Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00813 and MPMX20_00814 are separated by 31 nucleotides MPMX20_00814 and MPMX20_00815 are separated by 0 nucleotides MPMX20_00815 and MPMX20_00816 are separated by 116 nucleotides MPMX20_00816 and MPMX20_00817 are separated by 67 nucleotides
MPMX20_00813: MPMX20_00813 - hypothetical protein, at 856,129 to 856,491
_00813
MPMX20_00814: MPMX20_00814 - S-adenosylmethionine decarboxylase proenzyme, at 856,523 to 857,317
_00814
MPMX20_00815: MPMX20_00815 - Polyamine aminopropyltransferase, at 857,318 to 858,187
_00815
MPMX20_00816: MPMX20_00816 - hypothetical protein, at 858,304 to 858,690
_00816
MPMX20_00817: MPMX20_00817 - Blue copper oxidase CueO, at 858,758 to 860,356
_00817
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 856.342 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.406 kb on + strand, within MPMX20_00813 at 856.465 kb on + strand at 856.494 kb on + strand at 856.564 kb on + strand at 856.572 kb on - strand at 856.577 kb on - strand at 856.579 kb on + strand at 856.592 kb on - strand at 856.615 kb on - strand, within MPMX20_00814 at 856.633 kb on - strand, within MPMX20_00814 at 856.748 kb on + strand, within MPMX20_00814 at 856.758 kb on + strand, within MPMX20_00814 at 856.791 kb on + strand, within MPMX20_00814 at 856.804 kb on + strand, within MPMX20_00814 at 856.804 kb on + strand, within MPMX20_00814 at 856.866 kb on - strand, within MPMX20_00814 at 856.909 kb on - strand, within MPMX20_00814 at 856.959 kb on + strand, within MPMX20_00814 at 856.976 kb on + strand, within MPMX20_00814 at 856.976 kb on + strand, within MPMX20_00814 at 857.007 kb on + strand, within MPMX20_00814 at 857.021 kb on + strand, within MPMX20_00814 at 857.055 kb on - strand, within MPMX20_00814 at 857.055 kb on - strand, within MPMX20_00814 at 857.055 kb on - strand, within MPMX20_00814 at 857.057 kb on + strand, within MPMX20_00814 at 857.062 kb on + strand, within MPMX20_00814 at 857.070 kb on - strand, within MPMX20_00814 at 857.192 kb on - strand, within MPMX20_00814 at 857.197 kb on - strand, within MPMX20_00814 at 857.288 kb on + strand at 857.302 kb on + strand at 857.302 kb on - strand at 857.310 kb on - strand at 857.329 kb on + strand at 857.366 kb on + strand at 857.374 kb on - strand at 857.374 kb on - strand at 857.378 kb on + strand at 857.417 kb on + strand, within MPMX20_00815 at 857.440 kb on - strand, within MPMX20_00815 at 857.468 kb on + strand, within MPMX20_00815 at 857.500 kb on - strand, within MPMX20_00815 at 857.500 kb on - strand, within MPMX20_00815 at 857.591 kb on - strand, within MPMX20_00815 at 857.638 kb on + strand, within MPMX20_00815 at 857.646 kb on - strand, within MPMX20_00815 at 857.646 kb on - strand, within MPMX20_00815 at 857.646 kb on - strand, within MPMX20_00815 at 857.704 kb on + strand, within MPMX20_00815 at 857.735 kb on + strand, within MPMX20_00815 at 857.735 kb on + strand, within MPMX20_00815 at 857.735 kb on + strand, within MPMX20_00815 at 857.743 kb on - strand, within MPMX20_00815 at 857.743 kb on - strand, within MPMX20_00815 at 857.765 kb on - strand, within MPMX20_00815 at 857.811 kb on + strand, within MPMX20_00815 at 857.811 kb on + strand, within MPMX20_00815 at 857.819 kb on - strand, within MPMX20_00815 at 857.828 kb on + strand, within MPMX20_00815 at 857.828 kb on + strand, within MPMX20_00815 at 857.914 kb on + strand, within MPMX20_00815 at 857.922 kb on - strand, within MPMX20_00815 at 857.922 kb on - strand, within MPMX20_00815 at 857.948 kb on + strand, within MPMX20_00815 at 857.974 kb on + strand, within MPMX20_00815 at 858.119 kb on - strand at 858.142 kb on - strand at 858.142 kb on - strand at 858.142 kb on - strand at 858.197 kb on + strand at 858.259 kb on - strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.272 kb on + strand at 858.280 kb on - strand at 858.280 kb on - strand at 858.280 kb on - strand at 858.280 kb on - strand at 858.280 kb on - strand at 858.280 kb on - strand at 858.280 kb on - strand at 858.282 kb on + strand at 858.284 kb on + strand at 858.284 kb on + strand at 858.284 kb on + strand at 858.340 kb on + strand at 858.543 kb on - strand, within MPMX20_00816 at 858.545 kb on + strand, within MPMX20_00816 at 858.564 kb on - strand, within MPMX20_00816 at 858.565 kb on - strand, within MPMX20_00816 at 858.585 kb on + strand, within MPMX20_00816 at 858.585 kb on + strand, within MPMX20_00816 at 858.585 kb on + strand, within MPMX20_00816 at 858.593 kb on - strand, within MPMX20_00816 at 858.595 kb on - strand, within MPMX20_00816 at 858.661 kb on - strand at 858.700 kb on - strand at 858.700 kb on - strand at 858.857 kb on + strand at 858.865 kb on - strand at 858.918 kb on + strand, within MPMX20_00817 at 858.927 kb on + strand, within MPMX20_00817 at 858.928 kb on - strand, within MPMX20_00817 at 859.020 kb on + strand, within MPMX20_00817 at 859.028 kb on - strand, within MPMX20_00817 at 859.033 kb on - strand, within MPMX20_00817 at 859.045 kb on - strand, within MPMX20_00817 at 859.077 kb on + strand, within MPMX20_00817 at 859.101 kb on + strand, within MPMX20_00817 at 859.101 kb on + strand, within MPMX20_00817 at 859.106 kb on + strand, within MPMX20_00817 at 859.115 kb on + strand, within MPMX20_00817 at 859.115 kb on - strand, within MPMX20_00817 at 859.157 kb on - strand, within MPMX20_00817 at 859.187 kb on - strand, within MPMX20_00817
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 856,342 - MPMX20_00813 0.59 -1.4 856,401 - MPMX20_00813 0.75 +1.4 856,401 - MPMX20_00813 0.75 -0.2 856,401 - MPMX20_00813 0.75 -0.1 856,406 + MPMX20_00813 0.76 -0.4 856,465 + -1.3 856,494 + -1.3 856,564 + -0.2 856,572 - +1.7 856,577 - +0.3 856,579 + +0.1 856,592 - -0.0 856,615 - MPMX20_00814 0.12 -0.4 856,633 - MPMX20_00814 0.14 +0.6 856,748 + MPMX20_00814 0.28 +1.5 856,758 + MPMX20_00814 0.30 -0.4 856,791 + MPMX20_00814 0.34 +1.5 856,804 + MPMX20_00814 0.35 -0.9 856,804 + MPMX20_00814 0.35 +0.3 856,866 - MPMX20_00814 0.43 +0.3 856,909 - MPMX20_00814 0.49 +0.0 856,959 + MPMX20_00814 0.55 +0.6 856,976 + MPMX20_00814 0.57 +0.6 856,976 + MPMX20_00814 0.57 -0.5 857,007 + MPMX20_00814 0.61 -1.4 857,021 + MPMX20_00814 0.63 +0.6 857,055 - MPMX20_00814 0.67 +2.8 857,055 - MPMX20_00814 0.67 +0.5 857,055 - MPMX20_00814 0.67 +1.0 857,057 + MPMX20_00814 0.67 -0.1 857,062 + MPMX20_00814 0.68 -0.7 857,070 - MPMX20_00814 0.69 +0.7 857,192 - MPMX20_00814 0.84 +1.5 857,197 - MPMX20_00814 0.85 -0.4 857,288 + -0.1 857,302 + +1.5 857,302 - +0.2 857,310 - -0.5 857,329 + -1.1 857,366 + -0.1 857,374 - -1.5 857,374 - +0.4 857,378 + +0.4 857,417 + MPMX20_00815 0.11 +7.9 857,440 - MPMX20_00815 0.14 -0.4 857,468 + MPMX20_00815 0.17 -2.6 857,500 - MPMX20_00815 0.21 -0.5 857,500 - MPMX20_00815 0.21 +0.4 857,591 - MPMX20_00815 0.31 +1.0 857,638 + MPMX20_00815 0.37 +1.0 857,646 - MPMX20_00815 0.38 -1.1 857,646 - MPMX20_00815 0.38 -0.8 857,646 - MPMX20_00815 0.38 +0.7 857,704 + MPMX20_00815 0.44 -1.4 857,735 + MPMX20_00815 0.48 -2.5 857,735 + MPMX20_00815 0.48 +1.8 857,735 + MPMX20_00815 0.48 +0.8 857,743 - MPMX20_00815 0.49 +0.1 857,743 - MPMX20_00815 0.49 +0.2 857,765 - MPMX20_00815 0.51 -0.1 857,811 + MPMX20_00815 0.57 -1.2 857,811 + MPMX20_00815 0.57 -0.9 857,819 - MPMX20_00815 0.58 -0.3 857,828 + MPMX20_00815 0.59 -0.9 857,828 + MPMX20_00815 0.59 +0.5 857,914 + MPMX20_00815 0.69 -0.1 857,922 - MPMX20_00815 0.69 -0.5 857,922 - MPMX20_00815 0.69 +1.5 857,948 + MPMX20_00815 0.72 +1.5 857,974 + MPMX20_00815 0.75 +2.6 858,119 - +0.2 858,142 - -0.8 858,142 - -0.7 858,142 - +1.2 858,197 + +1.3 858,259 - +0.1 858,272 + +1.5 858,272 + +0.5 858,272 + +1.2 858,272 + -0.5 858,272 + -1.1 858,272 + -0.8 858,272 + +0.3 858,272 + -0.5 858,272 + -0.7 858,280 - +0.4 858,280 - -0.9 858,280 - +0.5 858,280 - +2.1 858,280 - -1.4 858,280 - +0.2 858,280 - +0.5 858,282 + +0.2 858,284 + -2.7 858,284 + -0.5 858,284 + +0.2 858,340 + -1.1 858,543 - MPMX20_00816 0.62 -1.5 858,545 + MPMX20_00816 0.62 +0.3 858,564 - MPMX20_00816 0.67 -1.7 858,565 - MPMX20_00816 0.67 -1.1 858,585 + MPMX20_00816 0.73 -0.1 858,585 + MPMX20_00816 0.73 -1.2 858,585 + MPMX20_00816 0.73 -0.6 858,593 - MPMX20_00816 0.75 +1.1 858,595 - MPMX20_00816 0.75 -1.1 858,661 - +1.7 858,700 - -1.1 858,700 - -0.3 858,857 + -1.3 858,865 - +0.4 858,918 + MPMX20_00817 0.10 -3.2 858,927 + MPMX20_00817 0.11 +0.0 858,928 - MPMX20_00817 0.11 -0.5 859,020 + MPMX20_00817 0.16 +0.4 859,028 - MPMX20_00817 0.17 +0.9 859,033 - MPMX20_00817 0.17 +1.0 859,045 - MPMX20_00817 0.18 -0.7 859,077 + MPMX20_00817 0.20 +0.5 859,101 + MPMX20_00817 0.21 +0.6 859,101 + MPMX20_00817 0.21 -1.2 859,106 + MPMX20_00817 0.22 -1.4 859,115 + MPMX20_00817 0.22 +0.2 859,115 - MPMX20_00817 0.22 +0.8 859,157 - MPMX20_00817 0.25 +0.5 859,187 - MPMX20_00817 0.27 -1.7
Or see this region's nucleotide sequence