Experiment: M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02278 and MPMX20_02279 are separated by 143 nucleotides MPMX20_02279 and MPMX20_02280 are separated by 145 nucleotides MPMX20_02280 and MPMX20_02281 are separated by 44 nucleotides MPMX20_02281 and MPMX20_02282 overlap by 4 nucleotides
MPMX20_02278: MPMX20_02278 - hypothetical protein, at 2,389,709 to 2,390,257
_02278
MPMX20_02279: MPMX20_02279 - hypothetical protein, at 2,390,401 to 2,390,841
_02279
MPMX20_02280: MPMX20_02280 - Haloalkane dehalogenase, at 2,390,987 to 2,391,982
_02280
MPMX20_02281: MPMX20_02281 - Transcriptional regulatory protein OmpR, at 2,392,027 to 2,392,767
_02281
MPMX20_02282: MPMX20_02282 - Sensor histidine kinase RcsC, at 2,392,764 to 2,394,062
_02282
Position (kb)
2390
2391
2392 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2389.992 kb on + strand, within MPMX20_02278 at 2390.031 kb on + strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.097 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.134 kb on + strand, within MPMX20_02278 at 2390.134 kb on - strand, within MPMX20_02278 at 2390.134 kb on - strand, within MPMX20_02278 at 2390.134 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.137 kb on - strand, within MPMX20_02278 at 2390.142 kb on - strand, within MPMX20_02278 at 2390.142 kb on - strand, within MPMX20_02278 at 2390.142 kb on - strand, within MPMX20_02278 at 2390.158 kb on + strand, within MPMX20_02278 at 2390.172 kb on + strand, within MPMX20_02278 at 2390.172 kb on + strand, within MPMX20_02278 at 2390.172 kb on + strand, within MPMX20_02278 at 2390.191 kb on + strand, within MPMX20_02278 at 2390.202 kb on + strand, within MPMX20_02278 at 2390.205 kb on - strand at 2390.207 kb on + strand at 2390.230 kb on + strand at 2390.272 kb on + strand at 2390.272 kb on + strand at 2390.272 kb on + strand at 2390.272 kb on + strand at 2390.280 kb on - strand at 2390.343 kb on - strand at 2390.353 kb on + strand at 2390.397 kb on + strand at 2390.397 kb on + strand at 2390.405 kb on - strand at 2390.405 kb on - strand at 2390.405 kb on - strand at 2390.419 kb on + strand at 2390.420 kb on - strand at 2390.427 kb on - strand at 2390.441 kb on - strand at 2390.473 kb on - strand, within MPMX20_02279 at 2390.483 kb on + strand, within MPMX20_02279 at 2390.527 kb on - strand, within MPMX20_02279 at 2390.621 kb on + strand, within MPMX20_02279 at 2390.627 kb on - strand, within MPMX20_02279 at 2390.680 kb on + strand, within MPMX20_02279 at 2390.763 kb on + strand, within MPMX20_02279 at 2390.844 kb on + strand at 2390.869 kb on - strand at 2390.871 kb on + strand at 2390.890 kb on + strand at 2390.970 kb on + strand at 2391.106 kb on + strand, within MPMX20_02280 at 2391.106 kb on + strand, within MPMX20_02280 at 2391.106 kb on + strand, within MPMX20_02280 at 2391.205 kb on - strand, within MPMX20_02280 at 2391.222 kb on - strand, within MPMX20_02280 at 2391.254 kb on + strand, within MPMX20_02280 at 2391.319 kb on + strand, within MPMX20_02280 at 2391.319 kb on + strand, within MPMX20_02280 at 2391.327 kb on - strand, within MPMX20_02280 at 2391.327 kb on - strand, within MPMX20_02280 at 2391.328 kb on - strand, within MPMX20_02280 at 2391.349 kb on + strand, within MPMX20_02280 at 2391.357 kb on - strand, within MPMX20_02280 at 2391.389 kb on + strand, within MPMX20_02280 at 2391.462 kb on + strand, within MPMX20_02280 at 2391.468 kb on + strand, within MPMX20_02280 at 2391.476 kb on - strand, within MPMX20_02280 at 2391.527 kb on + strand, within MPMX20_02280 at 2391.577 kb on - strand, within MPMX20_02280 at 2391.605 kb on + strand, within MPMX20_02280 at 2391.615 kb on + strand, within MPMX20_02280 at 2391.622 kb on + strand, within MPMX20_02280 at 2391.630 kb on - strand, within MPMX20_02280 at 2391.684 kb on + strand, within MPMX20_02280 at 2391.684 kb on + strand, within MPMX20_02280 at 2391.684 kb on + strand, within MPMX20_02280 at 2391.701 kb on - strand, within MPMX20_02280 at 2391.709 kb on + strand, within MPMX20_02280 at 2391.731 kb on + strand, within MPMX20_02280 at 2391.838 kb on + strand, within MPMX20_02280 at 2391.851 kb on + strand, within MPMX20_02280 at 2391.854 kb on - strand, within MPMX20_02280 at 2391.856 kb on + strand, within MPMX20_02280 at 2391.859 kb on - strand, within MPMX20_02280 at 2391.859 kb on - strand, within MPMX20_02280 at 2391.859 kb on - strand, within MPMX20_02280 at 2391.864 kb on - strand, within MPMX20_02280 at 2391.864 kb on - strand, within MPMX20_02280 at 2391.914 kb on + strand at 2391.921 kb on + strand at 2392.083 kb on + strand at 2392.126 kb on - strand, within MPMX20_02281 at 2392.214 kb on + strand, within MPMX20_02281 at 2392.214 kb on + strand, within MPMX20_02281 at 2392.214 kb on + strand, within MPMX20_02281 at 2392.222 kb on - strand, within MPMX20_02281 at 2392.226 kb on + strand, within MPMX20_02281 at 2392.234 kb on - strand, within MPMX20_02281 at 2392.241 kb on - strand, within MPMX20_02281 at 2392.310 kb on - strand, within MPMX20_02281 at 2392.317 kb on + strand, within MPMX20_02281 at 2392.339 kb on - strand, within MPMX20_02281 at 2392.367 kb on - strand, within MPMX20_02281 at 2392.374 kb on + strand, within MPMX20_02281 at 2392.521 kb on - strand, within MPMX20_02281 at 2392.745 kb on + strand at 2392.753 kb on - strand at 2392.753 kb on - strand at 2392.758 kb on - strand at 2392.814 kb on + strand at 2392.822 kb on - strand at 2392.866 kb on + strand at 2392.874 kb on - strand at 2392.885 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,389,992 + MPMX20_02278 0.52 -1.1 2,390,031 + MPMX20_02278 0.59 -1.7 2,390,054 - MPMX20_02278 0.63 +0.5 2,390,054 - MPMX20_02278 0.63 -0.1 2,390,054 - MPMX20_02278 0.63 -0.7 2,390,054 - MPMX20_02278 0.63 +0.4 2,390,054 - MPMX20_02278 0.63 +3.1 2,390,097 + MPMX20_02278 0.71 -1.3 2,390,127 + MPMX20_02278 0.76 -1.6 2,390,127 + MPMX20_02278 0.76 +2.7 2,390,127 + MPMX20_02278 0.76 +0.8 2,390,127 + MPMX20_02278 0.76 +0.6 2,390,127 + MPMX20_02278 0.76 -2.5 2,390,127 + MPMX20_02278 0.76 -0.1 2,390,127 + MPMX20_02278 0.76 +1.0 2,390,127 + MPMX20_02278 0.76 +0.9 2,390,127 + MPMX20_02278 0.76 +0.3 2,390,127 + MPMX20_02278 0.76 +0.1 2,390,134 + MPMX20_02278 0.77 -0.8 2,390,134 - MPMX20_02278 0.77 -1.2 2,390,134 - MPMX20_02278 0.77 -0.2 2,390,134 - MPMX20_02278 0.77 -2.5 2,390,135 - MPMX20_02278 0.78 -0.0 2,390,135 - MPMX20_02278 0.78 +1.5 2,390,135 - MPMX20_02278 0.78 -1.4 2,390,135 - MPMX20_02278 0.78 +0.9 2,390,135 - MPMX20_02278 0.78 +1.5 2,390,135 - MPMX20_02278 0.78 +1.1 2,390,135 - MPMX20_02278 0.78 -1.9 2,390,135 - MPMX20_02278 0.78 -0.1 2,390,135 - MPMX20_02278 0.78 -1.0 2,390,135 - MPMX20_02278 0.78 -2.7 2,390,135 - MPMX20_02278 0.78 -0.7 2,390,135 - MPMX20_02278 0.78 +0.1 2,390,135 - MPMX20_02278 0.78 -0.9 2,390,135 - MPMX20_02278 0.78 -3.2 2,390,135 - MPMX20_02278 0.78 +0.4 2,390,135 - MPMX20_02278 0.78 -2.0 2,390,135 - MPMX20_02278 0.78 -0.4 2,390,135 - MPMX20_02278 0.78 +1.4 2,390,135 - MPMX20_02278 0.78 +1.8 2,390,135 - MPMX20_02278 0.78 -1.6 2,390,135 - MPMX20_02278 0.78 -0.3 2,390,135 - MPMX20_02278 0.78 -0.9 2,390,137 - MPMX20_02278 0.78 -1.3 2,390,142 - MPMX20_02278 0.79 -1.2 2,390,142 - MPMX20_02278 0.79 +2.3 2,390,142 - MPMX20_02278 0.79 -1.4 2,390,158 + MPMX20_02278 0.82 +0.4 2,390,172 + MPMX20_02278 0.84 +0.5 2,390,172 + MPMX20_02278 0.84 -1.9 2,390,172 + MPMX20_02278 0.84 -0.2 2,390,191 + MPMX20_02278 0.88 -1.4 2,390,202 + MPMX20_02278 0.90 -1.6 2,390,205 - +5.2 2,390,207 + +2.3 2,390,230 + +0.4 2,390,272 + -2.8 2,390,272 + +0.9 2,390,272 + -0.4 2,390,272 + +0.6 2,390,280 - +2.0 2,390,343 - +0.8 2,390,353 + -0.4 2,390,397 + +1.3 2,390,397 + +1.7 2,390,405 - -1.3 2,390,405 - -1.1 2,390,405 - +2.1 2,390,419 + +0.5 2,390,420 - -0.6 2,390,427 - -1.5 2,390,441 - -0.9 2,390,473 - MPMX20_02279 0.16 -0.8 2,390,483 + MPMX20_02279 0.19 -2.6 2,390,527 - MPMX20_02279 0.29 -1.3 2,390,621 + MPMX20_02279 0.50 +1.3 2,390,627 - MPMX20_02279 0.51 -2.3 2,390,680 + MPMX20_02279 0.63 -0.6 2,390,763 + MPMX20_02279 0.82 +2.4 2,390,844 + -1.1 2,390,869 - +2.3 2,390,871 + +1.4 2,390,890 + +0.9 2,390,970 + -0.3 2,391,106 + MPMX20_02280 0.12 +0.3 2,391,106 + MPMX20_02280 0.12 -0.0 2,391,106 + MPMX20_02280 0.12 +0.5 2,391,205 - MPMX20_02280 0.22 -2.2 2,391,222 - MPMX20_02280 0.24 +0.5 2,391,254 + MPMX20_02280 0.27 -0.1 2,391,319 + MPMX20_02280 0.33 -0.1 2,391,319 + MPMX20_02280 0.33 -2.0 2,391,327 - MPMX20_02280 0.34 -0.7 2,391,327 - MPMX20_02280 0.34 -1.8 2,391,328 - MPMX20_02280 0.34 -0.8 2,391,349 + MPMX20_02280 0.36 -1.4 2,391,357 - MPMX20_02280 0.37 -0.0 2,391,389 + MPMX20_02280 0.40 -0.2 2,391,462 + MPMX20_02280 0.48 -0.8 2,391,468 + MPMX20_02280 0.48 +1.9 2,391,476 - MPMX20_02280 0.49 -2.2 2,391,527 + MPMX20_02280 0.54 +0.3 2,391,577 - MPMX20_02280 0.59 -0.4 2,391,605 + MPMX20_02280 0.62 +0.1 2,391,615 + MPMX20_02280 0.63 -1.8 2,391,622 + MPMX20_02280 0.64 +0.3 2,391,630 - MPMX20_02280 0.65 -1.3 2,391,684 + MPMX20_02280 0.70 +1.7 2,391,684 + MPMX20_02280 0.70 -2.5 2,391,684 + MPMX20_02280 0.70 +0.5 2,391,701 - MPMX20_02280 0.72 -1.2 2,391,709 + MPMX20_02280 0.72 +0.9 2,391,731 + MPMX20_02280 0.75 -0.0 2,391,838 + MPMX20_02280 0.85 +0.1 2,391,851 + MPMX20_02280 0.87 +0.9 2,391,854 - MPMX20_02280 0.87 -2.4 2,391,856 + MPMX20_02280 0.87 -0.8 2,391,859 - MPMX20_02280 0.88 +0.0 2,391,859 - MPMX20_02280 0.88 -0.3 2,391,859 - MPMX20_02280 0.88 -0.6 2,391,864 - MPMX20_02280 0.88 -1.9 2,391,864 - MPMX20_02280 0.88 +1.3 2,391,914 + -1.1 2,391,921 + -3.1 2,392,083 + -1.5 2,392,126 - MPMX20_02281 0.13 -0.8 2,392,214 + MPMX20_02281 0.25 -0.6 2,392,214 + MPMX20_02281 0.25 +3.9 2,392,214 + MPMX20_02281 0.25 +1.1 2,392,222 - MPMX20_02281 0.26 -0.2 2,392,226 + MPMX20_02281 0.27 +0.8 2,392,234 - MPMX20_02281 0.28 -0.9 2,392,241 - MPMX20_02281 0.29 +4.9 2,392,310 - MPMX20_02281 0.38 -1.3 2,392,317 + MPMX20_02281 0.39 +0.1 2,392,339 - MPMX20_02281 0.42 +1.4 2,392,367 - MPMX20_02281 0.46 -2.4 2,392,374 + MPMX20_02281 0.47 -0.9 2,392,521 - MPMX20_02281 0.67 -1.6 2,392,745 + -2.3 2,392,753 - +1.3 2,392,753 - -1.1 2,392,758 - -0.7 2,392,814 + -1.3 2,392,822 - +0.6 2,392,866 + -3.7 2,392,874 - +0.6 2,392,885 + +1.1
Or see this region's nucleotide sequence