Experiment: 0.1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04502 and MPMX20_04503 are separated by 577 nucleotides MPMX20_04503 and MPMX20_04504 are separated by 27 nucleotides MPMX20_04504 and MPMX20_04505 are separated by 118 nucleotides
MPMX20_04502: MPMX20_04502 - Acetolactate synthase isozyme 2 large subunit, at 4,709,336 to 4,710,982
_04502
MPMX20_04503: MPMX20_04503 - Competence protein ComM, at 4,711,560 to 4,713,080
_04503
MPMX20_04504: MPMX20_04504 - hypothetical protein, at 4,713,108 to 4,713,446
_04504
MPMX20_04505: MPMX20_04505 - HTH-type transcriptional regulator HdfR, at 4,713,565 to 4,714,386
_04505
Position (kb) 4711
4712
4713
4714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4710.562 kb on - strand, within MPMX20_04502 at 4710.608 kb on + strand, within MPMX20_04502 at 4710.674 kb on - strand, within MPMX20_04502 at 4710.717 kb on + strand, within MPMX20_04502 at 4710.725 kb on - strand, within MPMX20_04502 at 4710.751 kb on + strand, within MPMX20_04502 at 4710.752 kb on - strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.766 kb on + strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.774 kb on - strand, within MPMX20_04502 at 4710.814 kb on + strand, within MPMX20_04502 at 4710.814 kb on + strand, within MPMX20_04502 at 4710.849 kb on - strand at 4710.920 kb on + strand at 4710.928 kb on - strand at 4710.960 kb on + strand at 4710.966 kb on - strand at 4711.074 kb on + strand at 4711.409 kb on - strand at 4711.442 kb on - strand at 4711.575 kb on + strand at 4711.632 kb on - strand at 4711.644 kb on - strand at 4711.646 kb on + strand at 4711.661 kb on + strand at 4711.728 kb on + strand, within MPMX20_04503 at 4711.736 kb on - strand, within MPMX20_04503 at 4711.770 kb on + strand, within MPMX20_04503 at 4711.842 kb on - strand, within MPMX20_04503 at 4711.852 kb on - strand, within MPMX20_04503 at 4711.925 kb on + strand, within MPMX20_04503 at 4712.048 kb on - strand, within MPMX20_04503 at 4712.064 kb on + strand, within MPMX20_04503 at 4712.188 kb on + strand, within MPMX20_04503 at 4712.202 kb on - strand, within MPMX20_04503 at 4712.276 kb on + strand, within MPMX20_04503 at 4712.291 kb on - strand, within MPMX20_04503 at 4712.320 kb on - strand, within MPMX20_04503 at 4712.364 kb on + strand, within MPMX20_04503 at 4712.372 kb on - strand, within MPMX20_04503 at 4712.377 kb on + strand, within MPMX20_04503 at 4712.377 kb on - strand, within MPMX20_04503 at 4712.413 kb on - strand, within MPMX20_04503 at 4712.413 kb on - strand, within MPMX20_04503 at 4712.505 kb on - strand, within MPMX20_04503 at 4712.509 kb on - strand, within MPMX20_04503 at 4712.578 kb on - strand, within MPMX20_04503 at 4712.593 kb on + strand, within MPMX20_04503 at 4712.593 kb on + strand, within MPMX20_04503 at 4712.594 kb on + strand, within MPMX20_04503 at 4712.638 kb on + strand, within MPMX20_04503 at 4712.638 kb on + strand, within MPMX20_04503 at 4712.648 kb on - strand, within MPMX20_04503 at 4712.659 kb on + strand, within MPMX20_04503 at 4712.659 kb on + strand, within MPMX20_04503 at 4712.714 kb on + strand, within MPMX20_04503 at 4712.725 kb on + strand, within MPMX20_04503 at 4712.733 kb on - strand, within MPMX20_04503 at 4712.739 kb on + strand, within MPMX20_04503 at 4712.786 kb on + strand, within MPMX20_04503 at 4712.794 kb on - strand, within MPMX20_04503 at 4712.810 kb on + strand, within MPMX20_04503 at 4712.896 kb on + strand, within MPMX20_04503 at 4712.925 kb on - strand, within MPMX20_04503 at 4712.925 kb on - strand, within MPMX20_04503 at 4712.925 kb on - strand, within MPMX20_04503 at 4713.131 kb on + strand at 4713.132 kb on - strand at 4713.132 kb on - strand at 4713.139 kb on + strand at 4713.139 kb on + strand at 4713.139 kb on - strand at 4713.195 kb on - strand, within MPMX20_04504 at 4713.195 kb on - strand, within MPMX20_04504 at 4713.226 kb on + strand, within MPMX20_04504 at 4713.226 kb on + strand, within MPMX20_04504 at 4713.266 kb on - strand, within MPMX20_04504 at 4713.298 kb on + strand, within MPMX20_04504 at 4713.298 kb on + strand, within MPMX20_04504 at 4713.306 kb on - strand, within MPMX20_04504 at 4713.331 kb on + strand, within MPMX20_04504 at 4713.428 kb on + strand at 4713.445 kb on + strand at 4713.453 kb on - strand at 4713.453 kb on - strand at 4713.462 kb on - strand at 4713.491 kb on + strand at 4713.497 kb on - strand at 4713.512 kb on + strand at 4713.635 kb on + strand at 4713.643 kb on - strand at 4713.643 kb on - strand at 4713.725 kb on + strand, within MPMX20_04505 at 4713.733 kb on - strand, within MPMX20_04505 at 4713.733 kb on - strand, within MPMX20_04505 at 4713.759 kb on + strand, within MPMX20_04505 at 4713.790 kb on - strand, within MPMX20_04505 at 4713.800 kb on + strand, within MPMX20_04505 at 4713.818 kb on + strand, within MPMX20_04505 at 4713.824 kb on - strand, within MPMX20_04505 at 4713.826 kb on - strand, within MPMX20_04505 at 4713.826 kb on - strand, within MPMX20_04505 at 4713.826 kb on - strand, within MPMX20_04505 at 4713.847 kb on - strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.894 kb on + strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.902 kb on - strand, within MPMX20_04505 at 4713.998 kb on - strand, within MPMX20_04505 at 4714.044 kb on + strand, within MPMX20_04505 at 4714.044 kb on + strand, within MPMX20_04505
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,710,562 - MPMX20_04502 0.74 +2.6 4,710,608 + MPMX20_04502 0.77 +0.5 4,710,674 - MPMX20_04502 0.81 +0.8 4,710,717 + MPMX20_04502 0.84 +0.8 4,710,725 - MPMX20_04502 0.84 -1.2 4,710,751 + MPMX20_04502 0.86 +0.3 4,710,752 - MPMX20_04502 0.86 -1.3 4,710,766 + MPMX20_04502 0.87 -1.5 4,710,766 + MPMX20_04502 0.87 -0.3 4,710,766 + MPMX20_04502 0.87 +0.1 4,710,766 + MPMX20_04502 0.87 +2.5 4,710,766 + MPMX20_04502 0.87 +0.5 4,710,766 + MPMX20_04502 0.87 +0.7 4,710,766 + MPMX20_04502 0.87 -1.1 4,710,766 + MPMX20_04502 0.87 +0.5 4,710,774 - MPMX20_04502 0.87 -0.4 4,710,774 - MPMX20_04502 0.87 -0.2 4,710,774 - MPMX20_04502 0.87 -0.6 4,710,774 - MPMX20_04502 0.87 +0.1 4,710,774 - MPMX20_04502 0.87 -2.3 4,710,774 - MPMX20_04502 0.87 -2.0 4,710,774 - MPMX20_04502 0.87 +0.1 4,710,774 - MPMX20_04502 0.87 +0.5 4,710,774 - MPMX20_04502 0.87 +0.4 4,710,774 - MPMX20_04502 0.87 -0.2 4,710,774 - MPMX20_04502 0.87 +4.3 4,710,814 + MPMX20_04502 0.90 +0.8 4,710,814 + MPMX20_04502 0.90 -1.0 4,710,849 - +0.3 4,710,920 + +0.3 4,710,928 - -3.9 4,710,960 + +1.3 4,710,966 - +0.7 4,711,074 + +0.9 4,711,409 - +0.4 4,711,442 - -0.5 4,711,575 + +2.0 4,711,632 - +0.2 4,711,644 - -1.3 4,711,646 + -0.7 4,711,661 + +2.5 4,711,728 + MPMX20_04503 0.11 +0.1 4,711,736 - MPMX20_04503 0.12 +0.7 4,711,770 + MPMX20_04503 0.14 +0.1 4,711,842 - MPMX20_04503 0.19 -0.1 4,711,852 - MPMX20_04503 0.19 +0.4 4,711,925 + MPMX20_04503 0.24 +1.5 4,712,048 - MPMX20_04503 0.32 -1.1 4,712,064 + MPMX20_04503 0.33 +0.7 4,712,188 + MPMX20_04503 0.41 +0.6 4,712,202 - MPMX20_04503 0.42 +1.3 4,712,276 + MPMX20_04503 0.47 +0.4 4,712,291 - MPMX20_04503 0.48 +1.4 4,712,320 - MPMX20_04503 0.50 +2.0 4,712,364 + MPMX20_04503 0.53 -2.6 4,712,372 - MPMX20_04503 0.53 -0.2 4,712,377 + MPMX20_04503 0.54 +0.9 4,712,377 - MPMX20_04503 0.54 -0.4 4,712,413 - MPMX20_04503 0.56 +2.9 4,712,413 - MPMX20_04503 0.56 -0.3 4,712,505 - MPMX20_04503 0.62 +1.3 4,712,509 - MPMX20_04503 0.62 -0.1 4,712,578 - MPMX20_04503 0.67 -2.0 4,712,593 + MPMX20_04503 0.68 +0.7 4,712,593 + MPMX20_04503 0.68 +0.8 4,712,594 + MPMX20_04503 0.68 +2.0 4,712,638 + MPMX20_04503 0.71 -0.3 4,712,638 + MPMX20_04503 0.71 -0.6 4,712,648 - MPMX20_04503 0.72 +0.5 4,712,659 + MPMX20_04503 0.72 -0.7 4,712,659 + MPMX20_04503 0.72 +0.8 4,712,714 + MPMX20_04503 0.76 -0.4 4,712,725 + MPMX20_04503 0.77 +0.4 4,712,733 - MPMX20_04503 0.77 -0.1 4,712,739 + MPMX20_04503 0.78 +1.2 4,712,786 + MPMX20_04503 0.81 +3.4 4,712,794 - MPMX20_04503 0.81 +0.8 4,712,810 + MPMX20_04503 0.82 +0.8 4,712,896 + MPMX20_04503 0.88 -1.4 4,712,925 - MPMX20_04503 0.90 -0.3 4,712,925 - MPMX20_04503 0.90 +0.9 4,712,925 - MPMX20_04503 0.90 -0.1 4,713,131 + +1.0 4,713,132 - -0.5 4,713,132 - +1.7 4,713,139 + -0.3 4,713,139 + +0.6 4,713,139 - -0.3 4,713,195 - MPMX20_04504 0.26 -1.3 4,713,195 - MPMX20_04504 0.26 +1.6 4,713,226 + MPMX20_04504 0.35 +1.4 4,713,226 + MPMX20_04504 0.35 +2.4 4,713,266 - MPMX20_04504 0.47 +1.9 4,713,298 + MPMX20_04504 0.56 +3.9 4,713,298 + MPMX20_04504 0.56 +2.6 4,713,306 - MPMX20_04504 0.58 -0.7 4,713,331 + MPMX20_04504 0.66 +0.0 4,713,428 + +1.9 4,713,445 + +0.6 4,713,453 - +3.3 4,713,453 - +1.1 4,713,462 - -0.0 4,713,491 + +0.8 4,713,497 - +3.5 4,713,512 + +3.5 4,713,635 + +2.0 4,713,643 - +1.6 4,713,643 - +1.1 4,713,725 + MPMX20_04505 0.19 +3.6 4,713,733 - MPMX20_04505 0.20 +1.2 4,713,733 - MPMX20_04505 0.20 +2.8 4,713,759 + MPMX20_04505 0.24 +2.0 4,713,790 - MPMX20_04505 0.27 +1.6 4,713,800 + MPMX20_04505 0.29 +2.1 4,713,818 + MPMX20_04505 0.31 +2.9 4,713,824 - MPMX20_04505 0.32 +2.3 4,713,826 - MPMX20_04505 0.32 +3.5 4,713,826 - MPMX20_04505 0.32 +2.0 4,713,826 - MPMX20_04505 0.32 +2.2 4,713,847 - MPMX20_04505 0.34 +2.0 4,713,894 + MPMX20_04505 0.40 +0.1 4,713,894 + MPMX20_04505 0.40 -0.3 4,713,894 + MPMX20_04505 0.40 +1.3 4,713,894 + MPMX20_04505 0.40 +2.0 4,713,894 + MPMX20_04505 0.40 +1.6 4,713,894 + MPMX20_04505 0.40 +1.5 4,713,894 + MPMX20_04505 0.40 +3.7 4,713,894 + MPMX20_04505 0.40 +2.0 4,713,902 - MPMX20_04505 0.41 +2.1 4,713,902 - MPMX20_04505 0.41 +1.5 4,713,902 - MPMX20_04505 0.41 +1.1 4,713,902 - MPMX20_04505 0.41 +1.5 4,713,902 - MPMX20_04505 0.41 -0.7 4,713,998 - MPMX20_04505 0.53 +1.8 4,714,044 + MPMX20_04505 0.58 +1.0 4,714,044 + MPMX20_04505 0.58 +0.7
Or see this region's nucleotide sequence