Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03397

Experiment: 1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03395 and MPMX20_03396 are separated by 169 nucleotidesMPMX20_03396 and MPMX20_03397 are separated by 156 nucleotidesMPMX20_03397 and MPMX20_03398 are separated by 1 nucleotides MPMX20_03395: MPMX20_03395 - Dual-specificity RNA methyltransferase RlmN, at 3,576,082 to 3,577,248 _03395 MPMX20_03396: MPMX20_03396 - Nucleoside diphosphate kinase, at 3,577,418 to 3,577,849 _03396 MPMX20_03397: MPMX20_03397 - Penicillin-binding protein 1C, at 3,578,006 to 3,580,330 _03397 MPMX20_03398: MPMX20_03398 - Alpha-2-macroglobulin, at 3,580,332 to 3,585,284 _03398 Position (kb) 3578 3579 3580 3581Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3577.019 kb on + strand, within MPMX20_03395at 3577.033 kb on + strand, within MPMX20_03395at 3577.062 kb on + strand, within MPMX20_03395at 3577.102 kb on + strand, within MPMX20_03395at 3577.115 kb on - strand, within MPMX20_03395at 3577.165 kb on + strandat 3577.165 kb on + strandat 3577.169 kb on + strandat 3577.221 kb on + strandat 3577.229 kb on - strandat 3577.276 kb on - strandat 3577.282 kb on - strandat 3577.282 kb on - strandat 3577.282 kb on - strandat 3577.282 kb on - strandat 3577.323 kb on - strandat 3577.341 kb on - strandat 3577.343 kb on + strandat 3577.370 kb on - strandat 3577.372 kb on - strandat 3577.411 kb on - strandat 3577.489 kb on + strand, within MPMX20_03396at 3577.543 kb on + strand, within MPMX20_03396at 3577.543 kb on + strand, within MPMX20_03396at 3577.543 kb on + strand, within MPMX20_03396at 3577.545 kb on + strand, within MPMX20_03396at 3577.545 kb on + strand, within MPMX20_03396at 3577.545 kb on + strand, within MPMX20_03396at 3577.551 kb on - strand, within MPMX20_03396at 3577.553 kb on - strand, within MPMX20_03396at 3577.553 kb on - strand, within MPMX20_03396at 3577.603 kb on - strand, within MPMX20_03396at 3577.647 kb on - strand, within MPMX20_03396at 3577.647 kb on - strand, within MPMX20_03396at 3577.653 kb on + strand, within MPMX20_03396at 3577.727 kb on + strand, within MPMX20_03396at 3577.858 kb on + strandat 3577.866 kb on - strandat 3577.895 kb on - strandat 3577.980 kb on + strandat 3577.980 kb on + strandat 3577.988 kb on - strandat 3578.032 kb on + strandat 3578.094 kb on + strandat 3578.153 kb on + strandat 3578.248 kb on + strand, within MPMX20_03397at 3578.248 kb on + strand, within MPMX20_03397at 3578.261 kb on - strand, within MPMX20_03397at 3578.278 kb on - strand, within MPMX20_03397at 3578.299 kb on + strand, within MPMX20_03397at 3578.365 kb on - strand, within MPMX20_03397at 3578.385 kb on - strand, within MPMX20_03397at 3578.638 kb on + strand, within MPMX20_03397at 3578.684 kb on + strand, within MPMX20_03397at 3578.690 kb on - strand, within MPMX20_03397at 3578.749 kb on + strand, within MPMX20_03397at 3578.755 kb on + strand, within MPMX20_03397at 3578.811 kb on + strand, within MPMX20_03397at 3578.816 kb on + strand, within MPMX20_03397at 3578.853 kb on + strand, within MPMX20_03397at 3578.863 kb on + strand, within MPMX20_03397at 3578.957 kb on - strand, within MPMX20_03397at 3579.012 kb on - strand, within MPMX20_03397at 3579.012 kb on - strand, within MPMX20_03397at 3579.012 kb on - strand, within MPMX20_03397at 3579.051 kb on + strand, within MPMX20_03397at 3579.077 kb on + strand, within MPMX20_03397at 3579.119 kb on - strand, within MPMX20_03397at 3579.136 kb on + strand, within MPMX20_03397at 3579.375 kb on + strand, within MPMX20_03397at 3579.499 kb on + strand, within MPMX20_03397at 3579.507 kb on - strand, within MPMX20_03397at 3579.587 kb on - strand, within MPMX20_03397at 3579.616 kb on + strand, within MPMX20_03397at 3579.616 kb on + strand, within MPMX20_03397at 3579.624 kb on - strand, within MPMX20_03397at 3579.624 kb on - strand, within MPMX20_03397at 3579.654 kb on - strand, within MPMX20_03397at 3579.659 kb on + strand, within MPMX20_03397at 3579.828 kb on + strand, within MPMX20_03397at 3579.856 kb on - strand, within MPMX20_03397at 3579.863 kb on - strand, within MPMX20_03397at 3579.865 kb on - strand, within MPMX20_03397at 3579.893 kb on - strand, within MPMX20_03397at 3579.964 kb on + strand, within MPMX20_03397at 3579.984 kb on - strand, within MPMX20_03397at 3580.028 kb on + strand, within MPMX20_03397at 3580.028 kb on + strand, within MPMX20_03397at 3580.028 kb on + strand, within MPMX20_03397at 3580.059 kb on - strand, within MPMX20_03397at 3580.167 kb on + strandat 3580.217 kb on - strandat 3580.259 kb on - strandat 3580.297 kb on + strandat 3580.367 kb on - strandat 3580.426 kb on - strandat 3580.441 kb on - strandat 3580.450 kb on + strandat 3580.458 kb on - strandat 3580.458 kb on - strandat 3580.458 kb on - strandat 3580.531 kb on + strandat 3580.560 kb on + strandat 3580.563 kb on - strandat 3580.589 kb on - strandat 3580.644 kb on - strandat 3580.661 kb on + strandat 3580.744 kb on - strandat 3580.784 kb on + strandat 3580.792 kb on - strandat 3580.904 kb on + strand, within MPMX20_03398at 3580.993 kb on + strand, within MPMX20_03398at 3580.993 kb on + strand, within MPMX20_03398at 3580.993 kb on + strand, within MPMX20_03398at 3581.026 kb on + strand, within MPMX20_03398at 3581.036 kb on + strand, within MPMX20_03398at 3581.092 kb on + strand, within MPMX20_03398at 3581.092 kb on + strand, within MPMX20_03398at 3581.092 kb on + strand, within MPMX20_03398at 3581.100 kb on - strand, within MPMX20_03398at 3581.100 kb on - strand, within MPMX20_03398at 3581.248 kb on + strand, within MPMX20_03398at 3581.248 kb on + strand, within MPMX20_03398

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,577,019 + MPMX20_03395 0.80 +2.2
3,577,033 + MPMX20_03395 0.81 +1.0
3,577,062 + MPMX20_03395 0.84 -1.0
3,577,102 + MPMX20_03395 0.87 +3.3
3,577,115 - MPMX20_03395 0.89 -0.5
3,577,165 + +0.7
3,577,165 + -0.2
3,577,169 + -1.0
3,577,221 + -0.1
3,577,229 - +1.0
3,577,276 - -1.0
3,577,282 - -1.6
3,577,282 - +0.8
3,577,282 - -1.8
3,577,282 - -0.6
3,577,323 - -0.2
3,577,341 - -0.4
3,577,343 + -0.6
3,577,370 - -1.6
3,577,372 - +0.6
3,577,411 - -2.3
3,577,489 + MPMX20_03396 0.16 -3.6
3,577,543 + MPMX20_03396 0.29 -0.3
3,577,543 + MPMX20_03396 0.29 -1.7
3,577,543 + MPMX20_03396 0.29 -1.0
3,577,545 + MPMX20_03396 0.29 -1.3
3,577,545 + MPMX20_03396 0.29 -1.8
3,577,545 + MPMX20_03396 0.29 -2.3
3,577,551 - MPMX20_03396 0.31 -2.5
3,577,553 - MPMX20_03396 0.31 -2.7
3,577,553 - MPMX20_03396 0.31 +1.0
3,577,603 - MPMX20_03396 0.43 -2.9
3,577,647 - MPMX20_03396 0.53 -3.5
3,577,647 - MPMX20_03396 0.53 -3.1
3,577,653 + MPMX20_03396 0.54 -2.5
3,577,727 + MPMX20_03396 0.72 -2.8
3,577,858 + -0.2
3,577,866 - -1.3
3,577,895 - -0.5
3,577,980 + +0.0
3,577,980 + -0.8
3,577,988 - -1.3
3,578,032 + -0.5
3,578,094 + -1.1
3,578,153 + -1.4
3,578,248 + MPMX20_03397 0.10 -0.8
3,578,248 + MPMX20_03397 0.10 -1.2
3,578,261 - MPMX20_03397 0.11 -1.6
3,578,278 - MPMX20_03397 0.12 -0.6
3,578,299 + MPMX20_03397 0.13 -1.3
3,578,365 - MPMX20_03397 0.15 +0.4
3,578,385 - MPMX20_03397 0.16 +0.3
3,578,638 + MPMX20_03397 0.27 +0.2
3,578,684 + MPMX20_03397 0.29 -1.9
3,578,690 - MPMX20_03397 0.29 -0.8
3,578,749 + MPMX20_03397 0.32 -0.6
3,578,755 + MPMX20_03397 0.32 -0.8
3,578,811 + MPMX20_03397 0.35 -0.5
3,578,816 + MPMX20_03397 0.35 +0.8
3,578,853 + MPMX20_03397 0.36 +0.7
3,578,863 + MPMX20_03397 0.37 +1.0
3,578,957 - MPMX20_03397 0.41 -0.2
3,579,012 - MPMX20_03397 0.43 -0.6
3,579,012 - MPMX20_03397 0.43 -1.6
3,579,012 - MPMX20_03397 0.43 -0.1
3,579,051 + MPMX20_03397 0.45 -1.4
3,579,077 + MPMX20_03397 0.46 +0.0
3,579,119 - MPMX20_03397 0.48 -1.0
3,579,136 + MPMX20_03397 0.49 -0.7
3,579,375 + MPMX20_03397 0.59 +0.1
3,579,499 + MPMX20_03397 0.64 +0.8
3,579,507 - MPMX20_03397 0.65 +0.3
3,579,587 - MPMX20_03397 0.68 -0.2
3,579,616 + MPMX20_03397 0.69 +0.5
3,579,616 + MPMX20_03397 0.69 -0.8
3,579,624 - MPMX20_03397 0.70 -0.4
3,579,624 - MPMX20_03397 0.70 +0.0
3,579,654 - MPMX20_03397 0.71 +0.7
3,579,659 + MPMX20_03397 0.71 +1.4
3,579,828 + MPMX20_03397 0.78 +0.4
3,579,856 - MPMX20_03397 0.80 +0.0
3,579,863 - MPMX20_03397 0.80 +0.1
3,579,865 - MPMX20_03397 0.80 -1.1
3,579,893 - MPMX20_03397 0.81 +0.2
3,579,964 + MPMX20_03397 0.84 +1.2
3,579,984 - MPMX20_03397 0.85 -1.1
3,580,028 + MPMX20_03397 0.87 -0.6
3,580,028 + MPMX20_03397 0.87 -0.1
3,580,028 + MPMX20_03397 0.87 -1.2
3,580,059 - MPMX20_03397 0.88 -0.6
3,580,167 + -0.6
3,580,217 - +1.2
3,580,259 - -1.1
3,580,297 + -0.2
3,580,367 - -0.3
3,580,426 - +0.7
3,580,441 - -0.8
3,580,450 + +1.0
3,580,458 - -0.6
3,580,458 - -0.6
3,580,458 - +0.8
3,580,531 + -1.7
3,580,560 + +0.6
3,580,563 - -1.3
3,580,589 - -2.3
3,580,644 - -0.6
3,580,661 + -1.0
3,580,744 - -0.3
3,580,784 + -1.3
3,580,792 - +0.7
3,580,904 + MPMX20_03398 0.12 -0.5
3,580,993 + MPMX20_03398 0.13 -1.1
3,580,993 + MPMX20_03398 0.13 -0.2
3,580,993 + MPMX20_03398 0.13 -1.3
3,581,026 + MPMX20_03398 0.14 -1.5
3,581,036 + MPMX20_03398 0.14 -0.8
3,581,092 + MPMX20_03398 0.15 -0.9
3,581,092 + MPMX20_03398 0.15 -0.3
3,581,092 + MPMX20_03398 0.15 +0.9
3,581,100 - MPMX20_03398 0.16 -2.0
3,581,100 - MPMX20_03398 0.16 -0.8
3,581,248 + MPMX20_03398 0.18 -0.7
3,581,248 + MPMX20_03398 0.18 -0.3

Or see this region's nucleotide sequence