Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03259 and MPMX20_03260 are separated by 50 nucleotides MPMX20_03260 and MPMX20_03261 are separated by 13 nucleotides MPMX20_03261 and MPMX20_03262 overlap by 1 nucleotides MPMX20_03262 and MPMX20_03263 overlap by 1 nucleotides
MPMX20_03259: MPMX20_03259 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC, at 3,429,765 to 3,431,762
_03259
MPMX20_03260: MPMX20_03260 - hypothetical protein, at 3,431,813 to 3,432,091
_03260
MPMX20_03261: MPMX20_03261 - Elongation factor P hydroxylase, at 3,432,105 to 3,432,650
_03261
MPMX20_03262: MPMX20_03262 - putative membrane transporter protein YfcA, at 3,432,650 to 3,433,459
_03262
MPMX20_03263: MPMX20_03263 - Penicillin-insensitive murein endopeptidase, at 3,433,459 to 3,434,283
_03263
Position (kb)
3432
3433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3431.138 kb on + strand, within MPMX20_03259 at 3431.146 kb on - strand, within MPMX20_03259 at 3431.162 kb on + strand, within MPMX20_03259 at 3431.173 kb on + strand, within MPMX20_03259 at 3431.194 kb on - strand, within MPMX20_03259 at 3431.207 kb on + strand, within MPMX20_03259 at 3431.311 kb on - strand, within MPMX20_03259 at 3431.311 kb on - strand, within MPMX20_03259 at 3431.311 kb on - strand, within MPMX20_03259 at 3431.395 kb on + strand, within MPMX20_03259 at 3431.454 kb on + strand, within MPMX20_03259 at 3431.462 kb on - strand, within MPMX20_03259 at 3431.469 kb on + strand, within MPMX20_03259 at 3431.631 kb on - strand at 3431.660 kb on + strand at 3431.668 kb on - strand at 3431.689 kb on + strand at 3431.689 kb on + strand at 3431.689 kb on + strand at 3431.735 kb on - strand at 3431.833 kb on + strand at 3431.839 kb on + strand at 3431.882 kb on + strand, within MPMX20_03260 at 3431.956 kb on - strand, within MPMX20_03260 at 3431.969 kb on - strand, within MPMX20_03260 at 3431.981 kb on - strand, within MPMX20_03260 at 3432.035 kb on - strand, within MPMX20_03260 at 3432.035 kb on - strand, within MPMX20_03260 at 3432.144 kb on - strand at 3432.151 kb on - strand at 3432.285 kb on - strand, within MPMX20_03261 at 3432.295 kb on - strand, within MPMX20_03261 at 3432.431 kb on + strand, within MPMX20_03261 at 3432.452 kb on + strand, within MPMX20_03261 at 3432.452 kb on + strand, within MPMX20_03261 at 3432.452 kb on + strand, within MPMX20_03261 at 3432.452 kb on + strand, within MPMX20_03261 at 3432.452 kb on + strand, within MPMX20_03261 at 3432.452 kb on + strand, within MPMX20_03261 at 3432.460 kb on - strand, within MPMX20_03261 at 3432.460 kb on - strand, within MPMX20_03261 at 3432.460 kb on - strand, within MPMX20_03261 at 3432.462 kb on - strand, within MPMX20_03261 at 3432.514 kb on + strand, within MPMX20_03261 at 3432.565 kb on + strand, within MPMX20_03261 at 3432.573 kb on - strand, within MPMX20_03261 at 3432.656 kb on - strand at 3432.675 kb on - strand at 3432.676 kb on - strand at 3432.676 kb on - strand at 3432.690 kb on - strand at 3432.703 kb on + strand at 3432.713 kb on + strand at 3432.726 kb on - strand at 3432.962 kb on + strand, within MPMX20_03262 at 3432.964 kb on - strand, within MPMX20_03262 at 3433.058 kb on + strand, within MPMX20_03262 at 3433.058 kb on + strand, within MPMX20_03262 at 3433.147 kb on + strand, within MPMX20_03262 at 3433.147 kb on + strand, within MPMX20_03262 at 3433.147 kb on + strand, within MPMX20_03262 at 3433.230 kb on + strand, within MPMX20_03262 at 3433.277 kb on + strand, within MPMX20_03262 at 3433.279 kb on + strand, within MPMX20_03262 at 3433.287 kb on - strand, within MPMX20_03262 at 3433.287 kb on - strand, within MPMX20_03262 at 3433.516 kb on + strand at 3433.526 kb on + strand at 3433.526 kb on + strand at 3433.527 kb on + strand at 3433.534 kb on - strand at 3433.534 kb on - strand at 3433.535 kb on - strand at 3433.551 kb on + strand, within MPMX20_03263 at 3433.569 kb on + strand, within MPMX20_03263 at 3433.582 kb on + strand, within MPMX20_03263 at 3433.639 kb on + strand, within MPMX20_03263
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,431,138 + MPMX20_03259 0.69 -0.1 3,431,146 - MPMX20_03259 0.69 +0.0 3,431,162 + MPMX20_03259 0.70 -0.5 3,431,173 + MPMX20_03259 0.70 -0.2 3,431,194 - MPMX20_03259 0.72 -1.6 3,431,207 + MPMX20_03259 0.72 +0.2 3,431,311 - MPMX20_03259 0.77 -2.1 3,431,311 - MPMX20_03259 0.77 -0.9 3,431,311 - MPMX20_03259 0.77 +1.0 3,431,395 + MPMX20_03259 0.82 -1.2 3,431,454 + MPMX20_03259 0.85 -0.8 3,431,462 - MPMX20_03259 0.85 -0.7 3,431,469 + MPMX20_03259 0.85 +3.5 3,431,631 - -0.5 3,431,660 + -0.1 3,431,668 - +1.3 3,431,689 + -0.0 3,431,689 + -0.3 3,431,689 + +2.1 3,431,735 - +1.3 3,431,833 + -0.4 3,431,839 + +2.1 3,431,882 + MPMX20_03260 0.25 +0.1 3,431,956 - MPMX20_03260 0.51 +1.7 3,431,969 - MPMX20_03260 0.56 -0.4 3,431,981 - MPMX20_03260 0.60 -0.5 3,432,035 - MPMX20_03260 0.80 +0.6 3,432,035 - MPMX20_03260 0.80 +0.5 3,432,144 - -0.7 3,432,151 - -2.1 3,432,285 - MPMX20_03261 0.33 -0.1 3,432,295 - MPMX20_03261 0.35 -0.1 3,432,431 + MPMX20_03261 0.60 -0.5 3,432,452 + MPMX20_03261 0.64 -1.2 3,432,452 + MPMX20_03261 0.64 +0.1 3,432,452 + MPMX20_03261 0.64 +1.2 3,432,452 + MPMX20_03261 0.64 +0.4 3,432,452 + MPMX20_03261 0.64 +0.2 3,432,452 + MPMX20_03261 0.64 +0.5 3,432,460 - MPMX20_03261 0.65 -0.3 3,432,460 - MPMX20_03261 0.65 +0.5 3,432,460 - MPMX20_03261 0.65 -1.7 3,432,462 - MPMX20_03261 0.65 -1.3 3,432,514 + MPMX20_03261 0.75 -0.1 3,432,565 + MPMX20_03261 0.84 -0.6 3,432,573 - MPMX20_03261 0.86 +0.7 3,432,656 - +0.9 3,432,675 - -0.5 3,432,676 - -1.7 3,432,676 - +1.1 3,432,690 - +0.8 3,432,703 + -0.4 3,432,713 + +1.6 3,432,726 - +1.5 3,432,962 + MPMX20_03262 0.39 -0.5 3,432,964 - MPMX20_03262 0.39 -0.4 3,433,058 + MPMX20_03262 0.50 -0.4 3,433,058 + MPMX20_03262 0.50 -0.9 3,433,147 + MPMX20_03262 0.61 -0.0 3,433,147 + MPMX20_03262 0.61 -1.5 3,433,147 + MPMX20_03262 0.61 -0.3 3,433,230 + MPMX20_03262 0.72 -1.2 3,433,277 + MPMX20_03262 0.77 +0.2 3,433,279 + MPMX20_03262 0.78 -0.2 3,433,287 - MPMX20_03262 0.79 -0.2 3,433,287 - MPMX20_03262 0.79 +1.2 3,433,516 + -0.1 3,433,526 + -0.2 3,433,526 + +0.1 3,433,527 + +1.5 3,433,534 - +0.0 3,433,534 - -0.4 3,433,535 - -0.1 3,433,551 + MPMX20_03263 0.11 -3.2 3,433,569 + MPMX20_03263 0.13 +1.5 3,433,582 + MPMX20_03263 0.15 +1.5 3,433,639 + MPMX20_03263 0.22 -1.9
Or see this region's nucleotide sequence