Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01025

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01024 and MPMX20_01025 are separated by 40 nucleotidesMPMX20_01025 and MPMX20_01026 are separated by 307 nucleotidesMPMX20_01026 and MPMX20_01027 are separated by 330 nucleotides MPMX20_01024: MPMX20_01024 - Anhydromuropeptide permease, at 1,077,204 to 1,078,685 _01024 MPMX20_01025: MPMX20_01025 - hypothetical protein, at 1,078,726 to 1,079,304 _01025 MPMX20_01026: MPMX20_01026 - DNA-binding transcriptional regulator BolA, at 1,079,612 to 1,079,926 _01026 MPMX20_01027: MPMX20_01027 - Trigger factor, at 1,080,257 to 1,081,555 _01027 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1077.738 kb on - strand, within MPMX20_01024at 1077.745 kb on - strand, within MPMX20_01024at 1077.798 kb on + strand, within MPMX20_01024at 1077.806 kb on - strand, within MPMX20_01024at 1077.808 kb on + strand, within MPMX20_01024at 1077.818 kb on + strand, within MPMX20_01024at 1077.818 kb on + strand, within MPMX20_01024at 1077.830 kb on + strand, within MPMX20_01024at 1077.846 kb on + strand, within MPMX20_01024at 1077.852 kb on + strand, within MPMX20_01024at 1077.854 kb on - strand, within MPMX20_01024at 1077.958 kb on - strand, within MPMX20_01024at 1077.998 kb on + strand, within MPMX20_01024at 1077.998 kb on + strand, within MPMX20_01024at 1077.998 kb on + strand, within MPMX20_01024at 1078.003 kb on + strand, within MPMX20_01024at 1078.006 kb on - strand, within MPMX20_01024at 1078.055 kb on + strand, within MPMX20_01024at 1078.063 kb on - strand, within MPMX20_01024at 1078.063 kb on - strand, within MPMX20_01024at 1078.063 kb on - strand, within MPMX20_01024at 1078.084 kb on - strand, within MPMX20_01024at 1078.091 kb on + strand, within MPMX20_01024at 1078.091 kb on + strand, within MPMX20_01024at 1078.091 kb on + strand, within MPMX20_01024at 1078.091 kb on + strand, within MPMX20_01024at 1078.091 kb on + strand, within MPMX20_01024at 1078.099 kb on - strand, within MPMX20_01024at 1078.099 kb on - strand, within MPMX20_01024at 1078.099 kb on - strand, within MPMX20_01024at 1078.149 kb on + strand, within MPMX20_01024at 1078.157 kb on - strand, within MPMX20_01024at 1078.157 kb on - strand, within MPMX20_01024at 1078.188 kb on - strand, within MPMX20_01024at 1078.188 kb on - strand, within MPMX20_01024at 1078.188 kb on - strand, within MPMX20_01024at 1078.199 kb on - strand, within MPMX20_01024at 1078.215 kb on + strand, within MPMX20_01024at 1078.270 kb on - strand, within MPMX20_01024at 1078.345 kb on - strand, within MPMX20_01024at 1078.420 kb on - strand, within MPMX20_01024at 1078.424 kb on + strand, within MPMX20_01024at 1078.424 kb on + strand, within MPMX20_01024at 1078.444 kb on + strand, within MPMX20_01024at 1078.460 kb on + strand, within MPMX20_01024at 1078.462 kb on + strand, within MPMX20_01024at 1078.470 kb on - strand, within MPMX20_01024at 1078.470 kb on - strand, within MPMX20_01024at 1078.485 kb on + strand, within MPMX20_01024at 1078.501 kb on + strand, within MPMX20_01024at 1078.564 kb on + strandat 1078.571 kb on - strandat 1078.582 kb on + strandat 1078.684 kb on + strandat 1078.684 kb on + strandat 1078.689 kb on + strandat 1078.708 kb on - strandat 1078.765 kb on + strandat 1078.768 kb on - strandat 1078.789 kb on - strand, within MPMX20_01025at 1078.836 kb on + strand, within MPMX20_01025at 1078.851 kb on + strand, within MPMX20_01025at 1078.851 kb on + strand, within MPMX20_01025at 1078.854 kb on - strand, within MPMX20_01025at 1078.856 kb on + strand, within MPMX20_01025at 1078.859 kb on - strand, within MPMX20_01025at 1078.912 kb on - strand, within MPMX20_01025at 1078.949 kb on + strand, within MPMX20_01025at 1079.070 kb on + strand, within MPMX20_01025at 1079.119 kb on + strand, within MPMX20_01025at 1079.141 kb on + strand, within MPMX20_01025at 1079.167 kb on - strand, within MPMX20_01025at 1079.180 kb on - strand, within MPMX20_01025at 1079.195 kb on - strand, within MPMX20_01025at 1079.216 kb on - strand, within MPMX20_01025at 1079.216 kb on - strand, within MPMX20_01025at 1079.226 kb on + strand, within MPMX20_01025at 1079.244 kb on + strand, within MPMX20_01025at 1079.244 kb on + strand, within MPMX20_01025at 1079.244 kb on + strand, within MPMX20_01025at 1079.249 kb on + strandat 1079.378 kb on - strandat 1079.386 kb on - strandat 1079.391 kb on - strandat 1079.424 kb on - strandat 1079.452 kb on + strandat 1079.452 kb on + strandat 1079.452 kb on + strandat 1079.460 kb on + strandat 1079.460 kb on + strandat 1079.460 kb on - strandat 1079.460 kb on - strandat 1079.461 kb on - strandat 1079.461 kb on - strandat 1079.468 kb on - strandat 1079.468 kb on - strandat 1079.468 kb on - strandat 1079.468 kb on - strandat 1079.473 kb on + strandat 1079.496 kb on - strandat 1079.553 kb on - strandat 1079.583 kb on - strandat 1079.589 kb on - strandat 1079.591 kb on + strandat 1079.616 kb on + strandat 1079.638 kb on + strandat 1079.648 kb on + strand, within MPMX20_01026at 1079.648 kb on + strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.658 kb on - strand, within MPMX20_01026at 1079.658 kb on - strand, within MPMX20_01026at 1079.658 kb on - strand, within MPMX20_01026at 1079.663 kb on - strand, within MPMX20_01026at 1079.749 kb on + strand, within MPMX20_01026at 1079.757 kb on - strand, within MPMX20_01026at 1079.757 kb on - strand, within MPMX20_01026at 1079.757 kb on - strand, within MPMX20_01026at 1079.812 kb on + strand, within MPMX20_01026at 1079.812 kb on + strand, within MPMX20_01026at 1079.812 kb on + strand, within MPMX20_01026at 1079.844 kb on + strand, within MPMX20_01026at 1079.851 kb on - strand, within MPMX20_01026at 1080.094 kb on + strandat 1080.120 kb on + strandat 1080.191 kb on + strandat 1080.200 kb on + strandat 1080.213 kb on + strandat 1080.213 kb on + strandat 1080.285 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,077,738 - MPMX20_01024 0.36 -3.3
1,077,745 - MPMX20_01024 0.37 -2.6
1,077,798 + MPMX20_01024 0.40 -0.3
1,077,806 - MPMX20_01024 0.41 -2.5
1,077,808 + MPMX20_01024 0.41 -0.9
1,077,818 + MPMX20_01024 0.41 -0.5
1,077,818 + MPMX20_01024 0.41 -3.3
1,077,830 + MPMX20_01024 0.42 -3.1
1,077,846 + MPMX20_01024 0.43 -1.1
1,077,852 + MPMX20_01024 0.44 -0.5
1,077,854 - MPMX20_01024 0.44 -2.4
1,077,958 - MPMX20_01024 0.51 -2.8
1,077,998 + MPMX20_01024 0.54 -2.0
1,077,998 + MPMX20_01024 0.54 +0.0
1,077,998 + MPMX20_01024 0.54 +0.5
1,078,003 + MPMX20_01024 0.54 -3.6
1,078,006 - MPMX20_01024 0.54 -0.3
1,078,055 + MPMX20_01024 0.57 -2.8
1,078,063 - MPMX20_01024 0.58 +0.5
1,078,063 - MPMX20_01024 0.58 -0.3
1,078,063 - MPMX20_01024 0.58 +0.8
1,078,084 - MPMX20_01024 0.59 -1.1
1,078,091 + MPMX20_01024 0.60 -0.3
1,078,091 + MPMX20_01024 0.60 -2.7
1,078,091 + MPMX20_01024 0.60 -3.4
1,078,091 + MPMX20_01024 0.60 -1.9
1,078,091 + MPMX20_01024 0.60 -0.5
1,078,099 - MPMX20_01024 0.60 -0.3
1,078,099 - MPMX20_01024 0.60 -1.7
1,078,099 - MPMX20_01024 0.60 -2.8
1,078,149 + MPMX20_01024 0.64 -1.3
1,078,157 - MPMX20_01024 0.64 -2.5
1,078,157 - MPMX20_01024 0.64 -3.5
1,078,188 - MPMX20_01024 0.66 -3.1
1,078,188 - MPMX20_01024 0.66 -2.1
1,078,188 - MPMX20_01024 0.66 -1.1
1,078,199 - MPMX20_01024 0.67 -2.1
1,078,215 + MPMX20_01024 0.68 +0.0
1,078,270 - MPMX20_01024 0.72 -0.3
1,078,345 - MPMX20_01024 0.77 -0.8
1,078,420 - MPMX20_01024 0.82 -2.0
1,078,424 + MPMX20_01024 0.82 -3.0
1,078,424 + MPMX20_01024 0.82 -0.5
1,078,444 + MPMX20_01024 0.84 -0.5
1,078,460 + MPMX20_01024 0.85 -4.2
1,078,462 + MPMX20_01024 0.85 +2.0
1,078,470 - MPMX20_01024 0.85 -1.1
1,078,470 - MPMX20_01024 0.85 -3.6
1,078,485 + MPMX20_01024 0.86 -1.8
1,078,501 + MPMX20_01024 0.88 -3.2
1,078,564 + -0.2
1,078,571 - -1.5
1,078,582 + -3.9
1,078,684 + +1.0
1,078,684 + -1.3
1,078,689 + +1.5
1,078,708 - -2.0
1,078,765 + -3.3
1,078,768 - -2.3
1,078,789 - MPMX20_01025 0.11 -2.8
1,078,836 + MPMX20_01025 0.19 +0.0
1,078,851 + MPMX20_01025 0.22 -1.4
1,078,851 + MPMX20_01025 0.22 -1.9
1,078,854 - MPMX20_01025 0.22 +0.5
1,078,856 + MPMX20_01025 0.22 -2.1
1,078,859 - MPMX20_01025 0.23 -2.0
1,078,912 - MPMX20_01025 0.32 -0.8
1,078,949 + MPMX20_01025 0.39 +0.3
1,079,070 + MPMX20_01025 0.59 -2.4
1,079,119 + MPMX20_01025 0.68 -2.7
1,079,141 + MPMX20_01025 0.72 +1.0
1,079,167 - MPMX20_01025 0.76 -1.7
1,079,180 - MPMX20_01025 0.78 -3.7
1,079,195 - MPMX20_01025 0.81 -0.1
1,079,216 - MPMX20_01025 0.85 -2.9
1,079,216 - MPMX20_01025 0.85 -1.3
1,079,226 + MPMX20_01025 0.86 -3.0
1,079,244 + MPMX20_01025 0.89 +0.0
1,079,244 + MPMX20_01025 0.89 -1.9
1,079,244 + MPMX20_01025 0.89 -3.9
1,079,249 + -1.8
1,079,378 - -0.5
1,079,386 - +0.3
1,079,391 - +0.4
1,079,424 - +1.6
1,079,452 + +0.0
1,079,452 + -3.5
1,079,452 + -0.2
1,079,460 + -1.3
1,079,460 + -1.7
1,079,460 - -0.3
1,079,460 - +0.5
1,079,461 - -3.2
1,079,461 - -1.4
1,079,468 - +0.6
1,079,468 - -3.5
1,079,468 - +1.0
1,079,468 - +3.0
1,079,473 + -2.0
1,079,496 - +3.6
1,079,553 - -0.4
1,079,583 - -3.8
1,079,589 - -0.1
1,079,591 + -1.0
1,079,616 + -1.0
1,079,638 + -2.7
1,079,648 + MPMX20_01026 0.11 +0.1
1,079,648 + MPMX20_01026 0.11 -2.2
1,079,656 - MPMX20_01026 0.14 -0.8
1,079,656 - MPMX20_01026 0.14 -0.3
1,079,656 - MPMX20_01026 0.14 +0.5
1,079,656 - MPMX20_01026 0.14 -1.5
1,079,658 - MPMX20_01026 0.15 +0.1
1,079,658 - MPMX20_01026 0.15 -1.0
1,079,658 - MPMX20_01026 0.15 -2.5
1,079,663 - MPMX20_01026 0.16 +0.9
1,079,749 + MPMX20_01026 0.43 -1.8
1,079,757 - MPMX20_01026 0.46 -2.3
1,079,757 - MPMX20_01026 0.46 -1.0
1,079,757 - MPMX20_01026 0.46 -2.3
1,079,812 + MPMX20_01026 0.63 -1.0
1,079,812 + MPMX20_01026 0.63 +1.0
1,079,812 + MPMX20_01026 0.63 -0.4
1,079,844 + MPMX20_01026 0.74 +0.8
1,079,851 - MPMX20_01026 0.76 +2.5
1,080,094 + -1.3
1,080,120 + +0.3
1,080,191 + -1.8
1,080,200 + +1.4
1,080,213 + +1.0
1,080,213 + +0.5
1,080,285 + -2.5

Or see this region's nucleotide sequence