Experiment: TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03064 and MPMX20_03065 overlap by 4 nucleotides MPMX20_03065 and MPMX20_03066 are separated by 135 nucleotides MPMX20_03066 and MPMX20_03067 are separated by 154 nucleotides
MPMX20_03064: MPMX20_03064 - Signal transduction histidine-protein kinase BaeS, at 3,213,496 to 3,214,899
_03064
MPMX20_03065: MPMX20_03065 - Transcriptional regulatory protein BaeR, at 3,214,896 to 3,215,618
_03065
MPMX20_03066: MPMX20_03066 - hypothetical protein, at 3,215,754 to 3,216,086
_03066
MPMX20_03067: MPMX20_03067 - 23S rRNA 5-hydroxycytidine synthase, at 3,216,241 to 3,217,602
_03067
Position (kb)
3215
3216
3217 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 3214.827 kb on + strand at 3214.850 kb on + strand at 3214.892 kb on + strand at 3215.002 kb on + strand, within MPMX20_03065 at 3215.010 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.129 kb on + strand, within MPMX20_03065 at 3215.208 kb on + strand, within MPMX20_03065 at 3215.214 kb on - strand, within MPMX20_03065 at 3215.228 kb on + strand, within MPMX20_03065 at 3215.275 kb on + strand, within MPMX20_03065 at 3215.287 kb on + strand, within MPMX20_03065 at 3215.429 kb on + strand, within MPMX20_03065 at 3215.440 kb on - strand, within MPMX20_03065 at 3215.448 kb on + strand, within MPMX20_03065 at 3215.456 kb on - strand, within MPMX20_03065 at 3215.456 kb on - strand, within MPMX20_03065 at 3215.462 kb on + strand, within MPMX20_03065 at 3215.482 kb on + strand, within MPMX20_03065 at 3215.537 kb on + strand, within MPMX20_03065 at 3215.568 kb on + strand at 3215.568 kb on + strand at 3215.576 kb on - strand at 3215.576 kb on - strand at 3215.603 kb on + strand at 3215.611 kb on - strand at 3215.627 kb on - strand at 3215.677 kb on + strand at 3215.795 kb on + strand, within MPMX20_03066 at 3215.795 kb on + strand, within MPMX20_03066 at 3215.803 kb on - strand, within MPMX20_03066 at 3215.808 kb on - strand, within MPMX20_03066 at 3215.822 kb on - strand, within MPMX20_03066 at 3215.832 kb on + strand, within MPMX20_03066 at 3215.832 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.854 kb on - strand, within MPMX20_03066 at 3215.854 kb on - strand, within MPMX20_03066 at 3215.854 kb on - strand, within MPMX20_03066 at 3215.932 kb on - strand, within MPMX20_03066 at 3215.994 kb on + strand, within MPMX20_03066 at 3215.999 kb on + strand, within MPMX20_03066 at 3216.007 kb on + strand, within MPMX20_03066 at 3216.007 kb on + strand, within MPMX20_03066 at 3216.007 kb on - strand, within MPMX20_03066 at 3216.023 kb on + strand, within MPMX20_03066 at 3216.041 kb on + strand, within MPMX20_03066 at 3216.041 kb on + strand, within MPMX20_03066 at 3216.067 kb on + strand at 3216.075 kb on + strand at 3216.077 kb on - strand at 3216.102 kb on - strand at 3216.112 kb on - strand at 3216.126 kb on + strand at 3216.163 kb on + strand at 3216.171 kb on - strand at 3216.210 kb on + strand at 3216.210 kb on + strand at 3216.217 kb on + strand at 3216.218 kb on - strand at 3216.218 kb on - strand at 3216.218 kb on - strand at 3216.251 kb on - strand at 3216.403 kb on + strand, within MPMX20_03067 at 3216.404 kb on + strand, within MPMX20_03067 at 3216.411 kb on - strand, within MPMX20_03067 at 3216.412 kb on - strand, within MPMX20_03067 at 3216.440 kb on + strand, within MPMX20_03067 at 3216.441 kb on - strand, within MPMX20_03067 at 3216.594 kb on + strand, within MPMX20_03067 at 3216.602 kb on - strand, within MPMX20_03067 at 3216.634 kb on + strand, within MPMX20_03067 at 3216.640 kb on + strand, within MPMX20_03067 at 3216.640 kb on + strand, within MPMX20_03067 at 3216.640 kb on + strand, within MPMX20_03067 at 3216.640 kb on + strand, within MPMX20_03067 at 3216.648 kb on - strand, within MPMX20_03067 at 3216.655 kb on + strand, within MPMX20_03067 at 3216.747 kb on + strand, within MPMX20_03067 at 3216.747 kb on + strand, within MPMX20_03067 at 3216.747 kb on + strand, within MPMX20_03067 at 3216.747 kb on + strand, within MPMX20_03067 at 3216.747 kb on + strand, within MPMX20_03067 at 3216.747 kb on + strand, within MPMX20_03067 at 3216.747 kb on + strand, within MPMX20_03067 at 3216.753 kb on + strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.755 kb on - strand, within MPMX20_03067 at 3216.761 kb on - strand, within MPMX20_03067 at 3216.761 kb on - strand, within MPMX20_03067 at 3216.766 kb on - strand, within MPMX20_03067 at 3216.805 kb on + strand, within MPMX20_03067 at 3216.941 kb on + strand, within MPMX20_03067 at 3216.987 kb on - strand, within MPMX20_03067 at 3217.037 kb on + strand, within MPMX20_03067 at 3217.037 kb on + strand, within MPMX20_03067 at 3217.045 kb on - strand, within MPMX20_03067 at 3217.045 kb on - strand, within MPMX20_03067 at 3217.045 kb on - strand, within MPMX20_03067
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,214,827 + +0.6 3,214,850 + +0.3 3,214,892 + +0.8 3,215,002 + MPMX20_03065 0.15 +1.0 3,215,010 - MPMX20_03065 0.16 -2.2 3,215,109 - MPMX20_03065 0.29 +2.0 3,215,109 - MPMX20_03065 0.29 -0.1 3,215,109 - MPMX20_03065 0.29 +1.0 3,215,109 - MPMX20_03065 0.29 +6.5 3,215,109 - MPMX20_03065 0.29 -0.2 3,215,129 + MPMX20_03065 0.32 -1.4 3,215,208 + MPMX20_03065 0.43 -1.0 3,215,214 - MPMX20_03065 0.44 +2.0 3,215,228 + MPMX20_03065 0.46 +1.3 3,215,275 + MPMX20_03065 0.52 +0.8 3,215,287 + MPMX20_03065 0.54 -1.6 3,215,429 + MPMX20_03065 0.74 +2.3 3,215,440 - MPMX20_03065 0.75 -0.3 3,215,448 + MPMX20_03065 0.76 -1.5 3,215,456 - MPMX20_03065 0.77 -0.6 3,215,456 - MPMX20_03065 0.77 +0.4 3,215,462 + MPMX20_03065 0.78 -0.2 3,215,482 + MPMX20_03065 0.81 +2.8 3,215,537 + MPMX20_03065 0.89 -1.0 3,215,568 + -0.2 3,215,568 + -1.0 3,215,576 - -1.1 3,215,576 - +0.0 3,215,603 + -0.1 3,215,611 - +1.2 3,215,627 - +1.2 3,215,677 + +1.0 3,215,795 + MPMX20_03066 0.12 -0.4 3,215,795 + MPMX20_03066 0.12 -3.8 3,215,803 - MPMX20_03066 0.15 -0.5 3,215,808 - MPMX20_03066 0.16 +0.5 3,215,822 - MPMX20_03066 0.20 -0.9 3,215,832 + MPMX20_03066 0.23 -0.0 3,215,832 + MPMX20_03066 0.23 +0.5 3,215,846 + MPMX20_03066 0.28 +0.6 3,215,846 + MPMX20_03066 0.28 +1.2 3,215,846 + MPMX20_03066 0.28 -0.8 3,215,846 + MPMX20_03066 0.28 -0.5 3,215,846 + MPMX20_03066 0.28 -0.3 3,215,854 - MPMX20_03066 0.30 -0.9 3,215,854 - MPMX20_03066 0.30 -1.3 3,215,854 - MPMX20_03066 0.30 +0.3 3,215,932 - MPMX20_03066 0.53 -0.1 3,215,994 + MPMX20_03066 0.72 +0.2 3,215,999 + MPMX20_03066 0.74 -1.0 3,216,007 + MPMX20_03066 0.76 -0.3 3,216,007 + MPMX20_03066 0.76 -0.6 3,216,007 - MPMX20_03066 0.76 -0.8 3,216,023 + MPMX20_03066 0.81 -0.4 3,216,041 + MPMX20_03066 0.86 +1.2 3,216,041 + MPMX20_03066 0.86 -1.2 3,216,067 + +1.6 3,216,075 + -1.4 3,216,077 - -1.1 3,216,102 - +2.0 3,216,112 - +0.5 3,216,126 + -1.6 3,216,163 + -1.0 3,216,171 - +1.4 3,216,210 + +1.7 3,216,210 + -0.3 3,216,217 + -1.2 3,216,218 - -0.9 3,216,218 - +1.5 3,216,218 - +0.4 3,216,251 - +0.0 3,216,403 + MPMX20_03067 0.12 -0.3 3,216,404 + MPMX20_03067 0.12 +0.7 3,216,411 - MPMX20_03067 0.12 +2.7 3,216,412 - MPMX20_03067 0.13 +0.7 3,216,440 + MPMX20_03067 0.15 +0.2 3,216,441 - MPMX20_03067 0.15 -0.5 3,216,594 + MPMX20_03067 0.26 +0.2 3,216,602 - MPMX20_03067 0.27 -1.3 3,216,634 + MPMX20_03067 0.29 -1.0 3,216,640 + MPMX20_03067 0.29 -2.9 3,216,640 + MPMX20_03067 0.29 +0.1 3,216,640 + MPMX20_03067 0.29 -0.9 3,216,640 + MPMX20_03067 0.29 +0.3 3,216,648 - MPMX20_03067 0.30 -0.4 3,216,655 + MPMX20_03067 0.30 +0.7 3,216,747 + MPMX20_03067 0.37 -0.9 3,216,747 + MPMX20_03067 0.37 +0.1 3,216,747 + MPMX20_03067 0.37 -0.8 3,216,747 + MPMX20_03067 0.37 -1.2 3,216,747 + MPMX20_03067 0.37 +1.8 3,216,747 + MPMX20_03067 0.37 -0.1 3,216,747 + MPMX20_03067 0.37 +1.3 3,216,753 + MPMX20_03067 0.38 -2.1 3,216,755 - MPMX20_03067 0.38 -0.1 3,216,755 - MPMX20_03067 0.38 -0.4 3,216,755 - MPMX20_03067 0.38 -1.5 3,216,755 - MPMX20_03067 0.38 -1.5 3,216,755 - MPMX20_03067 0.38 -0.1 3,216,755 - MPMX20_03067 0.38 -1.0 3,216,755 - MPMX20_03067 0.38 -0.5 3,216,755 - MPMX20_03067 0.38 -2.6 3,216,755 - MPMX20_03067 0.38 -0.3 3,216,761 - MPMX20_03067 0.38 -1.1 3,216,761 - MPMX20_03067 0.38 +0.1 3,216,766 - MPMX20_03067 0.39 -0.1 3,216,805 + MPMX20_03067 0.41 +0.2 3,216,941 + MPMX20_03067 0.51 -1.1 3,216,987 - MPMX20_03067 0.55 +1.4 3,217,037 + MPMX20_03067 0.58 -0.1 3,217,037 + MPMX20_03067 0.58 +1.4 3,217,045 - MPMX20_03067 0.59 +3.1 3,217,045 - MPMX20_03067 0.59 +3.9 3,217,045 - MPMX20_03067 0.59 +0.7
Or see this region's nucleotide sequence