Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03833

Experiment: TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03832 and MPMX20_03833 are separated by 255 nucleotidesMPMX20_03833 and MPMX20_03834 are separated by 95 nucleotidesMPMX20_03834 and MPMX20_03835 are separated by 361 nucleotides MPMX20_03832: MPMX20_03832 - Constitutive ornithine decarboxylase, at 4,034,289 to 4,036,424 _03832 MPMX20_03833: MPMX20_03833 - putative membrane protein YdfK, at 4,036,680 to 4,037,393 _03833 MPMX20_03834: MPMX20_03834 - tRNA-Phe, at 4,037,489 to 4,037,564 _03834 MPMX20_03835: MPMX20_03835 - hypothetical protein, at 4,037,926 to 4,038,231 _03835 Position (kb) 4036 4037 4038Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4035.753 kb on - strand, within MPMX20_03832at 4035.758 kb on - strand, within MPMX20_03832at 4035.797 kb on + strand, within MPMX20_03832at 4035.805 kb on - strand, within MPMX20_03832at 4035.813 kb on + strand, within MPMX20_03832at 4035.852 kb on + strand, within MPMX20_03832at 4035.868 kb on + strand, within MPMX20_03832at 4035.876 kb on - strand, within MPMX20_03832at 4035.906 kb on + strand, within MPMX20_03832at 4035.924 kb on - strand, within MPMX20_03832at 4035.936 kb on + strand, within MPMX20_03832at 4035.964 kb on + strand, within MPMX20_03832at 4035.964 kb on + strand, within MPMX20_03832at 4035.964 kb on + strand, within MPMX20_03832at 4035.964 kb on + strand, within MPMX20_03832at 4035.972 kb on - strand, within MPMX20_03832at 4036.058 kb on + strand, within MPMX20_03832at 4036.068 kb on + strand, within MPMX20_03832at 4036.073 kb on + strand, within MPMX20_03832at 4036.076 kb on - strand, within MPMX20_03832at 4036.078 kb on + strand, within MPMX20_03832at 4036.100 kb on + strand, within MPMX20_03832at 4036.100 kb on + strand, within MPMX20_03832at 4036.108 kb on - strand, within MPMX20_03832at 4036.108 kb on - strand, within MPMX20_03832at 4036.173 kb on + strand, within MPMX20_03832at 4036.188 kb on - strand, within MPMX20_03832at 4036.267 kb on + strandat 4036.275 kb on - strandat 4036.311 kb on + strandat 4036.319 kb on - strandat 4036.347 kb on + strandat 4036.379 kb on - strandat 4036.381 kb on + strandat 4036.381 kb on + strandat 4036.381 kb on + strandat 4036.381 kb on + strandat 4036.381 kb on + strandat 4036.389 kb on - strandat 4036.389 kb on - strandat 4036.389 kb on - strandat 4036.389 kb on - strandat 4036.389 kb on - strandat 4036.391 kb on + strandat 4036.399 kb on - strandat 4036.438 kb on - strandat 4036.455 kb on - strandat 4036.465 kb on - strandat 4036.503 kb on - strandat 4036.521 kb on + strandat 4036.524 kb on + strandat 4036.553 kb on + strandat 4036.568 kb on - strandat 4036.574 kb on - strandat 4036.594 kb on + strandat 4036.594 kb on + strandat 4036.594 kb on + strandat 4036.594 kb on + strandat 4036.594 kb on + strandat 4036.594 kb on + strandat 4036.602 kb on - strandat 4036.602 kb on - strandat 4036.602 kb on - strandat 4036.604 kb on + strandat 4036.609 kb on + strandat 4036.609 kb on + strandat 4036.612 kb on - strandat 4036.616 kb on + strandat 4036.617 kb on - strandat 4036.626 kb on + strandat 4036.626 kb on + strandat 4036.632 kb on - strandat 4036.634 kb on - strandat 4036.634 kb on - strandat 4036.634 kb on - strandat 4036.664 kb on - strandat 4036.671 kb on - strandat 4036.671 kb on - strandat 4036.671 kb on - strandat 4036.693 kb on - strandat 4036.784 kb on - strand, within MPMX20_03833at 4036.784 kb on - strand, within MPMX20_03833at 4036.794 kb on + strand, within MPMX20_03833at 4036.861 kb on + strand, within MPMX20_03833at 4036.861 kb on + strand, within MPMX20_03833at 4036.869 kb on - strand, within MPMX20_03833at 4036.869 kb on - strand, within MPMX20_03833at 4036.874 kb on - strand, within MPMX20_03833at 4036.919 kb on - strand, within MPMX20_03833at 4036.997 kb on + strand, within MPMX20_03833at 4037.005 kb on - strand, within MPMX20_03833at 4037.055 kb on + strand, within MPMX20_03833at 4037.086 kb on - strand, within MPMX20_03833at 4037.170 kb on + strand, within MPMX20_03833at 4037.206 kb on + strand, within MPMX20_03833at 4037.206 kb on + strand, within MPMX20_03833at 4037.211 kb on + strand, within MPMX20_03833at 4037.216 kb on + strand, within MPMX20_03833at 4037.219 kb on - strand, within MPMX20_03833at 4037.220 kb on - strand, within MPMX20_03833at 4037.284 kb on + strand, within MPMX20_03833at 4037.393 kb on + strandat 4037.408 kb on + strandat 4037.425 kb on - strandat 4037.456 kb on + strandat 4037.464 kb on - strandat 4037.640 kb on + strandat 4037.642 kb on + strandat 4037.700 kb on - strandat 4037.731 kb on - strandat 4037.752 kb on - strandat 4037.762 kb on - strandat 4037.764 kb on - strandat 4037.766 kb on + strandat 4037.766 kb on + strandat 4037.766 kb on + strandat 4037.766 kb on + strandat 4037.766 kb on + strandat 4037.769 kb on - strandat 4037.802 kb on - strandat 4037.802 kb on - strandat 4037.845 kb on + strandat 4037.850 kb on + strandat 4037.858 kb on - strandat 4037.870 kb on - strandat 4037.870 kb on - strandat 4037.873 kb on + strandat 4037.873 kb on + strandat 4037.956 kb on + strandat 4037.956 kb on + strandat 4037.969 kb on + strand, within MPMX20_03835at 4037.976 kb on + strand, within MPMX20_03835at 4037.996 kb on + strand, within MPMX20_03835at 4037.996 kb on + strand, within MPMX20_03835at 4037.996 kb on + strand, within MPMX20_03835at 4037.996 kb on + strand, within MPMX20_03835at 4038.002 kb on + strand, within MPMX20_03835at 4038.004 kb on - strand, within MPMX20_03835at 4038.004 kb on - strand, within MPMX20_03835at 4038.004 kb on - strand, within MPMX20_03835at 4038.055 kb on + strand, within MPMX20_03835at 4038.113 kb on + strand, within MPMX20_03835at 4038.120 kb on - strand, within MPMX20_03835at 4038.140 kb on + strand, within MPMX20_03835at 4038.140 kb on + strand, within MPMX20_03835at 4038.158 kb on + strand, within MPMX20_03835at 4038.164 kb on + strand, within MPMX20_03835at 4038.166 kb on - strand, within MPMX20_03835at 4038.169 kb on + strand, within MPMX20_03835at 4038.169 kb on + strand, within MPMX20_03835at 4038.169 kb on + strand, within MPMX20_03835at 4038.169 kb on + strand, within MPMX20_03835at 4038.177 kb on - strand, within MPMX20_03835at 4038.177 kb on - strand, within MPMX20_03835at 4038.177 kb on - strand, within MPMX20_03835at 4038.177 kb on - strand, within MPMX20_03835at 4038.258 kb on + strandat 4038.266 kb on - strandat 4038.287 kb on - strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.345 kb on + strandat 4038.352 kb on + strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.353 kb on - strandat 4038.358 kb on + strandat 4038.358 kb on - strandat 4038.358 kb on - strandat 4038.358 kb on - strandat 4038.360 kb on - strandat 4038.366 kb on + strandat 4038.366 kb on + strandat 4038.367 kb on - strandat 4038.367 kb on - strandat 4038.371 kb on + strandat 4038.381 kb on - strandat 4038.387 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,035,753 - MPMX20_03832 0.69 +0.2
4,035,758 - MPMX20_03832 0.69 +0.6
4,035,797 + MPMX20_03832 0.71 +3.6
4,035,805 - MPMX20_03832 0.71 +1.4
4,035,813 + MPMX20_03832 0.71 +0.4
4,035,852 + MPMX20_03832 0.73 +0.2
4,035,868 + MPMX20_03832 0.74 +0.5
4,035,876 - MPMX20_03832 0.74 +0.2
4,035,906 + MPMX20_03832 0.76 +0.4
4,035,924 - MPMX20_03832 0.77 -0.9
4,035,936 + MPMX20_03832 0.77 +2.0
4,035,964 + MPMX20_03832 0.78 -1.0
4,035,964 + MPMX20_03832 0.78 -1.4
4,035,964 + MPMX20_03832 0.78 +0.6
4,035,964 + MPMX20_03832 0.78 -0.2
4,035,972 - MPMX20_03832 0.79 -2.0
4,036,058 + MPMX20_03832 0.83 -1.6
4,036,068 + MPMX20_03832 0.83 +0.4
4,036,073 + MPMX20_03832 0.84 +2.3
4,036,076 - MPMX20_03832 0.84 -0.4
4,036,078 + MPMX20_03832 0.84 +0.7
4,036,100 + MPMX20_03832 0.85 -0.1
4,036,100 + MPMX20_03832 0.85 +1.1
4,036,108 - MPMX20_03832 0.85 -2.0
4,036,108 - MPMX20_03832 0.85 +1.0
4,036,173 + MPMX20_03832 0.88 -2.1
4,036,188 - MPMX20_03832 0.89 +3.1
4,036,267 + +0.8
4,036,275 - +0.4
4,036,311 + -1.7
4,036,319 - +0.4
4,036,347 + -1.7
4,036,379 - +1.5
4,036,381 + -1.8
4,036,381 + +2.2
4,036,381 + -0.1
4,036,381 + +3.0
4,036,381 + +4.0
4,036,389 - +0.9
4,036,389 - +0.4
4,036,389 - -1.2
4,036,389 - +0.4
4,036,389 - -1.7
4,036,391 + +0.6
4,036,399 - +1.5
4,036,438 - +1.4
4,036,455 - +0.1
4,036,465 - -0.1
4,036,503 - -0.8
4,036,521 + -0.6
4,036,524 + +0.1
4,036,553 + -0.3
4,036,568 - +1.3
4,036,574 - -0.2
4,036,594 + -1.5
4,036,594 + +0.4
4,036,594 + +0.5
4,036,594 + +0.2
4,036,594 + +1.4
4,036,594 + +0.4
4,036,602 - +0.7
4,036,602 - -0.9
4,036,602 - +0.0
4,036,604 + -0.5
4,036,609 + +0.1
4,036,609 + +2.5
4,036,612 - +0.0
4,036,616 + +1.0
4,036,617 - -0.4
4,036,626 + -2.0
4,036,626 + -0.1
4,036,632 - +1.3
4,036,634 - +0.1
4,036,634 - -0.1
4,036,634 - -0.9
4,036,664 - +1.2
4,036,671 - +0.2
4,036,671 - -0.3
4,036,671 - -0.8
4,036,693 - +0.8
4,036,784 - MPMX20_03833 0.15 +1.0
4,036,784 - MPMX20_03833 0.15 -0.1
4,036,794 + MPMX20_03833 0.16 -1.7
4,036,861 + MPMX20_03833 0.25 -0.8
4,036,861 + MPMX20_03833 0.25 -0.4
4,036,869 - MPMX20_03833 0.26 -0.8
4,036,869 - MPMX20_03833 0.26 -0.8
4,036,874 - MPMX20_03833 0.27 -0.9
4,036,919 - MPMX20_03833 0.33 -0.7
4,036,997 + MPMX20_03833 0.44 -1.0
4,037,005 - MPMX20_03833 0.46 +1.0
4,037,055 + MPMX20_03833 0.53 -2.6
4,037,086 - MPMX20_03833 0.57 -1.1
4,037,170 + MPMX20_03833 0.69 -0.2
4,037,206 + MPMX20_03833 0.74 -0.1
4,037,206 + MPMX20_03833 0.74 -0.3
4,037,211 + MPMX20_03833 0.74 -1.9
4,037,216 + MPMX20_03833 0.75 -0.7
4,037,219 - MPMX20_03833 0.75 -2.6
4,037,220 - MPMX20_03833 0.76 -0.2
4,037,284 + MPMX20_03833 0.85 -0.8
4,037,393 + -0.2
4,037,408 + +2.0
4,037,425 - +0.8
4,037,456 + -0.9
4,037,464 - -0.6
4,037,640 + -1.7
4,037,642 + -0.6
4,037,700 - +0.4
4,037,731 - -1.0
4,037,752 - +1.4
4,037,762 - -0.7
4,037,764 - -0.6
4,037,766 + +1.0
4,037,766 + +1.4
4,037,766 + +1.0
4,037,766 + -0.9
4,037,766 + -0.6
4,037,769 - -1.1
4,037,802 - +0.3
4,037,802 - +1.0
4,037,845 + -0.2
4,037,850 + -0.1
4,037,858 - +0.0
4,037,870 - -0.4
4,037,870 - +2.0
4,037,873 + +0.2
4,037,873 + -1.5
4,037,956 + +2.8
4,037,956 + -0.1
4,037,969 + MPMX20_03835 0.14 +1.0
4,037,976 + MPMX20_03835 0.16 -0.6
4,037,996 + MPMX20_03835 0.23 -0.6
4,037,996 + MPMX20_03835 0.23 -0.4
4,037,996 + MPMX20_03835 0.23 -0.2
4,037,996 + MPMX20_03835 0.23 +0.1
4,038,002 + MPMX20_03835 0.25 -0.6
4,038,004 - MPMX20_03835 0.25 -3.4
4,038,004 - MPMX20_03835 0.25 -2.4
4,038,004 - MPMX20_03835 0.25 +0.7
4,038,055 + MPMX20_03835 0.42 +0.6
4,038,113 + MPMX20_03835 0.61 -0.6
4,038,120 - MPMX20_03835 0.63 -1.5
4,038,140 + MPMX20_03835 0.70 +0.4
4,038,140 + MPMX20_03835 0.70 -3.2
4,038,158 + MPMX20_03835 0.76 -0.4
4,038,164 + MPMX20_03835 0.78 +0.5
4,038,166 - MPMX20_03835 0.78 +1.3
4,038,169 + MPMX20_03835 0.79 -0.6
4,038,169 + MPMX20_03835 0.79 +0.0
4,038,169 + MPMX20_03835 0.79 -0.7
4,038,169 + MPMX20_03835 0.79 +0.3
4,038,177 - MPMX20_03835 0.82 +0.0
4,038,177 - MPMX20_03835 0.82 +0.2
4,038,177 - MPMX20_03835 0.82 +1.2
4,038,177 - MPMX20_03835 0.82 -0.6
4,038,258 + +0.8
4,038,266 - +0.0
4,038,287 - +1.0
4,038,345 + +0.0
4,038,345 + +1.0
4,038,345 + +1.4
4,038,345 + -1.1
4,038,345 + -1.9
4,038,345 + +4.2
4,038,345 + +2.0
4,038,345 + -1.2
4,038,345 + -1.3
4,038,345 + +2.0
4,038,345 + +1.4
4,038,345 + +0.4
4,038,345 + +0.4
4,038,345 + +0.0
4,038,345 + +0.4
4,038,345 + +1.3
4,038,345 + -0.9
4,038,345 + +0.4
4,038,345 + -0.8
4,038,345 + +1.0
4,038,352 + +2.0
4,038,353 - +0.2
4,038,353 - +0.6
4,038,353 - +0.7
4,038,353 - -0.1
4,038,353 - +0.2
4,038,353 - +1.8
4,038,353 - -1.9
4,038,353 - -0.9
4,038,353 - -0.9
4,038,353 - +0.6
4,038,353 - +3.6
4,038,353 - +1.0
4,038,353 - -0.7
4,038,353 - -0.7
4,038,353 - +2.6
4,038,353 - -1.7
4,038,353 - -0.2
4,038,353 - -0.8
4,038,353 - -0.0
4,038,353 - +0.4
4,038,353 - +1.0
4,038,353 - -0.6
4,038,353 - -1.7
4,038,353 - -2.7
4,038,353 - +0.0
4,038,353 - +0.7
4,038,353 - +4.1
4,038,353 - +0.6
4,038,353 - -0.8
4,038,353 - -0.3
4,038,353 - +0.4
4,038,353 - -3.1
4,038,353 - +0.4
4,038,353 - -0.1
4,038,353 - +2.0
4,038,353 - -0.3
4,038,353 - -0.1
4,038,353 - +0.0
4,038,353 - +0.1
4,038,353 - +0.6
4,038,353 - +0.1
4,038,353 - +0.3
4,038,353 - +0.5
4,038,353 - +1.0
4,038,353 - -0.3
4,038,353 - +0.0
4,038,353 - -0.1
4,038,353 - +0.8
4,038,353 - -1.9
4,038,353 - +0.6
4,038,353 - +0.6
4,038,353 - +0.4
4,038,353 - -2.9
4,038,353 - +1.4
4,038,353 - -0.6
4,038,353 - +0.4
4,038,353 - +0.9
4,038,353 - -0.6
4,038,353 - +1.0
4,038,353 - +0.4
4,038,353 - -1.4
4,038,353 - +0.8
4,038,353 - -1.4
4,038,353 - +0.4
4,038,353 - -0.9
4,038,353 - -1.3
4,038,353 - +0.8
4,038,353 - +0.3
4,038,353 - +1.9
4,038,353 - -0.4
4,038,353 - -1.0
4,038,353 - +0.0
4,038,353 - -0.6
4,038,353 - -0.6
4,038,353 - +0.4
4,038,353 - -0.1
4,038,353 - +0.6
4,038,353 - -1.1
4,038,353 - +1.0
4,038,353 - -0.1
4,038,353 - -0.9
4,038,353 - +3.0
4,038,353 - +1.3
4,038,353 - -0.4
4,038,353 - -0.2
4,038,353 - +0.7
4,038,353 - +0.7
4,038,358 + +0.4
4,038,358 - -1.6
4,038,358 - -0.6
4,038,358 - +0.9
4,038,360 - +0.7
4,038,366 + +0.8
4,038,366 + +2.0
4,038,367 - -1.3
4,038,367 - +1.6
4,038,371 + +1.3
4,038,381 - +2.3
4,038,387 - +1.0

Or see this region's nucleotide sequence