Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01024 and MPMX20_01025 are separated by 40 nucleotides MPMX20_01025 and MPMX20_01026 are separated by 307 nucleotides MPMX20_01026 and MPMX20_01027 are separated by 330 nucleotides
MPMX20_01024: MPMX20_01024 - Anhydromuropeptide permease, at 1,077,204 to 1,078,685
_01024
MPMX20_01025: MPMX20_01025 - hypothetical protein, at 1,078,726 to 1,079,304
_01025
MPMX20_01026: MPMX20_01026 - DNA-binding transcriptional regulator BolA, at 1,079,612 to 1,079,926
_01026
MPMX20_01027: MPMX20_01027 - Trigger factor, at 1,080,257 to 1,081,555
_01027
Position (kb)
1078
1079
1080 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1077.738 kb on - strand, within MPMX20_01024 at 1077.745 kb on - strand, within MPMX20_01024 at 1077.798 kb on + strand, within MPMX20_01024 at 1077.806 kb on - strand, within MPMX20_01024 at 1077.808 kb on + strand, within MPMX20_01024 at 1077.818 kb on + strand, within MPMX20_01024 at 1077.818 kb on + strand, within MPMX20_01024 at 1077.830 kb on + strand, within MPMX20_01024 at 1077.846 kb on + strand, within MPMX20_01024 at 1077.852 kb on + strand, within MPMX20_01024 at 1077.854 kb on - strand, within MPMX20_01024 at 1077.958 kb on - strand, within MPMX20_01024 at 1077.998 kb on + strand, within MPMX20_01024 at 1077.998 kb on + strand, within MPMX20_01024 at 1077.998 kb on + strand, within MPMX20_01024 at 1078.003 kb on + strand, within MPMX20_01024 at 1078.006 kb on - strand, within MPMX20_01024 at 1078.055 kb on + strand, within MPMX20_01024 at 1078.063 kb on - strand, within MPMX20_01024 at 1078.063 kb on - strand, within MPMX20_01024 at 1078.063 kb on - strand, within MPMX20_01024 at 1078.084 kb on - strand, within MPMX20_01024 at 1078.091 kb on + strand, within MPMX20_01024 at 1078.091 kb on + strand, within MPMX20_01024 at 1078.091 kb on + strand, within MPMX20_01024 at 1078.091 kb on + strand, within MPMX20_01024 at 1078.091 kb on + strand, within MPMX20_01024 at 1078.099 kb on - strand, within MPMX20_01024 at 1078.099 kb on - strand, within MPMX20_01024 at 1078.099 kb on - strand, within MPMX20_01024 at 1078.149 kb on + strand, within MPMX20_01024 at 1078.157 kb on - strand, within MPMX20_01024 at 1078.157 kb on - strand, within MPMX20_01024 at 1078.188 kb on - strand, within MPMX20_01024 at 1078.188 kb on - strand, within MPMX20_01024 at 1078.188 kb on - strand, within MPMX20_01024 at 1078.199 kb on - strand, within MPMX20_01024 at 1078.215 kb on + strand, within MPMX20_01024 at 1078.270 kb on - strand, within MPMX20_01024 at 1078.345 kb on - strand, within MPMX20_01024 at 1078.420 kb on - strand, within MPMX20_01024 at 1078.424 kb on + strand, within MPMX20_01024 at 1078.424 kb on + strand, within MPMX20_01024 at 1078.444 kb on + strand, within MPMX20_01024 at 1078.460 kb on + strand, within MPMX20_01024 at 1078.462 kb on + strand, within MPMX20_01024 at 1078.470 kb on - strand, within MPMX20_01024 at 1078.470 kb on - strand, within MPMX20_01024 at 1078.485 kb on + strand, within MPMX20_01024 at 1078.501 kb on + strand, within MPMX20_01024 at 1078.564 kb on + strand at 1078.571 kb on - strand at 1078.582 kb on + strand at 1078.684 kb on + strand at 1078.684 kb on + strand at 1078.689 kb on + strand at 1078.708 kb on - strand at 1078.765 kb on + strand at 1078.768 kb on - strand at 1078.789 kb on - strand, within MPMX20_01025 at 1078.836 kb on + strand, within MPMX20_01025 at 1078.851 kb on + strand, within MPMX20_01025 at 1078.851 kb on + strand, within MPMX20_01025 at 1078.854 kb on - strand, within MPMX20_01025 at 1078.856 kb on + strand, within MPMX20_01025 at 1078.859 kb on - strand, within MPMX20_01025 at 1078.912 kb on - strand, within MPMX20_01025 at 1078.949 kb on + strand, within MPMX20_01025 at 1079.070 kb on + strand, within MPMX20_01025 at 1079.119 kb on + strand, within MPMX20_01025 at 1079.141 kb on + strand, within MPMX20_01025 at 1079.167 kb on - strand, within MPMX20_01025 at 1079.180 kb on - strand, within MPMX20_01025 at 1079.195 kb on - strand, within MPMX20_01025 at 1079.216 kb on - strand, within MPMX20_01025 at 1079.216 kb on - strand, within MPMX20_01025 at 1079.226 kb on + strand, within MPMX20_01025 at 1079.244 kb on + strand, within MPMX20_01025 at 1079.244 kb on + strand, within MPMX20_01025 at 1079.244 kb on + strand, within MPMX20_01025 at 1079.249 kb on + strand at 1079.378 kb on - strand at 1079.386 kb on - strand at 1079.391 kb on - strand at 1079.424 kb on - strand at 1079.452 kb on + strand at 1079.452 kb on + strand at 1079.452 kb on + strand at 1079.460 kb on + strand at 1079.460 kb on + strand at 1079.460 kb on - strand at 1079.460 kb on - strand at 1079.461 kb on - strand at 1079.461 kb on - strand at 1079.468 kb on - strand at 1079.468 kb on - strand at 1079.468 kb on - strand at 1079.468 kb on - strand at 1079.473 kb on + strand at 1079.496 kb on - strand at 1079.553 kb on - strand at 1079.583 kb on - strand at 1079.589 kb on - strand at 1079.591 kb on + strand at 1079.616 kb on + strand at 1079.638 kb on + strand at 1079.648 kb on + strand, within MPMX20_01026 at 1079.648 kb on + strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.658 kb on - strand, within MPMX20_01026 at 1079.658 kb on - strand, within MPMX20_01026 at 1079.658 kb on - strand, within MPMX20_01026 at 1079.663 kb on - strand, within MPMX20_01026 at 1079.749 kb on + strand, within MPMX20_01026 at 1079.757 kb on - strand, within MPMX20_01026 at 1079.757 kb on - strand, within MPMX20_01026 at 1079.757 kb on - strand, within MPMX20_01026 at 1079.812 kb on + strand, within MPMX20_01026 at 1079.812 kb on + strand, within MPMX20_01026 at 1079.812 kb on + strand, within MPMX20_01026 at 1079.844 kb on + strand, within MPMX20_01026 at 1079.851 kb on - strand, within MPMX20_01026 at 1080.094 kb on + strand at 1080.120 kb on + strand at 1080.191 kb on + strand at 1080.200 kb on + strand at 1080.213 kb on + strand at 1080.213 kb on + strand at 1080.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,077,738 - MPMX20_01024 0.36 -3.3 1,077,745 - MPMX20_01024 0.37 -2.6 1,077,798 + MPMX20_01024 0.40 -0.3 1,077,806 - MPMX20_01024 0.41 -2.5 1,077,808 + MPMX20_01024 0.41 -0.9 1,077,818 + MPMX20_01024 0.41 -0.5 1,077,818 + MPMX20_01024 0.41 -3.3 1,077,830 + MPMX20_01024 0.42 -3.1 1,077,846 + MPMX20_01024 0.43 -1.1 1,077,852 + MPMX20_01024 0.44 -0.5 1,077,854 - MPMX20_01024 0.44 -2.4 1,077,958 - MPMX20_01024 0.51 -2.8 1,077,998 + MPMX20_01024 0.54 -2.0 1,077,998 + MPMX20_01024 0.54 +0.0 1,077,998 + MPMX20_01024 0.54 +0.5 1,078,003 + MPMX20_01024 0.54 -3.6 1,078,006 - MPMX20_01024 0.54 -0.3 1,078,055 + MPMX20_01024 0.57 -2.8 1,078,063 - MPMX20_01024 0.58 +0.5 1,078,063 - MPMX20_01024 0.58 -0.3 1,078,063 - MPMX20_01024 0.58 +0.8 1,078,084 - MPMX20_01024 0.59 -1.1 1,078,091 + MPMX20_01024 0.60 -0.3 1,078,091 + MPMX20_01024 0.60 -2.7 1,078,091 + MPMX20_01024 0.60 -3.4 1,078,091 + MPMX20_01024 0.60 -1.9 1,078,091 + MPMX20_01024 0.60 -0.5 1,078,099 - MPMX20_01024 0.60 -0.3 1,078,099 - MPMX20_01024 0.60 -1.7 1,078,099 - MPMX20_01024 0.60 -2.8 1,078,149 + MPMX20_01024 0.64 -1.3 1,078,157 - MPMX20_01024 0.64 -2.5 1,078,157 - MPMX20_01024 0.64 -3.5 1,078,188 - MPMX20_01024 0.66 -3.1 1,078,188 - MPMX20_01024 0.66 -2.1 1,078,188 - MPMX20_01024 0.66 -1.1 1,078,199 - MPMX20_01024 0.67 -2.1 1,078,215 + MPMX20_01024 0.68 +0.0 1,078,270 - MPMX20_01024 0.72 -0.3 1,078,345 - MPMX20_01024 0.77 -0.8 1,078,420 - MPMX20_01024 0.82 -2.0 1,078,424 + MPMX20_01024 0.82 -3.0 1,078,424 + MPMX20_01024 0.82 -0.5 1,078,444 + MPMX20_01024 0.84 -0.5 1,078,460 + MPMX20_01024 0.85 -4.2 1,078,462 + MPMX20_01024 0.85 +2.0 1,078,470 - MPMX20_01024 0.85 -1.1 1,078,470 - MPMX20_01024 0.85 -3.6 1,078,485 + MPMX20_01024 0.86 -1.8 1,078,501 + MPMX20_01024 0.88 -3.2 1,078,564 + -0.2 1,078,571 - -1.5 1,078,582 + -3.9 1,078,684 + +1.0 1,078,684 + -1.3 1,078,689 + +1.5 1,078,708 - -2.0 1,078,765 + -3.3 1,078,768 - -2.3 1,078,789 - MPMX20_01025 0.11 -2.8 1,078,836 + MPMX20_01025 0.19 +0.0 1,078,851 + MPMX20_01025 0.22 -1.4 1,078,851 + MPMX20_01025 0.22 -1.9 1,078,854 - MPMX20_01025 0.22 +0.5 1,078,856 + MPMX20_01025 0.22 -2.1 1,078,859 - MPMX20_01025 0.23 -2.0 1,078,912 - MPMX20_01025 0.32 -0.8 1,078,949 + MPMX20_01025 0.39 +0.3 1,079,070 + MPMX20_01025 0.59 -2.4 1,079,119 + MPMX20_01025 0.68 -2.7 1,079,141 + MPMX20_01025 0.72 +1.0 1,079,167 - MPMX20_01025 0.76 -1.7 1,079,180 - MPMX20_01025 0.78 -3.7 1,079,195 - MPMX20_01025 0.81 -0.1 1,079,216 - MPMX20_01025 0.85 -2.9 1,079,216 - MPMX20_01025 0.85 -1.3 1,079,226 + MPMX20_01025 0.86 -3.0 1,079,244 + MPMX20_01025 0.89 +0.0 1,079,244 + MPMX20_01025 0.89 -1.9 1,079,244 + MPMX20_01025 0.89 -3.9 1,079,249 + -1.8 1,079,378 - -0.5 1,079,386 - +0.3 1,079,391 - +0.4 1,079,424 - +1.6 1,079,452 + +0.0 1,079,452 + -3.5 1,079,452 + -0.2 1,079,460 + -1.3 1,079,460 + -1.7 1,079,460 - -0.3 1,079,460 - +0.5 1,079,461 - -3.2 1,079,461 - -1.4 1,079,468 - +0.6 1,079,468 - -3.5 1,079,468 - +1.0 1,079,468 - +3.0 1,079,473 + -2.0 1,079,496 - +3.6 1,079,553 - -0.4 1,079,583 - -3.8 1,079,589 - -0.1 1,079,591 + -1.0 1,079,616 + -1.0 1,079,638 + -2.7 1,079,648 + MPMX20_01026 0.11 +0.1 1,079,648 + MPMX20_01026 0.11 -2.2 1,079,656 - MPMX20_01026 0.14 -0.8 1,079,656 - MPMX20_01026 0.14 -0.3 1,079,656 - MPMX20_01026 0.14 +0.5 1,079,656 - MPMX20_01026 0.14 -1.5 1,079,658 - MPMX20_01026 0.15 +0.1 1,079,658 - MPMX20_01026 0.15 -1.0 1,079,658 - MPMX20_01026 0.15 -2.5 1,079,663 - MPMX20_01026 0.16 +0.9 1,079,749 + MPMX20_01026 0.43 -1.8 1,079,757 - MPMX20_01026 0.46 -2.3 1,079,757 - MPMX20_01026 0.46 -1.0 1,079,757 - MPMX20_01026 0.46 -2.3 1,079,812 + MPMX20_01026 0.63 -1.0 1,079,812 + MPMX20_01026 0.63 +1.0 1,079,812 + MPMX20_01026 0.63 -0.4 1,079,844 + MPMX20_01026 0.74 +0.8 1,079,851 - MPMX20_01026 0.76 +2.5 1,080,094 + -1.3 1,080,120 + +0.3 1,080,191 + -1.8 1,080,200 + +1.4 1,080,213 + +1.0 1,080,213 + +0.5 1,080,285 + -2.5
Or see this region's nucleotide sequence