Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03395 and MPMX20_03396 are separated by 169 nucleotides MPMX20_03396 and MPMX20_03397 are separated by 156 nucleotides MPMX20_03397 and MPMX20_03398 are separated by 1 nucleotides
MPMX20_03395: MPMX20_03395 - Dual-specificity RNA methyltransferase RlmN, at 3,576,082 to 3,577,248
_03395
MPMX20_03396: MPMX20_03396 - Nucleoside diphosphate kinase, at 3,577,418 to 3,577,849
_03396
MPMX20_03397: MPMX20_03397 - Penicillin-binding protein 1C, at 3,578,006 to 3,580,330
_03397
MPMX20_03398: MPMX20_03398 - Alpha-2-macroglobulin, at 3,580,332 to 3,585,284
_03398
Position (kb)
3578
3579
3580
3581 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 3577.019 kb on + strand, within MPMX20_03395 at 3577.033 kb on + strand, within MPMX20_03395 at 3577.062 kb on + strand, within MPMX20_03395 at 3577.102 kb on + strand, within MPMX20_03395 at 3577.115 kb on - strand, within MPMX20_03395 at 3577.165 kb on + strand at 3577.165 kb on + strand at 3577.169 kb on + strand at 3577.221 kb on + strand at 3577.229 kb on - strand at 3577.276 kb on - strand at 3577.282 kb on - strand at 3577.282 kb on - strand at 3577.282 kb on - strand at 3577.282 kb on - strand at 3577.323 kb on - strand at 3577.341 kb on - strand at 3577.343 kb on + strand at 3577.370 kb on - strand at 3577.372 kb on - strand at 3577.411 kb on - strand at 3577.489 kb on + strand, within MPMX20_03396 at 3577.543 kb on + strand, within MPMX20_03396 at 3577.543 kb on + strand, within MPMX20_03396 at 3577.543 kb on + strand, within MPMX20_03396 at 3577.545 kb on + strand, within MPMX20_03396 at 3577.545 kb on + strand, within MPMX20_03396 at 3577.545 kb on + strand, within MPMX20_03396 at 3577.551 kb on - strand, within MPMX20_03396 at 3577.553 kb on - strand, within MPMX20_03396 at 3577.553 kb on - strand, within MPMX20_03396 at 3577.603 kb on - strand, within MPMX20_03396 at 3577.647 kb on - strand, within MPMX20_03396 at 3577.647 kb on - strand, within MPMX20_03396 at 3577.653 kb on + strand, within MPMX20_03396 at 3577.727 kb on + strand, within MPMX20_03396 at 3577.858 kb on + strand at 3577.866 kb on - strand at 3577.895 kb on - strand at 3577.980 kb on + strand at 3577.980 kb on + strand at 3577.988 kb on - strand at 3578.032 kb on + strand at 3578.094 kb on + strand at 3578.153 kb on + strand at 3578.248 kb on + strand, within MPMX20_03397 at 3578.248 kb on + strand, within MPMX20_03397 at 3578.261 kb on - strand, within MPMX20_03397 at 3578.278 kb on - strand, within MPMX20_03397 at 3578.299 kb on + strand, within MPMX20_03397 at 3578.365 kb on - strand, within MPMX20_03397 at 3578.385 kb on - strand, within MPMX20_03397 at 3578.638 kb on + strand, within MPMX20_03397 at 3578.684 kb on + strand, within MPMX20_03397 at 3578.690 kb on - strand, within MPMX20_03397 at 3578.749 kb on + strand, within MPMX20_03397 at 3578.755 kb on + strand, within MPMX20_03397 at 3578.811 kb on + strand, within MPMX20_03397 at 3578.816 kb on + strand, within MPMX20_03397 at 3578.853 kb on + strand, within MPMX20_03397 at 3578.863 kb on + strand, within MPMX20_03397 at 3578.957 kb on - strand, within MPMX20_03397 at 3579.012 kb on - strand, within MPMX20_03397 at 3579.012 kb on - strand, within MPMX20_03397 at 3579.012 kb on - strand, within MPMX20_03397 at 3579.051 kb on + strand, within MPMX20_03397 at 3579.077 kb on + strand, within MPMX20_03397 at 3579.119 kb on - strand, within MPMX20_03397 at 3579.136 kb on + strand, within MPMX20_03397 at 3579.375 kb on + strand, within MPMX20_03397 at 3579.499 kb on + strand, within MPMX20_03397 at 3579.507 kb on - strand, within MPMX20_03397 at 3579.587 kb on - strand, within MPMX20_03397 at 3579.616 kb on + strand, within MPMX20_03397 at 3579.616 kb on + strand, within MPMX20_03397 at 3579.624 kb on - strand, within MPMX20_03397 at 3579.624 kb on - strand, within MPMX20_03397 at 3579.654 kb on - strand, within MPMX20_03397 at 3579.659 kb on + strand, within MPMX20_03397 at 3579.828 kb on + strand, within MPMX20_03397 at 3579.856 kb on - strand, within MPMX20_03397 at 3579.863 kb on - strand, within MPMX20_03397 at 3579.865 kb on - strand, within MPMX20_03397 at 3579.893 kb on - strand, within MPMX20_03397 at 3579.964 kb on + strand, within MPMX20_03397 at 3579.984 kb on - strand, within MPMX20_03397 at 3580.028 kb on + strand, within MPMX20_03397 at 3580.028 kb on + strand, within MPMX20_03397 at 3580.028 kb on + strand, within MPMX20_03397 at 3580.059 kb on - strand, within MPMX20_03397 at 3580.167 kb on + strand at 3580.217 kb on - strand at 3580.259 kb on - strand at 3580.297 kb on + strand at 3580.367 kb on - strand at 3580.426 kb on - strand at 3580.441 kb on - strand at 3580.450 kb on + strand at 3580.458 kb on - strand at 3580.458 kb on - strand at 3580.458 kb on - strand at 3580.531 kb on + strand at 3580.560 kb on + strand at 3580.563 kb on - strand at 3580.589 kb on - strand at 3580.644 kb on - strand at 3580.661 kb on + strand at 3580.744 kb on - strand at 3580.784 kb on + strand at 3580.792 kb on - strand at 3580.904 kb on + strand, within MPMX20_03398 at 3580.993 kb on + strand, within MPMX20_03398 at 3580.993 kb on + strand, within MPMX20_03398 at 3580.993 kb on + strand, within MPMX20_03398 at 3581.026 kb on + strand, within MPMX20_03398 at 3581.036 kb on + strand, within MPMX20_03398 at 3581.092 kb on + strand, within MPMX20_03398 at 3581.092 kb on + strand, within MPMX20_03398 at 3581.092 kb on + strand, within MPMX20_03398 at 3581.100 kb on - strand, within MPMX20_03398 at 3581.100 kb on - strand, within MPMX20_03398 at 3581.248 kb on + strand, within MPMX20_03398 at 3581.248 kb on + strand, within MPMX20_03398
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,577,019 + MPMX20_03395 0.80 -0.5 3,577,033 + MPMX20_03395 0.81 +0.5 3,577,062 + MPMX20_03395 0.84 -0.5 3,577,102 + MPMX20_03395 0.87 +3.5 3,577,115 - MPMX20_03395 0.89 -0.4 3,577,165 + +0.4 3,577,165 + -1.1 3,577,169 + +0.0 3,577,221 + -0.3 3,577,229 - +0.8 3,577,276 - +1.0 3,577,282 - -1.1 3,577,282 - +0.9 3,577,282 - -0.8 3,577,282 - +0.9 3,577,323 - -0.2 3,577,341 - +0.3 3,577,343 + -2.1 3,577,370 - -1.1 3,577,372 - +0.4 3,577,411 - -0.9 3,577,489 + MPMX20_03396 0.16 -4.1 3,577,543 + MPMX20_03396 0.29 -0.9 3,577,543 + MPMX20_03396 0.29 -2.2 3,577,543 + MPMX20_03396 0.29 -2.0 3,577,545 + MPMX20_03396 0.29 -0.9 3,577,545 + MPMX20_03396 0.29 -2.3 3,577,545 + MPMX20_03396 0.29 -2.9 3,577,551 - MPMX20_03396 0.31 -2.0 3,577,553 - MPMX20_03396 0.31 -2.8 3,577,553 - MPMX20_03396 0.31 +1.5 3,577,603 - MPMX20_03396 0.43 -4.1 3,577,647 - MPMX20_03396 0.53 -3.0 3,577,647 - MPMX20_03396 0.53 -2.6 3,577,653 + MPMX20_03396 0.54 -2.0 3,577,727 + MPMX20_03396 0.72 -1.3 3,577,858 + -0.8 3,577,866 - -0.0 3,577,895 - +0.8 3,577,980 + -0.4 3,577,980 + +0.1 3,577,988 - -2.4 3,578,032 + -1.6 3,578,094 + +0.2 3,578,153 + -0.5 3,578,248 + MPMX20_03397 0.10 -1.9 3,578,248 + MPMX20_03397 0.10 -0.4 3,578,261 - MPMX20_03397 0.11 -1.3 3,578,278 - MPMX20_03397 0.12 -1.7 3,578,299 + MPMX20_03397 0.13 -0.7 3,578,365 - MPMX20_03397 0.15 +1.2 3,578,385 - MPMX20_03397 0.16 +1.0 3,578,638 + MPMX20_03397 0.27 -2.1 3,578,684 + MPMX20_03397 0.29 -1.4 3,578,690 - MPMX20_03397 0.29 +0.2 3,578,749 + MPMX20_03397 0.32 -0.3 3,578,755 + MPMX20_03397 0.32 -1.1 3,578,811 + MPMX20_03397 0.35 -1.6 3,578,816 + MPMX20_03397 0.35 -1.3 3,578,853 + MPMX20_03397 0.36 +2.4 3,578,863 + MPMX20_03397 0.37 -1.1 3,578,957 - MPMX20_03397 0.41 -1.7 3,579,012 - MPMX20_03397 0.43 -0.1 3,579,012 - MPMX20_03397 0.43 +0.0 3,579,012 - MPMX20_03397 0.43 -1.1 3,579,051 + MPMX20_03397 0.45 +0.3 3,579,077 + MPMX20_03397 0.46 +0.9 3,579,119 - MPMX20_03397 0.48 -1.2 3,579,136 + MPMX20_03397 0.49 -2.2 3,579,375 + MPMX20_03397 0.59 -0.4 3,579,499 + MPMX20_03397 0.64 -0.3 3,579,507 - MPMX20_03397 0.65 -1.5 3,579,587 - MPMX20_03397 0.68 -1.3 3,579,616 + MPMX20_03397 0.69 -0.3 3,579,616 + MPMX20_03397 0.69 -1.3 3,579,624 - MPMX20_03397 0.70 -0.2 3,579,624 - MPMX20_03397 0.70 +0.5 3,579,654 - MPMX20_03397 0.71 -1.2 3,579,659 + MPMX20_03397 0.71 +2.7 3,579,828 + MPMX20_03397 0.78 -1.7 3,579,856 - MPMX20_03397 0.80 +2.8 3,579,863 - MPMX20_03397 0.80 -0.9 3,579,865 - MPMX20_03397 0.80 -0.6 3,579,893 - MPMX20_03397 0.81 +0.2 3,579,964 + MPMX20_03397 0.84 -0.1 3,579,984 - MPMX20_03397 0.85 +0.3 3,580,028 + MPMX20_03397 0.87 -0.1 3,580,028 + MPMX20_03397 0.87 -0.1 3,580,028 + MPMX20_03397 0.87 -2.0 3,580,059 - MPMX20_03397 0.88 -0.6 3,580,167 + -1.7 3,580,217 - +1.3 3,580,259 - -0.1 3,580,297 + -0.0 3,580,367 - -2.7 3,580,426 - +0.1 3,580,441 - -1.1 3,580,450 + +2.5 3,580,458 - -1.3 3,580,458 - +0.7 3,580,458 - +0.2 3,580,531 + -0.4 3,580,560 + +0.0 3,580,563 - -0.9 3,580,589 - -0.9 3,580,644 - -1.1 3,580,661 + +0.7 3,580,744 - +0.9 3,580,784 + +0.1 3,580,792 - -0.5 3,580,904 + MPMX20_03398 0.12 +0.5 3,580,993 + MPMX20_03398 0.13 -0.5 3,580,993 + MPMX20_03398 0.13 -0.1 3,580,993 + MPMX20_03398 0.13 -0.7 3,581,026 + MPMX20_03398 0.14 -0.8 3,581,036 + MPMX20_03398 0.14 -0.7 3,581,092 + MPMX20_03398 0.15 -1.4 3,581,092 + MPMX20_03398 0.15 +5.0 3,581,092 + MPMX20_03398 0.15 -1.9 3,581,100 - MPMX20_03398 0.16 -0.4 3,581,100 - MPMX20_03398 0.16 -0.0 3,581,248 + MPMX20_03398 0.18 -0.9 3,581,248 + MPMX20_03398 0.18 +0.9
Or see this region's nucleotide sequence