Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01293

Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01292 and MPMX20_01293 are separated by 16 nucleotidesMPMX20_01293 and MPMX20_01294 are separated by 2 nucleotides MPMX20_01292: MPMX20_01292 - Endolytic peptidoglycan transglycosylase RlpA, at 1,352,686 to 1,353,798 _01292 MPMX20_01293: MPMX20_01293 - Peptidoglycan glycosyltransferase MrdB, at 1,353,815 to 1,354,927 _01293 MPMX20_01294: MPMX20_01294 - Peptidoglycan D,D-transpeptidase MrdA, at 1,354,930 to 1,356,831 _01294 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1352.826 kb on - strand, within MPMX20_01292at 1352.871 kb on + strand, within MPMX20_01292at 1352.879 kb on - strand, within MPMX20_01292at 1352.885 kb on + strand, within MPMX20_01292at 1352.949 kb on - strand, within MPMX20_01292at 1353.136 kb on + strand, within MPMX20_01292at 1353.144 kb on - strand, within MPMX20_01292at 1353.193 kb on + strand, within MPMX20_01292at 1353.216 kb on - strand, within MPMX20_01292at 1353.216 kb on - strand, within MPMX20_01292at 1353.251 kb on + strand, within MPMX20_01292at 1353.302 kb on - strand, within MPMX20_01292at 1353.306 kb on + strand, within MPMX20_01292at 1353.319 kb on - strand, within MPMX20_01292at 1353.334 kb on - strand, within MPMX20_01292at 1353.342 kb on - strand, within MPMX20_01292at 1353.352 kb on - strand, within MPMX20_01292at 1353.376 kb on + strand, within MPMX20_01292at 1353.438 kb on - strand, within MPMX20_01292at 1353.510 kb on + strand, within MPMX20_01292at 1353.555 kb on - strand, within MPMX20_01292at 1353.561 kb on + strand, within MPMX20_01292at 1353.569 kb on - strand, within MPMX20_01292at 1353.721 kb on - strandat 1354.982 kb on - strandat 1355.003 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,352,826 - MPMX20_01292 0.13 +2.5
1,352,871 + MPMX20_01292 0.17 +3.4
1,352,879 - MPMX20_01292 0.17 +1.1
1,352,885 + MPMX20_01292 0.18 -0.3
1,352,949 - MPMX20_01292 0.24 +0.9
1,353,136 + MPMX20_01292 0.40 +0.3
1,353,144 - MPMX20_01292 0.41 +0.6
1,353,193 + MPMX20_01292 0.46 -3.3
1,353,216 - MPMX20_01292 0.48 +0.1
1,353,216 - MPMX20_01292 0.48 -1.2
1,353,251 + MPMX20_01292 0.51 +0.8
1,353,302 - MPMX20_01292 0.55 -1.2
1,353,306 + MPMX20_01292 0.56 -0.6
1,353,319 - MPMX20_01292 0.57 -0.4
1,353,334 - MPMX20_01292 0.58 +1.2
1,353,342 - MPMX20_01292 0.59 -0.7
1,353,352 - MPMX20_01292 0.60 -1.0
1,353,376 + MPMX20_01292 0.62 -0.2
1,353,438 - MPMX20_01292 0.68 -0.4
1,353,510 + MPMX20_01292 0.74 +0.2
1,353,555 - MPMX20_01292 0.78 +0.4
1,353,561 + MPMX20_01292 0.79 +0.1
1,353,569 - MPMX20_01292 0.79 -0.3
1,353,721 - -1.2
1,354,982 - -0.3
1,355,003 - -0.9

Or see this region's nucleotide sequence