Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01230

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01229 and MPMX20_01230 are separated by 13 nucleotidesMPMX20_01230 and MPMX20_01231 are separated by 128 nucleotides MPMX20_01229: MPMX20_01229 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 1,286,048 to 1,287,520 _01229 MPMX20_01230: MPMX20_01230 - HTH-type transcriptional regulator BetI, at 1,287,534 to 1,288,121 _01230 MPMX20_01231: MPMX20_01231 - High-affinity choline transport protein, at 1,288,250 to 1,290,283 _01231 Position (kb) 1287 1288 1289Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1286.539 kb on - strand, within MPMX20_01229at 1286.666 kb on + strand, within MPMX20_01229at 1286.871 kb on + strand, within MPMX20_01229at 1286.871 kb on + strand, within MPMX20_01229at 1286.879 kb on - strand, within MPMX20_01229at 1286.879 kb on - strand, within MPMX20_01229at 1286.906 kb on - strand, within MPMX20_01229at 1286.910 kb on + strand, within MPMX20_01229at 1287.000 kb on + strand, within MPMX20_01229at 1287.033 kb on + strand, within MPMX20_01229at 1287.065 kb on - strand, within MPMX20_01229at 1287.097 kb on - strand, within MPMX20_01229at 1287.154 kb on - strand, within MPMX20_01229at 1287.166 kb on + strand, within MPMX20_01229at 1287.169 kb on - strand, within MPMX20_01229at 1287.169 kb on - strand, within MPMX20_01229at 1287.179 kb on - strand, within MPMX20_01229at 1287.188 kb on - strand, within MPMX20_01229at 1287.319 kb on + strand, within MPMX20_01229at 1287.411 kb on + strandat 1287.413 kb on + strandat 1287.436 kb on + strandat 1287.505 kb on - strandat 1287.510 kb on - strandat 1287.702 kb on + strand, within MPMX20_01230at 1287.733 kb on - strand, within MPMX20_01230at 1287.751 kb on + strand, within MPMX20_01230at 1287.751 kb on + strand, within MPMX20_01230at 1287.751 kb on + strand, within MPMX20_01230at 1287.759 kb on - strand, within MPMX20_01230at 1287.822 kb on - strand, within MPMX20_01230at 1287.866 kb on + strand, within MPMX20_01230at 1287.869 kb on + strand, within MPMX20_01230at 1287.874 kb on - strand, within MPMX20_01230at 1287.876 kb on + strand, within MPMX20_01230at 1287.877 kb on - strand, within MPMX20_01230at 1287.881 kb on + strand, within MPMX20_01230at 1287.900 kb on + strand, within MPMX20_01230at 1287.900 kb on + strand, within MPMX20_01230at 1287.908 kb on - strand, within MPMX20_01230at 1287.908 kb on - strand, within MPMX20_01230at 1287.908 kb on - strand, within MPMX20_01230at 1287.956 kb on + strand, within MPMX20_01230at 1288.014 kb on + strand, within MPMX20_01230at 1288.052 kb on + strand, within MPMX20_01230at 1288.145 kb on - strandat 1288.385 kb on + strandat 1288.385 kb on + strandat 1288.385 kb on + strandat 1288.393 kb on - strandat 1288.407 kb on + strandat 1288.483 kb on - strand, within MPMX20_01231at 1288.506 kb on + strand, within MPMX20_01231at 1288.507 kb on + strand, within MPMX20_01231at 1288.566 kb on + strand, within MPMX20_01231at 1288.566 kb on + strand, within MPMX20_01231at 1288.566 kb on + strand, within MPMX20_01231at 1288.585 kb on - strand, within MPMX20_01231at 1288.616 kb on - strand, within MPMX20_01231at 1288.629 kb on + strand, within MPMX20_01231at 1288.629 kb on + strand, within MPMX20_01231at 1288.629 kb on + strand, within MPMX20_01231at 1288.629 kb on - strand, within MPMX20_01231at 1288.637 kb on - strand, within MPMX20_01231at 1288.637 kb on - strand, within MPMX20_01231at 1288.666 kb on + strand, within MPMX20_01231at 1288.674 kb on - strand, within MPMX20_01231at 1288.674 kb on - strand, within MPMX20_01231at 1288.674 kb on - strand, within MPMX20_01231at 1288.717 kb on + strand, within MPMX20_01231at 1288.725 kb on - strand, within MPMX20_01231at 1288.998 kb on + strand, within MPMX20_01231at 1289.006 kb on - strand, within MPMX20_01231at 1289.014 kb on + strand, within MPMX20_01231at 1289.016 kb on - strand, within MPMX20_01231at 1289.038 kb on + strand, within MPMX20_01231at 1289.052 kb on + strand, within MPMX20_01231at 1289.077 kb on + strand, within MPMX20_01231at 1289.077 kb on + strand, within MPMX20_01231at 1289.099 kb on - strand, within MPMX20_01231at 1289.109 kb on + strand, within MPMX20_01231

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,286,539 - MPMX20_01229 0.33 +2.2
1,286,666 + MPMX20_01229 0.42 -2.7
1,286,871 + MPMX20_01229 0.56 -1.0
1,286,871 + MPMX20_01229 0.56 +0.2
1,286,879 - MPMX20_01229 0.56 -2.9
1,286,879 - MPMX20_01229 0.56 -0.0
1,286,906 - MPMX20_01229 0.58 -2.9
1,286,910 + MPMX20_01229 0.59 -0.8
1,287,000 + MPMX20_01229 0.65 -0.7
1,287,033 + MPMX20_01229 0.67 -3.2
1,287,065 - MPMX20_01229 0.69 +3.6
1,287,097 - MPMX20_01229 0.71 -1.0
1,287,154 - MPMX20_01229 0.75 -0.8
1,287,166 + MPMX20_01229 0.76 +1.3
1,287,169 - MPMX20_01229 0.76 +1.2
1,287,169 - MPMX20_01229 0.76 -1.3
1,287,179 - MPMX20_01229 0.77 +0.6
1,287,188 - MPMX20_01229 0.77 +0.2
1,287,319 + MPMX20_01229 0.86 +1.2
1,287,411 + -1.9
1,287,413 + -2.0
1,287,436 + -1.2
1,287,505 - -0.8
1,287,510 - -0.2
1,287,702 + MPMX20_01230 0.29 +4.6
1,287,733 - MPMX20_01230 0.34 -0.4
1,287,751 + MPMX20_01230 0.37 -1.8
1,287,751 + MPMX20_01230 0.37 -0.7
1,287,751 + MPMX20_01230 0.37 -2.8
1,287,759 - MPMX20_01230 0.38 +1.2
1,287,822 - MPMX20_01230 0.49 -1.4
1,287,866 + MPMX20_01230 0.56 -0.4
1,287,869 + MPMX20_01230 0.57 +0.7
1,287,874 - MPMX20_01230 0.58 +0.3
1,287,876 + MPMX20_01230 0.58 +3.2
1,287,877 - MPMX20_01230 0.58 -1.0
1,287,881 + MPMX20_01230 0.59 -2.5
1,287,900 + MPMX20_01230 0.62 -1.2
1,287,900 + MPMX20_01230 0.62 -0.8
1,287,908 - MPMX20_01230 0.64 +0.5
1,287,908 - MPMX20_01230 0.64 -0.4
1,287,908 - MPMX20_01230 0.64 +0.7
1,287,956 + MPMX20_01230 0.72 -1.3
1,288,014 + MPMX20_01230 0.82 -0.1
1,288,052 + MPMX20_01230 0.88 -2.3
1,288,145 - -3.1
1,288,385 + -1.7
1,288,385 + +0.6
1,288,385 + +1.2
1,288,393 - -2.0
1,288,407 + +1.2
1,288,483 - MPMX20_01231 0.11 -1.5
1,288,506 + MPMX20_01231 0.13 -1.8
1,288,507 + MPMX20_01231 0.13 -1.1
1,288,566 + MPMX20_01231 0.16 +0.6
1,288,566 + MPMX20_01231 0.16 +0.1
1,288,566 + MPMX20_01231 0.16 -0.7
1,288,585 - MPMX20_01231 0.16 -0.3
1,288,616 - MPMX20_01231 0.18 -0.3
1,288,629 + MPMX20_01231 0.19 -0.7
1,288,629 + MPMX20_01231 0.19 +1.2
1,288,629 + MPMX20_01231 0.19 +0.9
1,288,629 - MPMX20_01231 0.19 -1.5
1,288,637 - MPMX20_01231 0.19 +0.6
1,288,637 - MPMX20_01231 0.19 +1.2
1,288,666 + MPMX20_01231 0.20 +0.6
1,288,674 - MPMX20_01231 0.21 -0.8
1,288,674 - MPMX20_01231 0.21 -0.0
1,288,674 - MPMX20_01231 0.21 -0.4
1,288,717 + MPMX20_01231 0.23 -1.9
1,288,725 - MPMX20_01231 0.23 -1.2
1,288,998 + MPMX20_01231 0.37 +1.2
1,289,006 - MPMX20_01231 0.37 -0.6
1,289,014 + MPMX20_01231 0.38 +2.2
1,289,016 - MPMX20_01231 0.38 +0.0
1,289,038 + MPMX20_01231 0.39 +0.6
1,289,052 + MPMX20_01231 0.39 -0.2
1,289,077 + MPMX20_01231 0.41 -0.5
1,289,077 + MPMX20_01231 0.41 -0.8
1,289,099 - MPMX20_01231 0.42 +2.7
1,289,109 + MPMX20_01231 0.42 +0.2

Or see this region's nucleotide sequence