Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04288

Experiment: M9 plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04286 and MPMX20_04287 are separated by 67 nucleotidesMPMX20_04287 and MPMX20_04288 overlap by 4 nucleotidesMPMX20_04288 and MPMX20_04289 are separated by 24 nucleotides MPMX20_04286: MPMX20_04286 - Intracellular growth attenuator protein igaA, at 4,469,549 to 4,471,684 _04286 MPMX20_04287: MPMX20_04287 - GMP/IMP nucleotidase YrfG, at 4,471,752 to 4,472,435 _04287 MPMX20_04288: MPMX20_04288 - Heat shock protein 15, at 4,472,432 to 4,472,833 _04288 MPMX20_04289: MPMX20_04289 - 33 kDa chaperonin, at 4,472,858 to 4,473,736 _04289 Position (kb) 4472 4473Strain fitness (log2 ratio) -2 -1 0 1 2at 4471.642 kb on + strandat 4471.647 kb on + strandat 4471.647 kb on + strandat 4471.647 kb on + strandat 4471.647 kb on + strandat 4471.655 kb on - strandat 4471.660 kb on + strandat 4471.715 kb on - strandat 4471.715 kb on - strandat 4471.720 kb on - strandat 4471.743 kb on - strandat 4471.805 kb on - strandat 4471.865 kb on - strand, within MPMX20_04287at 4471.905 kb on + strand, within MPMX20_04287at 4471.957 kb on + strand, within MPMX20_04287at 4471.957 kb on + strand, within MPMX20_04287at 4471.957 kb on + strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.974 kb on - strand, within MPMX20_04287at 4471.986 kb on - strand, within MPMX20_04287at 4472.104 kb on - strand, within MPMX20_04287at 4472.128 kb on + strand, within MPMX20_04287at 4472.209 kb on - strand, within MPMX20_04287at 4472.218 kb on - strand, within MPMX20_04287at 4472.291 kb on - strand, within MPMX20_04287at 4472.302 kb on + strand, within MPMX20_04287at 4472.324 kb on + strand, within MPMX20_04287at 4472.340 kb on + strand, within MPMX20_04287at 4472.349 kb on - strand, within MPMX20_04287at 4472.382 kb on - strandat 4472.382 kb on - strandat 4472.404 kb on + strandat 4472.416 kb on + strandat 4472.424 kb on - strandat 4472.454 kb on + strandat 4472.464 kb on + strandat 4472.473 kb on + strand, within MPMX20_04288at 4472.481 kb on - strand, within MPMX20_04288at 4472.592 kb on + strand, within MPMX20_04288at 4472.592 kb on + strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.621 kb on - strand, within MPMX20_04288at 4472.632 kb on + strand, within MPMX20_04288at 4472.659 kb on + strand, within MPMX20_04288at 4472.675 kb on + strand, within MPMX20_04288at 4472.683 kb on - strand, within MPMX20_04288at 4472.696 kb on + strand, within MPMX20_04288at 4472.696 kb on + strand, within MPMX20_04288at 4472.704 kb on - strand, within MPMX20_04288at 4472.747 kb on - strand, within MPMX20_04288at 4472.771 kb on - strand, within MPMX20_04288at 4472.818 kb on + strandat 4472.826 kb on - strandat 4472.836 kb on - strandat 4472.836 kb on - strandat 4472.841 kb on - strandat 4472.863 kb on - strandat 4473.181 kb on + strand, within MPMX20_04289at 4473.189 kb on - strand, within MPMX20_04289at 4473.243 kb on - strand, within MPMX20_04289at 4473.294 kb on + strand, within MPMX20_04289at 4473.294 kb on + strand, within MPMX20_04289at 4473.294 kb on + strand, within MPMX20_04289at 4473.312 kb on - strand, within MPMX20_04289at 4473.331 kb on + strand, within MPMX20_04289at 4473.416 kb on - strand, within MPMX20_04289at 4473.426 kb on - strand, within MPMX20_04289at 4473.439 kb on + strand, within MPMX20_04289at 4473.452 kb on - strand, within MPMX20_04289at 4473.479 kb on + strand, within MPMX20_04289at 4473.557 kb on + strand, within MPMX20_04289at 4473.565 kb on - strand, within MPMX20_04289at 4473.643 kb on - strand, within MPMX20_04289at 4473.746 kb on + strandat 4473.751 kb on + strandat 4473.752 kb on + strandat 4473.752 kb on + strandat 4473.794 kb on + strandat 4473.812 kb on + strandat 4473.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,471,642 + -0.5
4,471,647 + +0.8
4,471,647 + +2.3
4,471,647 + -1.2
4,471,647 + +0.8
4,471,655 - +0.1
4,471,660 + +2.4
4,471,715 - -0.7
4,471,715 - +0.3
4,471,720 - +0.1
4,471,743 - -0.6
4,471,805 - -0.4
4,471,865 - MPMX20_04287 0.17 -1.4
4,471,905 + MPMX20_04287 0.22 +0.3
4,471,957 + MPMX20_04287 0.30 +0.1
4,471,957 + MPMX20_04287 0.30 -0.7
4,471,957 + MPMX20_04287 0.30 +0.2
4,471,965 - MPMX20_04287 0.31 +1.1
4,471,965 - MPMX20_04287 0.31 +0.3
4,471,965 - MPMX20_04287 0.31 -0.9
4,471,965 - MPMX20_04287 0.31 -0.1
4,471,965 - MPMX20_04287 0.31 -0.3
4,471,965 - MPMX20_04287 0.31 -0.6
4,471,965 - MPMX20_04287 0.31 -0.6
4,471,965 - MPMX20_04287 0.31 +0.1
4,471,974 - MPMX20_04287 0.32 -0.3
4,471,986 - MPMX20_04287 0.34 -0.7
4,472,104 - MPMX20_04287 0.51 +1.3
4,472,128 + MPMX20_04287 0.55 +0.3
4,472,209 - MPMX20_04287 0.67 +0.9
4,472,218 - MPMX20_04287 0.68 +0.1
4,472,291 - MPMX20_04287 0.79 -0.6
4,472,302 + MPMX20_04287 0.80 +1.2
4,472,324 + MPMX20_04287 0.84 -0.1
4,472,340 + MPMX20_04287 0.86 -1.9
4,472,349 - MPMX20_04287 0.87 +0.3
4,472,382 - -0.1
4,472,382 - +0.1
4,472,404 + +0.9
4,472,416 + -0.2
4,472,424 - -0.8
4,472,454 + +0.3
4,472,464 + +0.3
4,472,473 + MPMX20_04288 0.10 +2.7
4,472,481 - MPMX20_04288 0.12 +1.7
4,472,592 + MPMX20_04288 0.40 -1.2
4,472,592 + MPMX20_04288 0.40 +2.3
4,472,600 - MPMX20_04288 0.42 -1.1
4,472,600 - MPMX20_04288 0.42 +0.7
4,472,600 - MPMX20_04288 0.42 +1.1
4,472,600 - MPMX20_04288 0.42 +1.3
4,472,621 - MPMX20_04288 0.47 -0.1
4,472,632 + MPMX20_04288 0.50 -1.9
4,472,659 + MPMX20_04288 0.56 +0.1
4,472,675 + MPMX20_04288 0.60 -0.6
4,472,683 - MPMX20_04288 0.62 +1.3
4,472,696 + MPMX20_04288 0.66 +0.3
4,472,696 + MPMX20_04288 0.66 -0.7
4,472,704 - MPMX20_04288 0.68 +0.2
4,472,747 - MPMX20_04288 0.78 +0.9
4,472,771 - MPMX20_04288 0.84 -0.6
4,472,818 + -0.7
4,472,826 - -0.7
4,472,836 - -0.1
4,472,836 - -0.7
4,472,841 - -0.1
4,472,863 - +0.7
4,473,181 + MPMX20_04289 0.37 +2.3
4,473,189 - MPMX20_04289 0.38 -0.9
4,473,243 - MPMX20_04289 0.44 -0.2
4,473,294 + MPMX20_04289 0.50 -0.0
4,473,294 + MPMX20_04289 0.50 +0.1
4,473,294 + MPMX20_04289 0.50 +0.1
4,473,312 - MPMX20_04289 0.52 -0.7
4,473,331 + MPMX20_04289 0.54 -0.9
4,473,416 - MPMX20_04289 0.63 -0.7
4,473,426 - MPMX20_04289 0.65 +0.1
4,473,439 + MPMX20_04289 0.66 -0.2
4,473,452 - MPMX20_04289 0.68 +0.7
4,473,479 + MPMX20_04289 0.71 +1.8
4,473,557 + MPMX20_04289 0.80 -0.5
4,473,565 - MPMX20_04289 0.80 -1.1
4,473,643 - MPMX20_04289 0.89 -1.1
4,473,746 + -1.1
4,473,751 + +0.1
4,473,752 + -0.2
4,473,752 + -0.9
4,473,794 + +0.4
4,473,812 + -0.6
4,473,830 - -0.3

Or see this region's nucleotide sequence