Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01611

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01610 and MPMX20_01611 are separated by 19 nucleotidesMPMX20_01611 and MPMX20_01612 are separated by 123 nucleotides MPMX20_01610: MPMX20_01610 - Inner membrane protein YccS, at 1,702,046 to 1,704,208 _01610 MPMX20_01611: MPMX20_01611 - Inner membrane protein YccF, at 1,704,228 to 1,704,674 _01611 MPMX20_01612: MPMX20_01612 - DNA helicase IV, at 1,704,798 to 1,706,852 _01612 Position (kb) 1704 1705Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1703.239 kb on + strand, within MPMX20_01610at 1703.250 kb on + strand, within MPMX20_01610at 1703.366 kb on - strand, within MPMX20_01610at 1703.436 kb on - strand, within MPMX20_01610at 1703.436 kb on - strand, within MPMX20_01610at 1703.436 kb on - strand, within MPMX20_01610at 1703.466 kb on + strand, within MPMX20_01610at 1703.466 kb on + strand, within MPMX20_01610at 1703.466 kb on + strand, within MPMX20_01610at 1703.466 kb on + strand, within MPMX20_01610at 1703.466 kb on + strand, within MPMX20_01610at 1703.472 kb on - strand, within MPMX20_01610at 1703.474 kb on - strand, within MPMX20_01610at 1703.474 kb on - strand, within MPMX20_01610at 1703.474 kb on - strand, within MPMX20_01610at 1703.474 kb on - strand, within MPMX20_01610at 1703.474 kb on - strand, within MPMX20_01610at 1703.500 kb on - strand, within MPMX20_01610at 1703.540 kb on + strand, within MPMX20_01610at 1703.553 kb on + strand, within MPMX20_01610at 1703.705 kb on + strand, within MPMX20_01610at 1703.705 kb on + strand, within MPMX20_01610at 1703.705 kb on + strand, within MPMX20_01610at 1703.705 kb on + strand, within MPMX20_01610at 1703.705 kb on + strand, within MPMX20_01610at 1703.710 kb on + strand, within MPMX20_01610at 1703.713 kb on - strand, within MPMX20_01610at 1703.713 kb on - strand, within MPMX20_01610at 1703.713 kb on - strand, within MPMX20_01610at 1703.755 kb on + strand, within MPMX20_01610at 1703.755 kb on + strand, within MPMX20_01610at 1703.755 kb on + strand, within MPMX20_01610at 1703.823 kb on - strand, within MPMX20_01610at 1703.871 kb on + strand, within MPMX20_01610at 1703.879 kb on - strand, within MPMX20_01610at 1703.879 kb on - strand, within MPMX20_01610at 1703.881 kb on + strand, within MPMX20_01610at 1703.881 kb on + strand, within MPMX20_01610at 1703.889 kb on - strand, within MPMX20_01610at 1703.889 kb on - strand, within MPMX20_01610at 1703.920 kb on + strand, within MPMX20_01610at 1703.928 kb on - strand, within MPMX20_01610at 1703.928 kb on - strand, within MPMX20_01610at 1703.928 kb on - strand, within MPMX20_01610at 1703.928 kb on - strand, within MPMX20_01610at 1703.941 kb on + strand, within MPMX20_01610at 1703.941 kb on + strand, within MPMX20_01610at 1703.962 kb on + strand, within MPMX20_01610at 1703.965 kb on - strand, within MPMX20_01610at 1703.970 kb on - strand, within MPMX20_01610at 1703.970 kb on - strand, within MPMX20_01610at 1703.970 kb on - strand, within MPMX20_01610at 1704.017 kb on - strandat 1704.075 kb on - strandat 1704.075 kb on - strandat 1704.075 kb on - strandat 1704.126 kb on + strandat 1704.126 kb on + strandat 1704.126 kb on + strandat 1704.163 kb on + strandat 1704.173 kb on + strandat 1704.181 kb on - strandat 1704.269 kb on + strandat 1704.289 kb on + strand, within MPMX20_01611at 1704.312 kb on - strand, within MPMX20_01611at 1704.372 kb on - strand, within MPMX20_01611at 1704.374 kb on + strand, within MPMX20_01611at 1704.405 kb on - strand, within MPMX20_01611at 1704.407 kb on + strand, within MPMX20_01611at 1704.415 kb on - strand, within MPMX20_01611at 1704.415 kb on - strand, within MPMX20_01611at 1704.459 kb on + strand, within MPMX20_01611at 1704.467 kb on - strand, within MPMX20_01611at 1704.508 kb on + strand, within MPMX20_01611at 1704.561 kb on + strand, within MPMX20_01611at 1704.562 kb on + strand, within MPMX20_01611at 1704.569 kb on - strand, within MPMX20_01611at 1704.570 kb on - strand, within MPMX20_01611at 1704.589 kb on + strand, within MPMX20_01611at 1704.589 kb on + strand, within MPMX20_01611at 1704.665 kb on - strandat 1704.680 kb on - strandat 1704.698 kb on + strandat 1704.732 kb on + strandat 1704.740 kb on + strandat 1704.740 kb on + strandat 1704.740 kb on + strandat 1704.740 kb on + strandat 1704.740 kb on + strandat 1704.740 kb on + strandat 1704.748 kb on - strandat 1704.748 kb on - strandat 1704.748 kb on - strandat 1704.748 kb on - strandat 1704.748 kb on - strandat 1704.778 kb on - strandat 1704.834 kb on + strandat 1704.836 kb on - strandat 1704.851 kb on - strandat 1704.853 kb on + strandat 1704.861 kb on - strandat 1704.863 kb on + strandat 1704.946 kb on - strandat 1704.953 kb on + strandat 1704.953 kb on + strandat 1704.986 kb on + strandat 1705.009 kb on + strand, within MPMX20_01612at 1705.017 kb on - strand, within MPMX20_01612at 1705.019 kb on + strand, within MPMX20_01612at 1705.028 kb on - strand, within MPMX20_01612at 1705.057 kb on + strand, within MPMX20_01612at 1705.063 kb on - strand, within MPMX20_01612at 1705.068 kb on - strand, within MPMX20_01612at 1705.072 kb on + strand, within MPMX20_01612at 1705.214 kb on + strand, within MPMX20_01612at 1705.261 kb on - strand, within MPMX20_01612at 1705.277 kb on + strand, within MPMX20_01612at 1705.277 kb on + strand, within MPMX20_01612at 1705.277 kb on + strand, within MPMX20_01612at 1705.282 kb on + strand, within MPMX20_01612at 1705.292 kb on - strand, within MPMX20_01612at 1705.346 kb on - strand, within MPMX20_01612at 1705.378 kb on - strand, within MPMX20_01612at 1705.390 kb on + strand, within MPMX20_01612at 1705.393 kb on - strand, within MPMX20_01612at 1705.398 kb on - strand, within MPMX20_01612at 1705.398 kb on - strand, within MPMX20_01612at 1705.398 kb on - strand, within MPMX20_01612at 1705.400 kb on + strand, within MPMX20_01612at 1705.435 kb on - strand, within MPMX20_01612at 1705.505 kb on + strand, within MPMX20_01612at 1705.507 kb on - strand, within MPMX20_01612at 1705.635 kb on - strand, within MPMX20_01612at 1705.637 kb on + strand, within MPMX20_01612at 1705.642 kb on + strand, within MPMX20_01612at 1705.642 kb on + strand, within MPMX20_01612at 1705.647 kb on + strand, within MPMX20_01612

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,703,239 + MPMX20_01610 0.55 -3.5
1,703,250 + MPMX20_01610 0.56 +0.5
1,703,366 - MPMX20_01610 0.61 +0.8
1,703,436 - MPMX20_01610 0.64 +0.2
1,703,436 - MPMX20_01610 0.64 -2.5
1,703,436 - MPMX20_01610 0.64 -1.6
1,703,466 + MPMX20_01610 0.66 -0.5
1,703,466 + MPMX20_01610 0.66 +0.4
1,703,466 + MPMX20_01610 0.66 +5.0
1,703,466 + MPMX20_01610 0.66 +0.7
1,703,466 + MPMX20_01610 0.66 -2.4
1,703,472 - MPMX20_01610 0.66 +0.3
1,703,474 - MPMX20_01610 0.66 -0.1
1,703,474 - MPMX20_01610 0.66 -1.6
1,703,474 - MPMX20_01610 0.66 -0.5
1,703,474 - MPMX20_01610 0.66 -3.3
1,703,474 - MPMX20_01610 0.66 -1.6
1,703,500 - MPMX20_01610 0.67 -2.0
1,703,540 + MPMX20_01610 0.69 -0.8
1,703,553 + MPMX20_01610 0.70 -2.3
1,703,705 + MPMX20_01610 0.77 -1.4
1,703,705 + MPMX20_01610 0.77 +0.9
1,703,705 + MPMX20_01610 0.77 +1.2
1,703,705 + MPMX20_01610 0.77 -0.7
1,703,705 + MPMX20_01610 0.77 -1.8
1,703,710 + MPMX20_01610 0.77 -0.5
1,703,713 - MPMX20_01610 0.77 -0.8
1,703,713 - MPMX20_01610 0.77 +0.1
1,703,713 - MPMX20_01610 0.77 +1.1
1,703,755 + MPMX20_01610 0.79 -0.2
1,703,755 + MPMX20_01610 0.79 -1.5
1,703,755 + MPMX20_01610 0.79 -2.5
1,703,823 - MPMX20_01610 0.82 +2.4
1,703,871 + MPMX20_01610 0.84 +1.6
1,703,879 - MPMX20_01610 0.85 -1.8
1,703,879 - MPMX20_01610 0.85 +1.3
1,703,881 + MPMX20_01610 0.85 +0.2
1,703,881 + MPMX20_01610 0.85 +1.2
1,703,889 - MPMX20_01610 0.85 +2.3
1,703,889 - MPMX20_01610 0.85 +0.2
1,703,920 + MPMX20_01610 0.87 +0.0
1,703,928 - MPMX20_01610 0.87 -0.4
1,703,928 - MPMX20_01610 0.87 +1.2
1,703,928 - MPMX20_01610 0.87 -3.0
1,703,928 - MPMX20_01610 0.87 -0.0
1,703,941 + MPMX20_01610 0.88 -1.7
1,703,941 + MPMX20_01610 0.88 -2.2
1,703,962 + MPMX20_01610 0.89 -1.8
1,703,965 - MPMX20_01610 0.89 -0.2
1,703,970 - MPMX20_01610 0.89 +2.2
1,703,970 - MPMX20_01610 0.89 -1.5
1,703,970 - MPMX20_01610 0.89 +2.9
1,704,017 - +0.3
1,704,075 - +0.4
1,704,075 - -3.2
1,704,075 - +0.9
1,704,126 + +0.0
1,704,126 + -1.9
1,704,126 + -1.2
1,704,163 + +0.3
1,704,173 + -1.5
1,704,181 - -1.1
1,704,269 + +1.6
1,704,289 + MPMX20_01611 0.14 -2.8
1,704,312 - MPMX20_01611 0.19 +0.0
1,704,372 - MPMX20_01611 0.32 -1.1
1,704,374 + MPMX20_01611 0.33 -1.5
1,704,405 - MPMX20_01611 0.40 -0.5
1,704,407 + MPMX20_01611 0.40 -1.5
1,704,415 - MPMX20_01611 0.42 -3.4
1,704,415 - MPMX20_01611 0.42 -0.7
1,704,459 + MPMX20_01611 0.52 -1.1
1,704,467 - MPMX20_01611 0.53 -1.5
1,704,508 + MPMX20_01611 0.63 +2.6
1,704,561 + MPMX20_01611 0.74 +0.8
1,704,562 + MPMX20_01611 0.75 -0.2
1,704,569 - MPMX20_01611 0.76 -1.6
1,704,570 - MPMX20_01611 0.77 -0.5
1,704,589 + MPMX20_01611 0.81 -4.1
1,704,589 + MPMX20_01611 0.81 -1.5
1,704,665 - +0.3
1,704,680 - +0.0
1,704,698 + -2.5
1,704,732 + -0.7
1,704,740 + -2.6
1,704,740 + -1.9
1,704,740 + +0.9
1,704,740 + +0.6
1,704,740 + -1.8
1,704,740 + +0.5
1,704,748 - +1.0
1,704,748 - +0.5
1,704,748 - +1.1
1,704,748 - -0.7
1,704,748 - +1.3
1,704,778 - +2.9
1,704,834 + -0.6
1,704,836 - -0.4
1,704,851 - -1.0
1,704,853 + +0.1
1,704,861 - -1.4
1,704,863 + +1.3
1,704,946 - +1.3
1,704,953 + -0.0
1,704,953 + -0.2
1,704,986 + -0.8
1,705,009 + MPMX20_01612 0.10 -1.0
1,705,017 - MPMX20_01612 0.11 +4.5
1,705,019 + MPMX20_01612 0.11 +1.8
1,705,028 - MPMX20_01612 0.11 -2.0
1,705,057 + MPMX20_01612 0.13 -1.7
1,705,063 - MPMX20_01612 0.13 -1.7
1,705,068 - MPMX20_01612 0.13 +0.8
1,705,072 + MPMX20_01612 0.13 -2.0
1,705,214 + MPMX20_01612 0.20 -0.7
1,705,261 - MPMX20_01612 0.23 -2.3
1,705,277 + MPMX20_01612 0.23 -1.4
1,705,277 + MPMX20_01612 0.23 -1.2
1,705,277 + MPMX20_01612 0.23 +0.0
1,705,282 + MPMX20_01612 0.24 +0.0
1,705,292 - MPMX20_01612 0.24 -1.5
1,705,346 - MPMX20_01612 0.27 -1.1
1,705,378 - MPMX20_01612 0.28 -2.2
1,705,390 + MPMX20_01612 0.29 +0.1
1,705,393 - MPMX20_01612 0.29 -0.2
1,705,398 - MPMX20_01612 0.29 -1.0
1,705,398 - MPMX20_01612 0.29 -0.2
1,705,398 - MPMX20_01612 0.29 +2.0
1,705,400 + MPMX20_01612 0.29 +0.5
1,705,435 - MPMX20_01612 0.31 +1.9
1,705,505 + MPMX20_01612 0.34 -0.2
1,705,507 - MPMX20_01612 0.35 -0.4
1,705,635 - MPMX20_01612 0.41 -1.5
1,705,637 + MPMX20_01612 0.41 +0.8
1,705,642 + MPMX20_01612 0.41 +0.8
1,705,642 + MPMX20_01612 0.41 -1.0
1,705,647 + MPMX20_01612 0.41 +1.6

Or see this region's nucleotide sequence