Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03588

Experiment: M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03586 and MPMX20_03587 overlap by 4 nucleotidesMPMX20_03587 and MPMX20_03588 are separated by 12 nucleotidesMPMX20_03588 and MPMX20_03589 are separated by 15 nucleotidesMPMX20_03589 and MPMX20_03590 are separated by 61 nucleotides MPMX20_03586: MPMX20_03586 - PTS system glucitol/sorbitol-specific EIIC component, at 3,775,992 to 3,776,555 _03586 MPMX20_03587: MPMX20_03587 - PTS system glucitol/sorbitol-specific EIIB component, at 3,776,552 to 3,777,511 _03587 MPMX20_03588: MPMX20_03588 - PTS system glucitol/sorbitol-specific EIIA component, at 3,777,524 to 3,777,886 _03588 MPMX20_03589: MPMX20_03589 - Sorbitol-6-phosphate 2-dehydrogenase, at 3,777,902 to 3,778,681 _03589 MPMX20_03590: MPMX20_03590 - hypothetical protein, at 3,778,743 to 3,779,102 _03590 Position (kb) 3777 3778Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3776.558 kb on - strandat 3776.655 kb on - strand, within MPMX20_03587at 3776.691 kb on + strand, within MPMX20_03587at 3776.691 kb on + strand, within MPMX20_03587at 3776.709 kb on + strand, within MPMX20_03587at 3776.798 kb on - strand, within MPMX20_03587at 3776.808 kb on - strand, within MPMX20_03587at 3776.821 kb on - strand, within MPMX20_03587at 3776.840 kb on + strand, within MPMX20_03587at 3776.849 kb on + strand, within MPMX20_03587at 3776.849 kb on + strand, within MPMX20_03587at 3776.857 kb on - strand, within MPMX20_03587at 3776.867 kb on - strand, within MPMX20_03587at 3776.906 kb on - strand, within MPMX20_03587at 3776.917 kb on - strand, within MPMX20_03587at 3776.917 kb on - strand, within MPMX20_03587at 3776.988 kb on - strand, within MPMX20_03587at 3777.011 kb on + strand, within MPMX20_03587at 3777.018 kb on + strand, within MPMX20_03587at 3777.018 kb on + strand, within MPMX20_03587at 3777.026 kb on - strand, within MPMX20_03587at 3777.037 kb on + strand, within MPMX20_03587at 3777.061 kb on + strand, within MPMX20_03587at 3777.159 kb on + strand, within MPMX20_03587at 3777.178 kb on + strand, within MPMX20_03587at 3777.197 kb on - strand, within MPMX20_03587at 3777.211 kb on - strand, within MPMX20_03587at 3777.216 kb on - strand, within MPMX20_03587at 3777.216 kb on - strand, within MPMX20_03587at 3777.265 kb on + strand, within MPMX20_03587at 3777.273 kb on - strand, within MPMX20_03587at 3777.273 kb on - strand, within MPMX20_03587at 3777.273 kb on - strand, within MPMX20_03587at 3777.273 kb on - strand, within MPMX20_03587at 3777.285 kb on - strand, within MPMX20_03587at 3777.381 kb on + strand, within MPMX20_03587at 3777.401 kb on + strand, within MPMX20_03587at 3777.401 kb on + strand, within MPMX20_03587at 3777.401 kb on + strand, within MPMX20_03587at 3777.409 kb on - strand, within MPMX20_03587at 3777.413 kb on - strand, within MPMX20_03587at 3777.429 kb on + strandat 3777.439 kb on + strandat 3777.563 kb on - strand, within MPMX20_03588at 3777.568 kb on - strand, within MPMX20_03588at 3777.645 kb on - strand, within MPMX20_03588at 3777.676 kb on + strand, within MPMX20_03588at 3777.676 kb on + strand, within MPMX20_03588at 3777.690 kb on - strand, within MPMX20_03588at 3777.747 kb on + strand, within MPMX20_03588at 3777.847 kb on + strand, within MPMX20_03588at 3777.857 kb on - strandat 3777.868 kb on - strandat 3777.976 kb on + strandat 3777.976 kb on + strandat 3777.976 kb on + strandat 3777.976 kb on + strandat 3777.976 kb on + strandat 3777.984 kb on - strand, within MPMX20_03589at 3777.984 kb on - strand, within MPMX20_03589at 3777.984 kb on - strand, within MPMX20_03589at 3777.984 kb on - strand, within MPMX20_03589at 3777.984 kb on - strand, within MPMX20_03589at 3778.060 kb on - strand, within MPMX20_03589at 3778.089 kb on + strand, within MPMX20_03589at 3778.152 kb on + strand, within MPMX20_03589at 3778.162 kb on - strand, within MPMX20_03589at 3778.162 kb on - strand, within MPMX20_03589at 3778.162 kb on - strand, within MPMX20_03589at 3778.164 kb on + strand, within MPMX20_03589at 3778.164 kb on + strand, within MPMX20_03589at 3778.169 kb on + strand, within MPMX20_03589at 3778.172 kb on - strand, within MPMX20_03589at 3778.205 kb on - strand, within MPMX20_03589at 3778.231 kb on + strand, within MPMX20_03589at 3778.231 kb on + strand, within MPMX20_03589at 3778.361 kb on - strand, within MPMX20_03589at 3778.361 kb on - strand, within MPMX20_03589at 3778.383 kb on + strand, within MPMX20_03589at 3778.391 kb on - strand, within MPMX20_03589at 3778.535 kb on + strand, within MPMX20_03589at 3778.540 kb on + strand, within MPMX20_03589at 3778.548 kb on - strand, within MPMX20_03589at 3778.548 kb on - strand, within MPMX20_03589at 3778.635 kb on + strandat 3778.635 kb on + strandat 3778.655 kb on - strandat 3778.662 kb on + strandat 3778.683 kb on - strandat 3778.852 kb on - strand, within MPMX20_03590at 3778.852 kb on - strand, within MPMX20_03590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,776,558 - -0.9
3,776,655 - MPMX20_03587 0.11 -1.3
3,776,691 + MPMX20_03587 0.14 -1.9
3,776,691 + MPMX20_03587 0.14 +1.5
3,776,709 + MPMX20_03587 0.16 +0.3
3,776,798 - MPMX20_03587 0.26 +0.4
3,776,808 - MPMX20_03587 0.27 -0.1
3,776,821 - MPMX20_03587 0.28 -0.5
3,776,840 + MPMX20_03587 0.30 -0.5
3,776,849 + MPMX20_03587 0.31 +2.5
3,776,849 + MPMX20_03587 0.31 -1.4
3,776,857 - MPMX20_03587 0.32 -2.0
3,776,867 - MPMX20_03587 0.33 -1.3
3,776,906 - MPMX20_03587 0.37 -1.9
3,776,917 - MPMX20_03587 0.38 +0.1
3,776,917 - MPMX20_03587 0.38 +1.0
3,776,988 - MPMX20_03587 0.45 +1.3
3,777,011 + MPMX20_03587 0.48 -2.4
3,777,018 + MPMX20_03587 0.49 -0.6
3,777,018 + MPMX20_03587 0.49 +1.2
3,777,026 - MPMX20_03587 0.49 +0.4
3,777,037 + MPMX20_03587 0.51 -1.0
3,777,061 + MPMX20_03587 0.53 -1.2
3,777,159 + MPMX20_03587 0.63 -0.1
3,777,178 + MPMX20_03587 0.65 +2.9
3,777,197 - MPMX20_03587 0.67 -2.4
3,777,211 - MPMX20_03587 0.69 -0.5
3,777,216 - MPMX20_03587 0.69 -1.6
3,777,216 - MPMX20_03587 0.69 -0.1
3,777,265 + MPMX20_03587 0.74 +0.9
3,777,273 - MPMX20_03587 0.75 +0.7
3,777,273 - MPMX20_03587 0.75 +0.1
3,777,273 - MPMX20_03587 0.75 +2.8
3,777,273 - MPMX20_03587 0.75 +0.1
3,777,285 - MPMX20_03587 0.76 -1.2
3,777,381 + MPMX20_03587 0.86 +0.7
3,777,401 + MPMX20_03587 0.88 -0.9
3,777,401 + MPMX20_03587 0.88 -1.2
3,777,401 + MPMX20_03587 0.88 +0.9
3,777,409 - MPMX20_03587 0.89 -2.1
3,777,413 - MPMX20_03587 0.90 -2.2
3,777,429 + -0.1
3,777,439 + -1.0
3,777,563 - MPMX20_03588 0.11 -0.9
3,777,568 - MPMX20_03588 0.12 -2.1
3,777,645 - MPMX20_03588 0.33 -2.7
3,777,676 + MPMX20_03588 0.42 +1.1
3,777,676 + MPMX20_03588 0.42 -0.3
3,777,690 - MPMX20_03588 0.46 -0.1
3,777,747 + MPMX20_03588 0.61 +1.4
3,777,847 + MPMX20_03588 0.89 +0.4
3,777,857 - -0.3
3,777,868 - -0.5
3,777,976 + +0.2
3,777,976 + -0.8
3,777,976 + +0.9
3,777,976 + +0.0
3,777,976 + -2.1
3,777,984 - MPMX20_03589 0.11 -1.9
3,777,984 - MPMX20_03589 0.11 -0.3
3,777,984 - MPMX20_03589 0.11 +0.2
3,777,984 - MPMX20_03589 0.11 -0.1
3,777,984 - MPMX20_03589 0.11 -1.6
3,778,060 - MPMX20_03589 0.20 -0.4
3,778,089 + MPMX20_03589 0.24 +1.2
3,778,152 + MPMX20_03589 0.32 -1.2
3,778,162 - MPMX20_03589 0.33 +2.0
3,778,162 - MPMX20_03589 0.33 +3.0
3,778,162 - MPMX20_03589 0.33 +0.9
3,778,164 + MPMX20_03589 0.34 +0.6
3,778,164 + MPMX20_03589 0.34 -0.6
3,778,169 + MPMX20_03589 0.34 +2.5
3,778,172 - MPMX20_03589 0.35 -2.4
3,778,205 - MPMX20_03589 0.39 +0.8
3,778,231 + MPMX20_03589 0.42 -2.2
3,778,231 + MPMX20_03589 0.42 -1.9
3,778,361 - MPMX20_03589 0.59 -1.6
3,778,361 - MPMX20_03589 0.59 +0.6
3,778,383 + MPMX20_03589 0.62 -1.4
3,778,391 - MPMX20_03589 0.63 +0.9
3,778,535 + MPMX20_03589 0.81 -0.4
3,778,540 + MPMX20_03589 0.82 -1.6
3,778,548 - MPMX20_03589 0.83 -1.0
3,778,548 - MPMX20_03589 0.83 +0.4
3,778,635 + -0.8
3,778,635 + +0.4
3,778,655 - -0.4
3,778,662 + +0.2
3,778,683 - -1.2
3,778,852 - MPMX20_03590 0.30 -0.4
3,778,852 - MPMX20_03590 0.30 -0.4

Or see this region's nucleotide sequence