Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00833

Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00831 and MPMX20_00832 are separated by 176 nucleotidesMPMX20_00832 and MPMX20_00833 overlap by 11 nucleotidesMPMX20_00833 and MPMX20_00834 are separated by 73 nucleotides MPMX20_00831: MPMX20_00831 - RNA polymerase-binding transcription factor DksA, at 873,131 to 873,586 _00831 MPMX20_00832: MPMX20_00832 - Sugar fermentation stimulation protein A, at 873,763 to 874,467 _00832 MPMX20_00833: MPMX20_00833 - RNA 2',3'-cyclic phosphodiesterase, at 874,457 to 875,011 _00833 MPMX20_00834: MPMX20_00834 - ATP-dependent RNA helicase HrpB, at 875,085 to 877,514 _00834 Position (kb) 874 875 876Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 873.470 kb on - strand, within MPMX20_00831at 873.470 kb on - strand, within MPMX20_00831at 873.484 kb on - strand, within MPMX20_00831at 873.486 kb on - strand, within MPMX20_00831at 873.596 kb on + strandat 873.608 kb on + strandat 873.608 kb on + strandat 873.616 kb on - strandat 873.616 kb on - strandat 873.617 kb on + strandat 873.650 kb on - strandat 873.650 kb on - strandat 873.683 kb on + strandat 873.691 kb on + strandat 873.691 kb on - strandat 873.691 kb on - strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.737 kb on - strandat 873.762 kb on - strandat 873.802 kb on - strandat 873.826 kb on + strandat 873.827 kb on + strandat 873.834 kb on + strand, within MPMX20_00832at 873.842 kb on + strand, within MPMX20_00832at 873.930 kb on - strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.981 kb on - strand, within MPMX20_00832at 873.999 kb on - strand, within MPMX20_00832at 874.005 kb on + strand, within MPMX20_00832at 874.007 kb on - strand, within MPMX20_00832at 874.013 kb on - strand, within MPMX20_00832at 874.092 kb on - strand, within MPMX20_00832at 874.112 kb on - strand, within MPMX20_00832at 874.125 kb on - strand, within MPMX20_00832at 874.157 kb on + strand, within MPMX20_00832at 874.166 kb on + strand, within MPMX20_00832at 874.167 kb on + strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.244 kb on + strand, within MPMX20_00832at 874.271 kb on - strand, within MPMX20_00832at 874.313 kb on - strand, within MPMX20_00832at 874.340 kb on - strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.369 kb on - strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.374 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.394 kb on - strand, within MPMX20_00832at 874.404 kb on - strandat 874.434 kb on + strandat 874.480 kb on + strandat 874.510 kb on - strandat 874.528 kb on - strand, within MPMX20_00833at 874.532 kb on + strand, within MPMX20_00833at 874.540 kb on - strand, within MPMX20_00833at 874.559 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833at 874.676 kb on - strand, within MPMX20_00833at 874.711 kb on - strand, within MPMX20_00833at 874.746 kb on - strand, within MPMX20_00833at 874.756 kb on - strand, within MPMX20_00833at 874.795 kb on - strand, within MPMX20_00833at 874.851 kb on - strand, within MPMX20_00833at 875.007 kb on + strandat 875.029 kb on + strandat 875.037 kb on - strandat 875.037 kb on - strandat 875.061 kb on + strandat 875.071 kb on + strandat 875.071 kb on - strandat 875.079 kb on - strandat 875.079 kb on - strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.130 kb on + strandat 875.138 kb on - strandat 875.138 kb on - strandat 875.138 kb on - strandat 875.138 kb on - strandat 875.171 kb on - strandat 875.199 kb on + strandat 875.214 kb on - strandat 875.280 kb on - strandat 875.324 kb on + strandat 875.324 kb on + strandat 875.324 kb on + strandat 875.326 kb on - strandat 875.332 kb on - strand, within MPMX20_00834at 875.358 kb on - strand, within MPMX20_00834at 875.368 kb on + strand, within MPMX20_00834at 875.375 kb on + strand, within MPMX20_00834at 875.391 kb on + strand, within MPMX20_00834at 875.399 kb on - strand, within MPMX20_00834at 875.414 kb on - strand, within MPMX20_00834at 875.421 kb on + strand, within MPMX20_00834at 875.464 kb on + strand, within MPMX20_00834at 875.472 kb on - strand, within MPMX20_00834at 875.486 kb on + strand, within MPMX20_00834at 875.538 kb on - strand, within MPMX20_00834at 875.551 kb on + strand, within MPMX20_00834at 875.564 kb on - strand, within MPMX20_00834at 875.641 kb on + strand, within MPMX20_00834at 875.708 kb on - strand, within MPMX20_00834at 875.746 kb on + strand, within MPMX20_00834at 875.751 kb on + strand, within MPMX20_00834at 875.754 kb on - strand, within MPMX20_00834at 875.779 kb on - strand, within MPMX20_00834at 875.846 kb on + strand, within MPMX20_00834at 875.879 kb on + strand, within MPMX20_00834at 875.879 kb on + strand, within MPMX20_00834at 875.879 kb on + strand, within MPMX20_00834at 875.887 kb on - strand, within MPMX20_00834at 875.887 kb on - strand, within MPMX20_00834at 875.943 kb on + strand, within MPMX20_00834at 875.943 kb on + strand, within MPMX20_00834at 875.951 kb on - strand, within MPMX20_00834at 875.953 kb on + strand, within MPMX20_00834at 875.958 kb on + strand, within MPMX20_00834at 875.960 kb on + strand, within MPMX20_00834at 875.960 kb on + strand, within MPMX20_00834at 875.961 kb on - strand, within MPMX20_00834at 875.961 kb on - strand, within MPMX20_00834at 875.963 kb on - strand, within MPMX20_00834at 875.967 kb on + strand, within MPMX20_00834at 875.968 kb on - strand, within MPMX20_00834at 875.996 kb on + strand, within MPMX20_00834

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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873,470 - MPMX20_00831 0.74 -4.2
873,470 - MPMX20_00831 0.74 -1.1
873,484 - MPMX20_00831 0.77 -2.0
873,486 - MPMX20_00831 0.78 -1.4
873,596 + -1.8
873,608 + -1.5
873,608 + -0.5
873,616 - -0.2
873,616 - -0.3
873,617 + -2.3
873,650 - +0.9
873,650 - -1.5
873,683 + +1.6
873,691 + -0.7
873,691 - -0.3
873,691 - +0.9
873,693 + +0.5
873,693 + +0.0
873,693 + +0.4
873,737 - +0.6
873,762 - -0.4
873,802 - +0.3
873,826 + -1.5
873,827 + +0.2
873,834 + MPMX20_00832 0.10 -1.0
873,842 + MPMX20_00832 0.11 +1.5
873,930 - MPMX20_00832 0.24 -0.3
873,937 + MPMX20_00832 0.25 +0.8
873,937 + MPMX20_00832 0.25 +1.1
873,937 + MPMX20_00832 0.25 +0.5
873,945 - MPMX20_00832 0.26 +1.1
873,945 - MPMX20_00832 0.26 +0.1
873,945 - MPMX20_00832 0.26 +0.4
873,945 - MPMX20_00832 0.26 +1.5
873,945 - MPMX20_00832 0.26 +1.6
873,945 - MPMX20_00832 0.26 +0.1
873,971 - MPMX20_00832 0.30 -0.5
873,971 - MPMX20_00832 0.30 -0.9
873,971 - MPMX20_00832 0.30 +1.5
873,976 - MPMX20_00832 0.30 -0.9
873,976 - MPMX20_00832 0.30 -0.9
873,981 - MPMX20_00832 0.31 +0.0
873,999 - MPMX20_00832 0.33 -0.8
874,005 + MPMX20_00832 0.34 -0.2
874,007 - MPMX20_00832 0.35 +0.0
874,013 - MPMX20_00832 0.35 +0.0
874,092 - MPMX20_00832 0.47 -1.4
874,112 - MPMX20_00832 0.50 +0.6
874,125 - MPMX20_00832 0.51 -0.2
874,157 + MPMX20_00832 0.56 -1.0
874,166 + MPMX20_00832 0.57 -0.2
874,167 + MPMX20_00832 0.57 -0.8
874,175 - MPMX20_00832 0.58 +0.8
874,175 - MPMX20_00832 0.58 -0.7
874,175 - MPMX20_00832 0.58 +0.0
874,186 + MPMX20_00832 0.60 -0.6
874,186 + MPMX20_00832 0.60 +0.6
874,194 - MPMX20_00832 0.61 -0.1
874,194 - MPMX20_00832 0.61 +0.0
874,194 - MPMX20_00832 0.61 -0.2
874,194 - MPMX20_00832 0.61 +0.0
874,244 + MPMX20_00832 0.68 -0.2
874,271 - MPMX20_00832 0.72 -1.1
874,313 - MPMX20_00832 0.78 -1.5
874,340 - MPMX20_00832 0.82 -0.4
874,355 + MPMX20_00832 0.84 +1.1
874,355 + MPMX20_00832 0.84 +0.5
874,369 - MPMX20_00832 0.86 +1.7
874,370 + MPMX20_00832 0.86 -0.1
874,370 + MPMX20_00832 0.86 +1.5
874,374 - MPMX20_00832 0.87 +0.1
874,378 - MPMX20_00832 0.87 +0.3
874,378 - MPMX20_00832 0.87 -2.5
874,394 - MPMX20_00832 0.90 +0.5
874,404 - -0.2
874,434 + -1.6
874,480 + -0.4
874,510 - +1.2
874,528 - MPMX20_00833 0.13 +0.3
874,532 + MPMX20_00833 0.14 +0.5
874,540 - MPMX20_00833 0.15 -0.1
874,559 + MPMX20_00833 0.18 -0.1
874,560 + MPMX20_00833 0.19 -0.1
874,560 + MPMX20_00833 0.19 -0.6
874,676 - MPMX20_00833 0.39 -0.8
874,711 - MPMX20_00833 0.46 -0.1
874,746 - MPMX20_00833 0.52 -1.0
874,756 - MPMX20_00833 0.54 -0.5
874,795 - MPMX20_00833 0.61 +1.8
874,851 - MPMX20_00833 0.71 -0.1
875,007 + +0.2
875,029 + +1.5
875,037 - +1.5
875,037 - +0.8
875,061 + -0.7
875,071 + -1.2
875,071 - -0.1
875,079 - -1.2
875,079 - -0.1
875,130 + +0.6
875,130 + -1.5
875,130 + +0.0
875,130 + +1.3
875,130 + +0.5
875,130 + -1.4
875,130 + -1.4
875,130 + -0.9
875,130 + -0.5
875,138 - -0.2
875,138 - -1.2
875,138 - -0.7
875,138 - +0.8
875,171 - -0.3
875,199 + +1.5
875,214 - -0.0
875,280 - +0.2
875,324 + +0.4
875,324 + -0.5
875,324 + -1.4
875,326 - +1.5
875,332 - MPMX20_00834 0.10 +0.1
875,358 - MPMX20_00834 0.11 -0.2
875,368 + MPMX20_00834 0.12 -2.4
875,375 + MPMX20_00834 0.12 -0.9
875,391 + MPMX20_00834 0.13 +1.5
875,399 - MPMX20_00834 0.13 +0.6
875,414 - MPMX20_00834 0.14 +1.5
875,421 + MPMX20_00834 0.14 -0.5
875,464 + MPMX20_00834 0.16 -0.4
875,472 - MPMX20_00834 0.16 -1.5
875,486 + MPMX20_00834 0.17 -0.0
875,538 - MPMX20_00834 0.19 +0.9
875,551 + MPMX20_00834 0.19 -0.4
875,564 - MPMX20_00834 0.20 +2.0
875,641 + MPMX20_00834 0.23 -0.8
875,708 - MPMX20_00834 0.26 +0.3
875,746 + MPMX20_00834 0.27 +0.5
875,751 + MPMX20_00834 0.27 +0.5
875,754 - MPMX20_00834 0.28 -0.9
875,779 - MPMX20_00834 0.29 +2.8
875,846 + MPMX20_00834 0.31 -0.3
875,879 + MPMX20_00834 0.33 -0.1
875,879 + MPMX20_00834 0.33 -0.5
875,879 + MPMX20_00834 0.33 -0.9
875,887 - MPMX20_00834 0.33 +0.9
875,887 - MPMX20_00834 0.33 +1.6
875,943 + MPMX20_00834 0.35 +1.8
875,943 + MPMX20_00834 0.35 -0.2
875,951 - MPMX20_00834 0.36 +1.0
875,953 + MPMX20_00834 0.36 -0.4
875,958 + MPMX20_00834 0.36 -0.1
875,960 + MPMX20_00834 0.36 -1.7
875,960 + MPMX20_00834 0.36 -0.9
875,961 - MPMX20_00834 0.36 -2.2
875,961 - MPMX20_00834 0.36 -0.5
875,963 - MPMX20_00834 0.36 -1.1
875,967 + MPMX20_00834 0.36 -0.7
875,968 - MPMX20_00834 0.36 +0.5
875,996 + MPMX20_00834 0.37 +0.8

Or see this region's nucleotide sequence