Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01229 and MPMX20_01230 are separated by 13 nucleotides MPMX20_01230 and MPMX20_01231 are separated by 128 nucleotides
MPMX20_01229: MPMX20_01229 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 1,286,048 to 1,287,520
_01229
MPMX20_01230: MPMX20_01230 - HTH-type transcriptional regulator BetI, at 1,287,534 to 1,288,121
_01230
MPMX20_01231: MPMX20_01231 - High-affinity choline transport protein, at 1,288,250 to 1,290,283
_01231
Position (kb)
1287
1288
1289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1286.539 kb on - strand, within MPMX20_01229 at 1286.666 kb on + strand, within MPMX20_01229 at 1286.871 kb on + strand, within MPMX20_01229 at 1286.871 kb on + strand, within MPMX20_01229 at 1286.879 kb on - strand, within MPMX20_01229 at 1286.879 kb on - strand, within MPMX20_01229 at 1286.906 kb on - strand, within MPMX20_01229 at 1286.910 kb on + strand, within MPMX20_01229 at 1287.000 kb on + strand, within MPMX20_01229 at 1287.033 kb on + strand, within MPMX20_01229 at 1287.065 kb on - strand, within MPMX20_01229 at 1287.097 kb on - strand, within MPMX20_01229 at 1287.154 kb on - strand, within MPMX20_01229 at 1287.166 kb on + strand, within MPMX20_01229 at 1287.169 kb on - strand, within MPMX20_01229 at 1287.169 kb on - strand, within MPMX20_01229 at 1287.179 kb on - strand, within MPMX20_01229 at 1287.188 kb on - strand, within MPMX20_01229 at 1287.319 kb on + strand, within MPMX20_01229 at 1287.411 kb on + strand at 1287.413 kb on + strand at 1287.436 kb on + strand at 1287.505 kb on - strand at 1287.510 kb on - strand at 1287.702 kb on + strand, within MPMX20_01230 at 1287.733 kb on - strand, within MPMX20_01230 at 1287.751 kb on + strand, within MPMX20_01230 at 1287.751 kb on + strand, within MPMX20_01230 at 1287.751 kb on + strand, within MPMX20_01230 at 1287.759 kb on - strand, within MPMX20_01230 at 1287.822 kb on - strand, within MPMX20_01230 at 1287.866 kb on + strand, within MPMX20_01230 at 1287.869 kb on + strand, within MPMX20_01230 at 1287.874 kb on - strand, within MPMX20_01230 at 1287.876 kb on + strand, within MPMX20_01230 at 1287.877 kb on - strand, within MPMX20_01230 at 1287.881 kb on + strand, within MPMX20_01230 at 1287.900 kb on + strand, within MPMX20_01230 at 1287.900 kb on + strand, within MPMX20_01230 at 1287.908 kb on - strand, within MPMX20_01230 at 1287.908 kb on - strand, within MPMX20_01230 at 1287.908 kb on - strand, within MPMX20_01230 at 1287.956 kb on + strand, within MPMX20_01230 at 1288.014 kb on + strand, within MPMX20_01230 at 1288.052 kb on + strand, within MPMX20_01230 at 1288.145 kb on - strand at 1288.385 kb on + strand at 1288.385 kb on + strand at 1288.385 kb on + strand at 1288.393 kb on - strand at 1288.407 kb on + strand at 1288.483 kb on - strand, within MPMX20_01231 at 1288.506 kb on + strand, within MPMX20_01231 at 1288.507 kb on + strand, within MPMX20_01231 at 1288.566 kb on + strand, within MPMX20_01231 at 1288.566 kb on + strand, within MPMX20_01231 at 1288.566 kb on + strand, within MPMX20_01231 at 1288.585 kb on - strand, within MPMX20_01231 at 1288.616 kb on - strand, within MPMX20_01231 at 1288.629 kb on + strand, within MPMX20_01231 at 1288.629 kb on + strand, within MPMX20_01231 at 1288.629 kb on + strand, within MPMX20_01231 at 1288.629 kb on - strand, within MPMX20_01231 at 1288.637 kb on - strand, within MPMX20_01231 at 1288.637 kb on - strand, within MPMX20_01231 at 1288.666 kb on + strand, within MPMX20_01231 at 1288.674 kb on - strand, within MPMX20_01231 at 1288.674 kb on - strand, within MPMX20_01231 at 1288.674 kb on - strand, within MPMX20_01231 at 1288.717 kb on + strand, within MPMX20_01231 at 1288.725 kb on - strand, within MPMX20_01231 at 1288.998 kb on + strand, within MPMX20_01231 at 1289.006 kb on - strand, within MPMX20_01231 at 1289.014 kb on + strand, within MPMX20_01231 at 1289.016 kb on - strand, within MPMX20_01231 at 1289.038 kb on + strand, within MPMX20_01231 at 1289.052 kb on + strand, within MPMX20_01231 at 1289.077 kb on + strand, within MPMX20_01231 at 1289.077 kb on + strand, within MPMX20_01231 at 1289.099 kb on - strand, within MPMX20_01231 at 1289.109 kb on + strand, within MPMX20_01231
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,286,539 - MPMX20_01229 0.33 +2.2 1,286,666 + MPMX20_01229 0.42 -2.7 1,286,871 + MPMX20_01229 0.56 -1.0 1,286,871 + MPMX20_01229 0.56 +0.2 1,286,879 - MPMX20_01229 0.56 -2.9 1,286,879 - MPMX20_01229 0.56 -0.0 1,286,906 - MPMX20_01229 0.58 -2.9 1,286,910 + MPMX20_01229 0.59 -0.8 1,287,000 + MPMX20_01229 0.65 -0.7 1,287,033 + MPMX20_01229 0.67 -3.2 1,287,065 - MPMX20_01229 0.69 +3.6 1,287,097 - MPMX20_01229 0.71 -1.0 1,287,154 - MPMX20_01229 0.75 -0.8 1,287,166 + MPMX20_01229 0.76 +1.3 1,287,169 - MPMX20_01229 0.76 +1.2 1,287,169 - MPMX20_01229 0.76 -1.3 1,287,179 - MPMX20_01229 0.77 +0.6 1,287,188 - MPMX20_01229 0.77 +0.2 1,287,319 + MPMX20_01229 0.86 +1.2 1,287,411 + -1.9 1,287,413 + -2.0 1,287,436 + -1.2 1,287,505 - -0.8 1,287,510 - -0.2 1,287,702 + MPMX20_01230 0.29 +4.6 1,287,733 - MPMX20_01230 0.34 -0.4 1,287,751 + MPMX20_01230 0.37 -1.8 1,287,751 + MPMX20_01230 0.37 -0.7 1,287,751 + MPMX20_01230 0.37 -2.8 1,287,759 - MPMX20_01230 0.38 +1.2 1,287,822 - MPMX20_01230 0.49 -1.4 1,287,866 + MPMX20_01230 0.56 -0.4 1,287,869 + MPMX20_01230 0.57 +0.7 1,287,874 - MPMX20_01230 0.58 +0.3 1,287,876 + MPMX20_01230 0.58 +3.2 1,287,877 - MPMX20_01230 0.58 -1.0 1,287,881 + MPMX20_01230 0.59 -2.5 1,287,900 + MPMX20_01230 0.62 -1.2 1,287,900 + MPMX20_01230 0.62 -0.8 1,287,908 - MPMX20_01230 0.64 +0.5 1,287,908 - MPMX20_01230 0.64 -0.4 1,287,908 - MPMX20_01230 0.64 +0.7 1,287,956 + MPMX20_01230 0.72 -1.3 1,288,014 + MPMX20_01230 0.82 -0.1 1,288,052 + MPMX20_01230 0.88 -2.3 1,288,145 - -3.1 1,288,385 + -1.7 1,288,385 + +0.6 1,288,385 + +1.2 1,288,393 - -2.0 1,288,407 + +1.2 1,288,483 - MPMX20_01231 0.11 -1.5 1,288,506 + MPMX20_01231 0.13 -1.8 1,288,507 + MPMX20_01231 0.13 -1.1 1,288,566 + MPMX20_01231 0.16 +0.6 1,288,566 + MPMX20_01231 0.16 +0.1 1,288,566 + MPMX20_01231 0.16 -0.7 1,288,585 - MPMX20_01231 0.16 -0.3 1,288,616 - MPMX20_01231 0.18 -0.3 1,288,629 + MPMX20_01231 0.19 -0.7 1,288,629 + MPMX20_01231 0.19 +1.2 1,288,629 + MPMX20_01231 0.19 +0.9 1,288,629 - MPMX20_01231 0.19 -1.5 1,288,637 - MPMX20_01231 0.19 +0.6 1,288,637 - MPMX20_01231 0.19 +1.2 1,288,666 + MPMX20_01231 0.20 +0.6 1,288,674 - MPMX20_01231 0.21 -0.8 1,288,674 - MPMX20_01231 0.21 -0.0 1,288,674 - MPMX20_01231 0.21 -0.4 1,288,717 + MPMX20_01231 0.23 -1.9 1,288,725 - MPMX20_01231 0.23 -1.2 1,288,998 + MPMX20_01231 0.37 +1.2 1,289,006 - MPMX20_01231 0.37 -0.6 1,289,014 + MPMX20_01231 0.38 +2.2 1,289,016 - MPMX20_01231 0.38 +0.0 1,289,038 + MPMX20_01231 0.39 +0.6 1,289,052 + MPMX20_01231 0.39 -0.2 1,289,077 + MPMX20_01231 0.41 -0.5 1,289,077 + MPMX20_01231 0.41 -0.8 1,289,099 - MPMX20_01231 0.42 +2.7 1,289,109 + MPMX20_01231 0.42 +0.2
Or see this region's nucleotide sequence