1713.067 kb on + strand, within MPMX20_01622at 1713.075 kb on - strand, within MPMX20_01622at 1713.085 kb on - strand, within MPMX20_01622at 1713.085 kb on - strand, within MPMX20_01622at 1713.085 kb on - strand, within MPMX20_01622at 1713.085 kb on - strand, within MPMX20_01622at 1713.085 kb on - strand, within MPMX20_01622

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,710,887 + MPMX20_01618 0.73 -0.8
1,710,887 + MPMX20_01618 0.73 +0.4
1,710,888 + MPMX20_01618 0.73 -1.2
1,710,977 + MPMX20_01618 0.89 +1.2
1,710,977 + MPMX20_01618 0.89 -3.4
1,710,985 - -0.2
1,710,997 + -2.2
1,711,013 + -0.1
1,711,013 + +0.0
1,711,013 + +0.3
1,711,021 - -0.7
1,711,021 - +3.2
1,711,088 + +0.2
1,711,094 - -1.9
1,711,096 - -1.2
1,711,128 - MPMX20_01619 0.10 -2.1
1,711,142 - MPMX20_01619 0.12 +0.3
1,711,160 + MPMX20_01619 0.14 +2.7
1,711,175 - MPMX20_01619 0.16 -2.0
1,711,282 - MPMX20_01619 0.30 +1.3
1,711,324 + MPMX20_01619 0.35 +1.7
1,711,332 - MPMX20_01619 0.36 -0.2
1,711,361 + MPMX20_01619 0.40 +1.5
1,711,369 - MPMX20_01619 0.41 +0.2
1,711,377 + MPMX20_01619 0.42 -1.1
1,711,377 + MPMX20_01619 0.42 +0.2
1,711,382 + MPMX20_01619 0.42 -0.7
1,711,382 + MPMX20_01619 0.42 +0.5
1,711,390 - MPMX20_01619 0.43 -2.8
1,711,390 - MPMX20_01619 0.43 +1.0
1,711,428 - MPMX20_01619 0.48 -2.0
1,711,514 - MPMX20_01619 0.59 -0.7
1,711,585 + MPMX20_01619 0.68 +1.3
1,711,585 + MPMX20_01619 0.68 -0.6
1,711,585 + MPMX20_01619 0.68 -0.8
1,711,590 + MPMX20_01619 0.69 -1.1
1,711,593 - MPMX20_01619 0.69 -1.8
1,711,593 - MPMX20_01619 0.69 -1.2
1,711,593 - MPMX20_01619 0.69 +1.2
1,711,593 - MPMX20_01619 0.69 -1.1
1,711,593 - MPMX20_01619 0.69 +0.2
1,711,595 + MPMX20_01619 0.69 -1.2
1,711,603 - MPMX20_01619 0.70 +1.4
1,711,603 - MPMX20_01619 0.70 -2.4
1,711,627 - MPMX20_01619 0.73 +1.1
1,711,634 + MPMX20_01619 0.74 -2.0
1,711,682 + MPMX20_01619 0.80 -0.1
1,711,690 + MPMX20_01619 0.81 -0.5
1,711,805 + -1.1
1,711,805 + -0.2
1,711,805 + +0.3
1,711,831 + -2.4
1,711,831 + -0.7
1,711,831 + -1.9
1,711,831 + +1.4
1,711,839 - +0.8
1,711,883 + MPMX20_01620 0.12 +2.3
1,711,895 - MPMX20_01620 0.16 -0.3
1,711,896 - MPMX20_01620 0.17 +0.6
1,711,905 + MPMX20_01620 0.20 -0.2
1,711,920 + MPMX20_01620 0.25 -0.2
1,711,928 - MPMX20_01620 0.28 -1.6
1,711,966 + MPMX20_01620 0.41 -0.2
1,711,966 + MPMX20_01620 0.41 +0.3
1,711,991 - MPMX20_01620 0.50 +0.3
1,712,031 + MPMX20_01620 0.65 -2.5
1,712,071 + MPMX20_01620 0.79 -1.4
1,712,557 + +0.3
1,712,563 + -0.2
1,712,571 - -1.1
1,712,607 - +0.3
1,712,614 + MPMX20_01622 0.10 -2.0
1,712,651 + MPMX20_01622 0.16 -2.0
1,712,665 - MPMX20_01622 0.18 -1.7
1,712,684 - MPMX20_01622 0.21 -0.9
1,712,722 + MPMX20_01622 0.27 -1.4
1,712,722 + MPMX20_01622 0.27 -2.5
1,712,730 - MPMX20_01622 0.28 -0.9
1,712,730 - MPMX20_01622 0.28 +1.5
1,712,809 + MPMX20_01622 0.40 +1.3
1,712,862 + MPMX20_01622 0.48 -0.8
1,712,872 + MPMX20_01622 0.50 +1.1
1,712,932 + MPMX20_01622 0.59 -1.1
1,712,932 + MPMX20_01622 0.59 +0.8
1,712,945 - MPMX20_01622 0.61 +0.7
1,713,016 - MPMX20_01622 0.71 +2.6
1,713,023 + MPMX20_01622 0.72 -2.6
1,713,037 - MPMX20_01622 0.75 -2.5
1,713,046 + MPMX20_01622 0.76 -0.7
1,713,054 - MPMX20_01622 0.77 -2.6
1,713,064 - MPMX20_01622 0.79 -1.2
1,713,067 + MPMX20_01622 0.79 -0.5
1,713,075 - MPMX20_01622 0.80 -0.3
1,713,085 - MPMX20_01622 0.82 -0.4
1,713,085 - MPMX20_01622 0.82 -1.2
1,713,085 - MPMX20_01622 0.82 -2.1
1,713,085 - MPMX20_01622 0.82 +0.3
1,713,085 - MPMX20_01622 0.82 +0.1

Or see this region's nucleotide sequence