Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03676

Experiment: TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03674 and MPMX20_03675 overlap by 10 nucleotidesMPMX20_03675 and MPMX20_03676 are separated by 76 nucleotidesMPMX20_03676 and MPMX20_03677 are separated by 209 nucleotidesMPMX20_03677 and MPMX20_03678 are separated by 44 nucleotidesMPMX20_03678 and MPMX20_03679 are separated by 44 nucleotidesMPMX20_03679 and MPMX20_03680 are separated by 88 nucleotides MPMX20_03674: MPMX20_03674 - Sulfur acceptor protein CsdE, at 3,869,142 to 3,869,588 _03674 MPMX20_03675: MPMX20_03675 - tRNA threonylcarbamoyladenosine dehydratase, at 3,869,579 to 3,870,385 _03675 MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559 _03676 MPMX20_03677: MPMX20_03677 - tRNA-Met, at 3,871,769 to 3,871,845 _03677 MPMX20_03678: MPMX20_03678 - tRNA-Met, at 3,871,890 to 3,871,966 _03678 MPMX20_03679: MPMX20_03679 - tRNA-Met, at 3,872,011 to 3,872,087 _03679 MPMX20_03680: MPMX20_03680 - N-acetylmuramoyl-L-alanine amidase AmiC, at 3,872,176 to 3,873,429 _03680 Position (kb) 3870 3871 3872Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3869.510 kb on + strand, within MPMX20_03674at 3869.510 kb on + strand, within MPMX20_03674at 3869.527 kb on + strand, within MPMX20_03674at 3869.564 kb on - strandat 3869.595 kb on + strandat 3869.941 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.035 kb on - strand, within MPMX20_03675at 3870.076 kb on - strand, within MPMX20_03675at 3870.129 kb on + strand, within MPMX20_03675at 3870.147 kb on - strand, within MPMX20_03675at 3870.157 kb on + strand, within MPMX20_03675at 3870.157 kb on + strand, within MPMX20_03675at 3870.260 kb on - strand, within MPMX20_03675at 3870.287 kb on + strand, within MPMX20_03675at 3870.339 kb on - strandat 3870.376 kb on - strandat 3870.391 kb on - strandat 3870.405 kb on - strandat 3870.441 kb on + strandat 3870.446 kb on + strandat 3870.499 kb on - strandat 3870.504 kb on - strandat 3870.524 kb on + strandat 3870.532 kb on - strandat 3870.597 kb on - strand, within MPMX20_03676at 3870.597 kb on - strand, within MPMX20_03676at 3870.663 kb on + strand, within MPMX20_03676at 3870.679 kb on + strand, within MPMX20_03676at 3870.717 kb on + strand, within MPMX20_03676at 3870.773 kb on + strand, within MPMX20_03676at 3870.831 kb on + strand, within MPMX20_03676at 3870.848 kb on + strand, within MPMX20_03676at 3870.920 kb on - strand, within MPMX20_03676at 3870.939 kb on + strand, within MPMX20_03676at 3870.972 kb on + strand, within MPMX20_03676at 3870.980 kb on - strand, within MPMX20_03676at 3870.980 kb on - strand, within MPMX20_03676at 3871.011 kb on + strand, within MPMX20_03676at 3871.019 kb on - strand, within MPMX20_03676at 3871.079 kb on + strand, within MPMX20_03676at 3871.117 kb on - strand, within MPMX20_03676at 3871.176 kb on + strand, within MPMX20_03676at 3871.277 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.401 kb on - strand, within MPMX20_03676at 3871.414 kb on + strand, within MPMX20_03676at 3871.441 kb on + strand, within MPMX20_03676at 3871.467 kb on - strandat 3871.487 kb on + strandat 3871.495 kb on - strandat 3871.495 kb on - strandat 3871.539 kb on - strandat 3871.640 kb on - strandat 3871.703 kb on + strandat 3871.943 kb on + strand, within MPMX20_03678at 3872.140 kb on + strandat 3872.156 kb on + strandat 3872.178 kb on + strandat 3872.181 kb on - strandat 3872.183 kb on + strandat 3872.186 kb on - strandat 3872.186 kb on - strandat 3872.283 kb on + strandat 3872.293 kb on - strandat 3872.317 kb on - strand, within MPMX20_03680at 3872.341 kb on + strand, within MPMX20_03680at 3872.347 kb on - strand, within MPMX20_03680at 3872.349 kb on + strand, within MPMX20_03680at 3872.372 kb on - strand, within MPMX20_03680at 3872.372 kb on - strand, within MPMX20_03680at 3872.394 kb on - strand, within MPMX20_03680at 3872.427 kb on + strand, within MPMX20_03680at 3872.441 kb on + strand, within MPMX20_03680at 3872.506 kb on - strand, within MPMX20_03680at 3872.520 kb on + strand, within MPMX20_03680at 3872.520 kb on + strand, within MPMX20_03680at 3872.520 kb on + strand, within MPMX20_03680at 3872.528 kb on - strand, within MPMX20_03680at 3872.528 kb on - strand, within MPMX20_03680at 3872.528 kb on - strand, within MPMX20_03680

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,869,510 + MPMX20_03674 0.82 -0.7
3,869,510 + MPMX20_03674 0.82 +3.5
3,869,527 + MPMX20_03674 0.86 +0.1
3,869,564 - -0.3
3,869,595 + -0.9
3,869,941 + MPMX20_03675 0.45 +2.0
3,870,017 + MPMX20_03675 0.54 -1.7
3,870,017 + MPMX20_03675 0.54 -1.6
3,870,017 + MPMX20_03675 0.54 -1.0
3,870,035 - MPMX20_03675 0.57 -1.4
3,870,076 - MPMX20_03675 0.62 +0.7
3,870,129 + MPMX20_03675 0.68 -0.5
3,870,147 - MPMX20_03675 0.70 +2.4
3,870,157 + MPMX20_03675 0.72 -0.4
3,870,157 + MPMX20_03675 0.72 +0.6
3,870,260 - MPMX20_03675 0.84 +5.1
3,870,287 + MPMX20_03675 0.88 +1.0
3,870,339 - +0.6
3,870,376 - -0.2
3,870,391 - -0.1
3,870,405 - -0.4
3,870,441 + -0.1
3,870,446 + +0.0
3,870,499 - -0.4
3,870,504 - -0.7
3,870,524 + +1.0
3,870,532 - +1.2
3,870,597 - MPMX20_03676 0.12 -0.6
3,870,597 - MPMX20_03676 0.12 +2.4
3,870,663 + MPMX20_03676 0.18 +0.0
3,870,679 + MPMX20_03676 0.20 -0.3
3,870,717 + MPMX20_03676 0.23 +0.4
3,870,773 + MPMX20_03676 0.28 -0.6
3,870,831 + MPMX20_03676 0.34 +1.3
3,870,848 + MPMX20_03676 0.35 +8.0
3,870,920 - MPMX20_03676 0.42 +0.4
3,870,939 + MPMX20_03676 0.43 +0.0
3,870,972 + MPMX20_03676 0.46 +0.0
3,870,980 - MPMX20_03676 0.47 -0.5
3,870,980 - MPMX20_03676 0.47 +0.4
3,871,011 + MPMX20_03676 0.50 -0.5
3,871,019 - MPMX20_03676 0.51 +1.0
3,871,079 + MPMX20_03676 0.56 -0.3
3,871,117 - MPMX20_03676 0.60 +0.0
3,871,176 + MPMX20_03676 0.65 -0.3
3,871,277 + MPMX20_03676 0.74 +0.0
3,871,302 + MPMX20_03676 0.77 +1.5
3,871,302 + MPMX20_03676 0.77 -1.8
3,871,302 + MPMX20_03676 0.77 +0.0
3,871,310 - MPMX20_03676 0.77 +0.4
3,871,310 - MPMX20_03676 0.77 -0.0
3,871,310 - MPMX20_03676 0.77 +0.3
3,871,310 - MPMX20_03676 0.77 -0.1
3,871,401 - MPMX20_03676 0.86 +0.1
3,871,414 + MPMX20_03676 0.87 -0.7
3,871,441 + MPMX20_03676 0.89 +0.3
3,871,467 - -0.2
3,871,487 + -1.2
3,871,495 - -0.4
3,871,495 - +1.0
3,871,539 - -0.0
3,871,640 - -2.0
3,871,703 + -1.4
3,871,943 + MPMX20_03678 0.69 -1.2
3,872,140 + +3.0
3,872,156 + +2.6
3,872,178 + +7.1
3,872,181 - +0.3
3,872,183 + -0.4
3,872,186 - +0.8
3,872,186 - +1.3
3,872,283 + +0.3
3,872,293 - +0.0
3,872,317 - MPMX20_03680 0.11 -0.8
3,872,341 + MPMX20_03680 0.13 -0.6
3,872,347 - MPMX20_03680 0.14 +0.7
3,872,349 + MPMX20_03680 0.14 -1.0
3,872,372 - MPMX20_03680 0.16 +0.0
3,872,372 - MPMX20_03680 0.16 -0.5
3,872,394 - MPMX20_03680 0.17 -3.2
3,872,427 + MPMX20_03680 0.20 -1.0
3,872,441 + MPMX20_03680 0.21 +0.7
3,872,506 - MPMX20_03680 0.26 +0.0
3,872,520 + MPMX20_03680 0.27 +0.4
3,872,520 + MPMX20_03680 0.27 -0.1
3,872,520 + MPMX20_03680 0.27 -2.1
3,872,528 - MPMX20_03680 0.28 +0.3
3,872,528 - MPMX20_03680 0.28 +3.0
3,872,528 - MPMX20_03680 0.28 -0.2

Or see this region's nucleotide sequence