Experiment: TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02152 and MPMX20_02153 are separated by 138 nucleotides MPMX20_02153 and MPMX20_02154 are separated by 9 nucleotides MPMX20_02154 and MPMX20_02155 are separated by 94 nucleotides
MPMX20_02152: MPMX20_02152 - Phenylacetate-coenzyme A ligase, at 2,244,081 to 2,245,397
_02152
MPMX20_02153: MPMX20_02153 - Transcriptional repressor PaaX, at 2,245,536 to 2,246,462
_02153
MPMX20_02154: MPMX20_02154 - Protein YrdA, at 2,246,472 to 2,247,068
_02154
MPMX20_02155: MPMX20_02155 - Coagulase/fibrinolysin, at 2,247,163 to 2,248,101
_02155
Position (kb)
2245
2246
2247 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2244.643 kb on + strand, within MPMX20_02152 at 2244.674 kb on + strand, within MPMX20_02152 at 2244.806 kb on + strand, within MPMX20_02152 at 2244.947 kb on - strand, within MPMX20_02152 at 2244.949 kb on - strand, within MPMX20_02152 at 2244.956 kb on + strand, within MPMX20_02152 at 2244.964 kb on - strand, within MPMX20_02152 at 2244.999 kb on - strand, within MPMX20_02152 at 2245.021 kb on - strand, within MPMX20_02152 at 2245.021 kb on - strand, within MPMX20_02152 at 2245.094 kb on + strand, within MPMX20_02152 at 2245.139 kb on + strand, within MPMX20_02152 at 2245.222 kb on + strand, within MPMX20_02152 at 2245.230 kb on - strand, within MPMX20_02152 at 2245.230 kb on - strand, within MPMX20_02152 at 2245.230 kb on - strand, within MPMX20_02152 at 2245.258 kb on + strand, within MPMX20_02152 at 2245.258 kb on + strand, within MPMX20_02152 at 2245.258 kb on + strand, within MPMX20_02152 at 2245.266 kb on - strand at 2245.266 kb on - strand at 2245.266 kb on - strand at 2245.290 kb on + strand at 2245.354 kb on - strand at 2245.354 kb on - strand at 2245.408 kb on + strand at 2245.427 kb on + strand at 2245.470 kb on - strand at 2245.506 kb on - strand at 2245.552 kb on + strand at 2245.560 kb on - strand at 2245.560 kb on - strand at 2245.560 kb on - strand at 2245.578 kb on + strand at 2245.689 kb on - strand, within MPMX20_02153 at 2245.713 kb on + strand, within MPMX20_02153 at 2245.820 kb on + strand, within MPMX20_02153 at 2245.841 kb on + strand, within MPMX20_02153 at 2245.844 kb on + strand, within MPMX20_02153 at 2246.097 kb on - strand, within MPMX20_02153 at 2246.266 kb on - strand, within MPMX20_02153 at 2246.283 kb on + strand, within MPMX20_02153 at 2246.293 kb on - strand, within MPMX20_02153 at 2246.306 kb on - strand, within MPMX20_02153 at 2246.308 kb on + strand, within MPMX20_02153 at 2246.322 kb on - strand, within MPMX20_02153 at 2246.385 kb on + strand at 2246.393 kb on - strand at 2246.456 kb on + strand at 2246.464 kb on + strand at 2246.494 kb on + strand at 2246.527 kb on - strand at 2246.531 kb on + strand at 2246.554 kb on + strand, within MPMX20_02154 at 2246.564 kb on + strand, within MPMX20_02154 at 2246.567 kb on - strand, within MPMX20_02154 at 2246.668 kb on + strand, within MPMX20_02154 at 2246.676 kb on + strand, within MPMX20_02154 at 2246.676 kb on - strand, within MPMX20_02154 at 2246.681 kb on + strand, within MPMX20_02154 at 2246.689 kb on - strand, within MPMX20_02154 at 2246.724 kb on + strand, within MPMX20_02154 at 2246.737 kb on + strand, within MPMX20_02154 at 2246.737 kb on + strand, within MPMX20_02154 at 2246.778 kb on + strand, within MPMX20_02154 at 2246.786 kb on - strand, within MPMX20_02154 at 2246.861 kb on + strand, within MPMX20_02154 at 2246.903 kb on - strand, within MPMX20_02154 at 2246.913 kb on - strand, within MPMX20_02154 at 2246.916 kb on - strand, within MPMX20_02154 at 2246.941 kb on - strand, within MPMX20_02154 at 2246.941 kb on - strand, within MPMX20_02154 at 2246.951 kb on + strand, within MPMX20_02154 at 2246.965 kb on + strand, within MPMX20_02154 at 2246.987 kb on + strand, within MPMX20_02154 at 2247.014 kb on - strand at 2247.024 kb on + strand at 2247.095 kb on - strand at 2247.127 kb on + strand at 2247.127 kb on + strand at 2247.130 kb on - strand at 2247.132 kb on + strand at 2247.132 kb on + strand at 2247.132 kb on + strand at 2247.132 kb on + strand at 2247.135 kb on - strand at 2247.140 kb on - strand at 2247.140 kb on - strand at 2247.142 kb on + strand at 2247.150 kb on - strand at 2247.150 kb on - strand at 2247.172 kb on + strand at 2247.194 kb on + strand at 2247.194 kb on + strand at 2247.241 kb on + strand at 2247.241 kb on + strand at 2247.249 kb on - strand at 2247.278 kb on + strand, within MPMX20_02155 at 2247.278 kb on + strand, within MPMX20_02155 at 2247.278 kb on + strand, within MPMX20_02155 at 2247.278 kb on + strand, within MPMX20_02155 at 2247.278 kb on + strand, within MPMX20_02155 at 2247.278 kb on + strand, within MPMX20_02155 at 2247.285 kb on - strand, within MPMX20_02155 at 2247.286 kb on - strand, within MPMX20_02155 at 2247.286 kb on - strand, within MPMX20_02155 at 2247.288 kb on + strand, within MPMX20_02155 at 2247.298 kb on + strand, within MPMX20_02155 at 2247.298 kb on + strand, within MPMX20_02155 at 2247.298 kb on + strand, within MPMX20_02155 at 2247.298 kb on + strand, within MPMX20_02155 at 2247.304 kb on - strand, within MPMX20_02155 at 2247.311 kb on - strand, within MPMX20_02155 at 2247.340 kb on + strand, within MPMX20_02155 at 2247.340 kb on + strand, within MPMX20_02155 at 2247.345 kb on + strand, within MPMX20_02155 at 2247.346 kb on - strand, within MPMX20_02155 at 2247.348 kb on - strand, within MPMX20_02155 at 2247.363 kb on + strand, within MPMX20_02155 at 2247.363 kb on + strand, within MPMX20_02155 at 2247.363 kb on + strand, within MPMX20_02155 at 2247.363 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.365 kb on + strand, within MPMX20_02155 at 2247.371 kb on - strand, within MPMX20_02155 at 2247.373 kb on - strand, within MPMX20_02155 at 2247.373 kb on - strand, within MPMX20_02155 at 2247.373 kb on - strand, within MPMX20_02155 at 2247.373 kb on - strand, within MPMX20_02155 at 2247.373 kb on - strand, within MPMX20_02155 at 2247.378 kb on + strand, within MPMX20_02155 at 2247.378 kb on + strand, within MPMX20_02155 at 2247.378 kb on + strand, within MPMX20_02155 at 2247.378 kb on + strand, within MPMX20_02155 at 2247.378 kb on + strand, within MPMX20_02155 at 2247.378 kb on + strand, within MPMX20_02155 at 2247.379 kb on + strand, within MPMX20_02155 at 2247.386 kb on - strand, within MPMX20_02155 at 2247.386 kb on - strand, within MPMX20_02155 at 2247.386 kb on - strand, within MPMX20_02155 at 2247.386 kb on - strand, within MPMX20_02155 at 2247.387 kb on - strand, within MPMX20_02155 at 2247.387 kb on - strand, within MPMX20_02155 at 2247.395 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.399 kb on + strand, within MPMX20_02155 at 2247.407 kb on - strand, within MPMX20_02155 at 2247.408 kb on - strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.410 kb on + strand, within MPMX20_02155 at 2247.413 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.418 kb on - strand, within MPMX20_02155 at 2247.425 kb on + strand, within MPMX20_02155 at 2247.425 kb on + strand, within MPMX20_02155 at 2247.425 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.427 kb on + strand, within MPMX20_02155 at 2247.432 kb on + strand, within MPMX20_02155 at 2247.433 kb on - strand, within MPMX20_02155 at 2247.435 kb on - strand, within MPMX20_02155 at 2247.437 kb on + strand, within MPMX20_02155 at 2247.437 kb on + strand, within MPMX20_02155 at 2247.438 kb on + strand, within MPMX20_02155 at 2247.438 kb on + strand, within MPMX20_02155 at 2247.455 kb on + strand, within MPMX20_02155
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,244,643 + MPMX20_02152 0.43 +1.0 2,244,674 + MPMX20_02152 0.45 +0.9 2,244,806 + MPMX20_02152 0.55 -1.6 2,244,947 - MPMX20_02152 0.66 -2.0 2,244,949 - MPMX20_02152 0.66 -1.2 2,244,956 + MPMX20_02152 0.66 -0.0 2,244,964 - MPMX20_02152 0.67 -1.4 2,244,999 - MPMX20_02152 0.70 +0.1 2,245,021 - MPMX20_02152 0.71 -0.5 2,245,021 - MPMX20_02152 0.71 -0.5 2,245,094 + MPMX20_02152 0.77 +0.6 2,245,139 + MPMX20_02152 0.80 +1.8 2,245,222 + MPMX20_02152 0.87 -1.3 2,245,230 - MPMX20_02152 0.87 -0.8 2,245,230 - MPMX20_02152 0.87 -0.8 2,245,230 - MPMX20_02152 0.87 +0.3 2,245,258 + MPMX20_02152 0.89 -0.6 2,245,258 + MPMX20_02152 0.89 +1.0 2,245,258 + MPMX20_02152 0.89 +0.1 2,245,266 - +1.1 2,245,266 - +0.4 2,245,266 - -0.6 2,245,290 + -1.6 2,245,354 - -0.3 2,245,354 - +1.0 2,245,408 + +1.8 2,245,427 + +0.3 2,245,470 - -0.8 2,245,506 - -2.3 2,245,552 + -0.0 2,245,560 - -0.8 2,245,560 - -1.0 2,245,560 - +3.0 2,245,578 + +1.0 2,245,689 - MPMX20_02153 0.17 -0.5 2,245,713 + MPMX20_02153 0.19 -1.5 2,245,820 + MPMX20_02153 0.31 +0.7 2,245,841 + MPMX20_02153 0.33 +1.0 2,245,844 + MPMX20_02153 0.33 -0.7 2,246,097 - MPMX20_02153 0.61 -3.0 2,246,266 - MPMX20_02153 0.79 +2.0 2,246,283 + MPMX20_02153 0.81 -0.9 2,246,293 - MPMX20_02153 0.82 -1.9 2,246,306 - MPMX20_02153 0.83 -0.4 2,246,308 + MPMX20_02153 0.83 -0.3 2,246,322 - MPMX20_02153 0.85 -3.3 2,246,385 + +1.0 2,246,393 - +2.0 2,246,456 + -2.3 2,246,464 + -1.1 2,246,494 + +1.2 2,246,527 - -0.6 2,246,531 + -0.4 2,246,554 + MPMX20_02154 0.14 -0.6 2,246,564 + MPMX20_02154 0.15 -2.4 2,246,567 - MPMX20_02154 0.16 -0.3 2,246,668 + MPMX20_02154 0.33 -0.7 2,246,676 + MPMX20_02154 0.34 -0.5 2,246,676 - MPMX20_02154 0.34 -0.9 2,246,681 + MPMX20_02154 0.35 -0.0 2,246,689 - MPMX20_02154 0.36 -0.3 2,246,724 + MPMX20_02154 0.42 +0.6 2,246,737 + MPMX20_02154 0.44 -1.2 2,246,737 + MPMX20_02154 0.44 +0.2 2,246,778 + MPMX20_02154 0.51 -0.2 2,246,786 - MPMX20_02154 0.53 +1.0 2,246,861 + MPMX20_02154 0.65 -0.6 2,246,903 - MPMX20_02154 0.72 +0.1 2,246,913 - MPMX20_02154 0.74 -0.6 2,246,916 - MPMX20_02154 0.74 +1.4 2,246,941 - MPMX20_02154 0.79 +1.6 2,246,941 - MPMX20_02154 0.79 +1.3 2,246,951 + MPMX20_02154 0.80 -0.5 2,246,965 + MPMX20_02154 0.83 -0.6 2,246,987 + MPMX20_02154 0.86 -2.3 2,247,014 - -2.3 2,247,024 + -1.3 2,247,095 - -1.6 2,247,127 + -0.5 2,247,127 + +0.5 2,247,130 - -0.5 2,247,132 + -1.7 2,247,132 + +2.2 2,247,132 + -1.0 2,247,132 + +0.3 2,247,135 - -2.1 2,247,140 - +1.0 2,247,140 - +2.0 2,247,142 + -0.5 2,247,150 - -1.4 2,247,150 - -0.6 2,247,172 + +1.5 2,247,194 + +0.2 2,247,194 + -1.0 2,247,241 + -0.3 2,247,241 + -0.3 2,247,249 - -1.0 2,247,278 + MPMX20_02155 0.12 -1.0 2,247,278 + MPMX20_02155 0.12 -1.0 2,247,278 + MPMX20_02155 0.12 +0.2 2,247,278 + MPMX20_02155 0.12 -0.5 2,247,278 + MPMX20_02155 0.12 +0.5 2,247,278 + MPMX20_02155 0.12 +0.6 2,247,285 - MPMX20_02155 0.13 -0.4 2,247,286 - MPMX20_02155 0.13 +0.7 2,247,286 - MPMX20_02155 0.13 -0.6 2,247,288 + MPMX20_02155 0.13 -0.0 2,247,298 + MPMX20_02155 0.14 -0.3 2,247,298 + MPMX20_02155 0.14 -0.4 2,247,298 + MPMX20_02155 0.14 +0.0 2,247,298 + MPMX20_02155 0.14 -0.2 2,247,304 - MPMX20_02155 0.15 +0.8 2,247,311 - MPMX20_02155 0.16 -0.6 2,247,340 + MPMX20_02155 0.19 -0.4 2,247,340 + MPMX20_02155 0.19 +3.0 2,247,345 + MPMX20_02155 0.19 +2.3 2,247,346 - MPMX20_02155 0.19 -0.5 2,247,348 - MPMX20_02155 0.20 -0.6 2,247,363 + MPMX20_02155 0.21 +0.1 2,247,363 + MPMX20_02155 0.21 +1.0 2,247,363 + MPMX20_02155 0.21 -1.8 2,247,363 + MPMX20_02155 0.21 -0.8 2,247,365 + MPMX20_02155 0.22 -0.0 2,247,365 + MPMX20_02155 0.22 +0.3 2,247,365 + MPMX20_02155 0.22 -0.2 2,247,365 + MPMX20_02155 0.22 -0.0 2,247,365 + MPMX20_02155 0.22 +0.3 2,247,365 + MPMX20_02155 0.22 -0.3 2,247,365 + MPMX20_02155 0.22 -0.7 2,247,365 + MPMX20_02155 0.22 -0.4 2,247,365 + MPMX20_02155 0.22 -0.5 2,247,365 + MPMX20_02155 0.22 +0.1 2,247,365 + MPMX20_02155 0.22 -1.6 2,247,365 + MPMX20_02155 0.22 -0.8 2,247,365 + MPMX20_02155 0.22 -1.1 2,247,365 + MPMX20_02155 0.22 -0.4 2,247,371 - MPMX20_02155 0.22 -0.4 2,247,373 - MPMX20_02155 0.22 -0.7 2,247,373 - MPMX20_02155 0.22 +1.6 2,247,373 - MPMX20_02155 0.22 -0.8 2,247,373 - MPMX20_02155 0.22 +0.7 2,247,373 - MPMX20_02155 0.22 +1.1 2,247,378 + MPMX20_02155 0.23 -0.5 2,247,378 + MPMX20_02155 0.23 +0.3 2,247,378 + MPMX20_02155 0.23 -0.7 2,247,378 + MPMX20_02155 0.23 +3.6 2,247,378 + MPMX20_02155 0.23 -1.8 2,247,378 + MPMX20_02155 0.23 -0.8 2,247,379 + MPMX20_02155 0.23 -0.1 2,247,386 - MPMX20_02155 0.24 -0.1 2,247,386 - MPMX20_02155 0.24 -1.2 2,247,386 - MPMX20_02155 0.24 +1.7 2,247,386 - MPMX20_02155 0.24 -0.1 2,247,387 - MPMX20_02155 0.24 +0.6 2,247,387 - MPMX20_02155 0.24 -0.0 2,247,395 + MPMX20_02155 0.25 -1.6 2,247,399 + MPMX20_02155 0.25 +0.4 2,247,399 + MPMX20_02155 0.25 -0.8 2,247,399 + MPMX20_02155 0.25 -0.0 2,247,399 + MPMX20_02155 0.25 -0.6 2,247,399 + MPMX20_02155 0.25 -0.6 2,247,399 + MPMX20_02155 0.25 +1.5 2,247,399 + MPMX20_02155 0.25 +0.7 2,247,399 + MPMX20_02155 0.25 -0.9 2,247,407 - MPMX20_02155 0.26 -1.2 2,247,408 - MPMX20_02155 0.26 +2.0 2,247,410 + MPMX20_02155 0.26 +1.6 2,247,410 + MPMX20_02155 0.26 +1.0 2,247,410 + MPMX20_02155 0.26 -0.1 2,247,410 + MPMX20_02155 0.26 -0.0 2,247,410 + MPMX20_02155 0.26 -1.9 2,247,410 + MPMX20_02155 0.26 -0.5 2,247,410 + MPMX20_02155 0.26 -0.0 2,247,410 + MPMX20_02155 0.26 -0.4 2,247,410 + MPMX20_02155 0.26 +0.5 2,247,410 + MPMX20_02155 0.26 -0.3 2,247,410 + MPMX20_02155 0.26 +1.0 2,247,410 + MPMX20_02155 0.26 -2.9 2,247,410 + MPMX20_02155 0.26 -0.8 2,247,410 + MPMX20_02155 0.26 -2.1 2,247,410 + MPMX20_02155 0.26 -0.8 2,247,410 + MPMX20_02155 0.26 -0.2 2,247,410 + MPMX20_02155 0.26 -1.4 2,247,410 + MPMX20_02155 0.26 +1.0 2,247,413 - MPMX20_02155 0.27 +0.4 2,247,418 - MPMX20_02155 0.27 -0.0 2,247,418 - MPMX20_02155 0.27 -0.8 2,247,418 - MPMX20_02155 0.27 +0.4 2,247,418 - MPMX20_02155 0.27 -0.9 2,247,418 - MPMX20_02155 0.27 +3.0 2,247,418 - MPMX20_02155 0.27 -1.3 2,247,418 - MPMX20_02155 0.27 -2.0 2,247,418 - MPMX20_02155 0.27 +1.2 2,247,418 - MPMX20_02155 0.27 +1.0 2,247,425 + MPMX20_02155 0.28 -0.9 2,247,425 + MPMX20_02155 0.28 -2.0 2,247,425 + MPMX20_02155 0.28 -0.2 2,247,427 + MPMX20_02155 0.28 +0.6 2,247,427 + MPMX20_02155 0.28 -1.6 2,247,427 + MPMX20_02155 0.28 -0.2 2,247,427 + MPMX20_02155 0.28 +0.6 2,247,427 + MPMX20_02155 0.28 -1.3 2,247,427 + MPMX20_02155 0.28 +0.2 2,247,427 + MPMX20_02155 0.28 -0.2 2,247,427 + MPMX20_02155 0.28 +0.0 2,247,427 + MPMX20_02155 0.28 -1.0 2,247,432 + MPMX20_02155 0.29 +0.7 2,247,433 - MPMX20_02155 0.29 -1.4 2,247,435 - MPMX20_02155 0.29 +0.3 2,247,437 + MPMX20_02155 0.29 -1.8 2,247,437 + MPMX20_02155 0.29 +1.0 2,247,438 + MPMX20_02155 0.29 +0.1 2,247,438 + MPMX20_02155 0.29 -1.7 2,247,455 + MPMX20_02155 0.31 -1.3
Or see this region's nucleotide sequence