Experiment: M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01538 and MPMX20_01539 overlap by 4 nucleotides MPMX20_01539 and MPMX20_01540 are separated by 159 nucleotides
MPMX20_01538: MPMX20_01538 - hypothetical protein, at 1,608,616 to 1,610,274
_01538
MPMX20_01539: MPMX20_01539 - hypothetical protein, at 1,610,271 to 1,611,227
_01539
MPMX20_01540: MPMX20_01540 - Macrolide export protein MacA, at 1,611,387 to 1,612,502
_01540
Position (kb)
1610
1611
1612 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1609.289 kb on + strand, within MPMX20_01538 at 1609.292 kb on - strand, within MPMX20_01538 at 1609.292 kb on - strand, within MPMX20_01538 at 1609.297 kb on - strand, within MPMX20_01538 at 1609.333 kb on + strand, within MPMX20_01538 at 1609.333 kb on + strand, within MPMX20_01538 at 1609.382 kb on + strand, within MPMX20_01538 at 1609.382 kb on + strand, within MPMX20_01538 at 1609.443 kb on + strand, within MPMX20_01538 at 1609.448 kb on - strand, within MPMX20_01538 at 1609.524 kb on + strand, within MPMX20_01538 at 1609.524 kb on + strand, within MPMX20_01538 at 1609.566 kb on - strand, within MPMX20_01538 at 1609.585 kb on - strand, within MPMX20_01538 at 1609.620 kb on - strand, within MPMX20_01538 at 1609.664 kb on + strand, within MPMX20_01538 at 1609.749 kb on - strand, within MPMX20_01538 at 1609.838 kb on + strand, within MPMX20_01538 at 1609.838 kb on + strand, within MPMX20_01538 at 1609.964 kb on + strand, within MPMX20_01538 at 1610.269 kb on + strand at 1610.287 kb on + strand at 1610.296 kb on - strand at 1610.372 kb on + strand, within MPMX20_01539 at 1610.438 kb on + strand, within MPMX20_01539 at 1610.446 kb on - strand, within MPMX20_01539 at 1610.515 kb on + strand, within MPMX20_01539 at 1610.515 kb on + strand, within MPMX20_01539 at 1610.523 kb on - strand, within MPMX20_01539 at 1610.523 kb on - strand, within MPMX20_01539 at 1610.623 kb on + strand, within MPMX20_01539 at 1610.631 kb on - strand, within MPMX20_01539 at 1610.679 kb on - strand, within MPMX20_01539 at 1610.716 kb on - strand, within MPMX20_01539 at 1610.716 kb on - strand, within MPMX20_01539 at 1610.716 kb on - strand, within MPMX20_01539 at 1610.716 kb on - strand, within MPMX20_01539 at 1610.737 kb on + strand, within MPMX20_01539 at 1610.794 kb on + strand, within MPMX20_01539 at 1610.801 kb on + strand, within MPMX20_01539 at 1610.802 kb on - strand, within MPMX20_01539 at 1610.807 kb on + strand, within MPMX20_01539 at 1610.846 kb on + strand, within MPMX20_01539 at 1610.846 kb on + strand, within MPMX20_01539 at 1610.872 kb on + strand, within MPMX20_01539 at 1610.872 kb on + strand, within MPMX20_01539 at 1610.874 kb on - strand, within MPMX20_01539 at 1610.880 kb on - strand, within MPMX20_01539 at 1610.880 kb on - strand, within MPMX20_01539 at 1610.880 kb on - strand, within MPMX20_01539 at 1610.880 kb on - strand, within MPMX20_01539 at 1610.895 kb on - strand, within MPMX20_01539 at 1611.063 kb on + strand, within MPMX20_01539 at 1611.069 kb on - strand, within MPMX20_01539 at 1611.070 kb on + strand, within MPMX20_01539 at 1611.126 kb on - strand, within MPMX20_01539 at 1611.157 kb on + strand at 1611.158 kb on - strand at 1611.165 kb on - strand at 1611.184 kb on + strand at 1611.186 kb on - strand at 1611.186 kb on - strand at 1611.227 kb on + strand at 1611.392 kb on + strand at 1611.392 kb on + strand at 1611.451 kb on + strand at 1611.457 kb on + strand at 1611.457 kb on + strand at 1611.459 kb on - strand at 1611.460 kb on - strand at 1611.460 kb on - strand at 1611.478 kb on + strand at 1611.481 kb on + strand at 1611.486 kb on - strand at 1611.491 kb on - strand at 1611.491 kb on - strand at 1611.491 kb on - strand at 1611.493 kb on + strand at 1611.501 kb on + strand, within MPMX20_01540 at 1611.563 kb on + strand, within MPMX20_01540 at 1611.563 kb on + strand, within MPMX20_01540 at 1611.571 kb on - strand, within MPMX20_01540 at 1611.571 kb on - strand, within MPMX20_01540 at 1611.576 kb on - strand, within MPMX20_01540 at 1611.587 kb on + strand, within MPMX20_01540 at 1611.587 kb on + strand, within MPMX20_01540 at 1611.587 kb on + strand, within MPMX20_01540 at 1611.595 kb on - strand, within MPMX20_01540 at 1611.607 kb on - strand, within MPMX20_01540 at 1611.664 kb on + strand, within MPMX20_01540 at 1611.689 kb on - strand, within MPMX20_01540 at 1611.737 kb on + strand, within MPMX20_01540 at 1611.751 kb on - strand, within MPMX20_01540 at 1611.762 kb on - strand, within MPMX20_01540 at 1611.772 kb on - strand, within MPMX20_01540 at 1611.786 kb on + strand, within MPMX20_01540 at 1611.803 kb on + strand, within MPMX20_01540 at 1611.819 kb on + strand, within MPMX20_01540 at 1611.892 kb on - strand, within MPMX20_01540 at 1611.893 kb on + strand, within MPMX20_01540 at 1611.948 kb on - strand, within MPMX20_01540 at 1611.992 kb on - strand, within MPMX20_01540 at 1612.043 kb on + strand, within MPMX20_01540 at 1612.058 kb on + strand, within MPMX20_01540 at 1612.070 kb on + strand, within MPMX20_01540 at 1612.113 kb on + strand, within MPMX20_01540 at 1612.145 kb on - strand, within MPMX20_01540 at 1612.156 kb on - strand, within MPMX20_01540 at 1612.205 kb on + strand, within MPMX20_01540 at 1612.213 kb on - strand, within MPMX20_01540
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,609,289 + MPMX20_01538 0.41 -0.0 1,609,292 - MPMX20_01538 0.41 -0.8 1,609,292 - MPMX20_01538 0.41 +2.2 1,609,297 - MPMX20_01538 0.41 +0.0 1,609,333 + MPMX20_01538 0.43 +0.1 1,609,333 + MPMX20_01538 0.43 +0.5 1,609,382 + MPMX20_01538 0.46 -1.8 1,609,382 + MPMX20_01538 0.46 -0.1 1,609,443 + MPMX20_01538 0.50 -0.9 1,609,448 - MPMX20_01538 0.50 -0.1 1,609,524 + MPMX20_01538 0.55 -0.5 1,609,524 + MPMX20_01538 0.55 -1.1 1,609,566 - MPMX20_01538 0.57 -2.8 1,609,585 - MPMX20_01538 0.58 -0.1 1,609,620 - MPMX20_01538 0.61 +0.9 1,609,664 + MPMX20_01538 0.63 -0.6 1,609,749 - MPMX20_01538 0.68 -1.9 1,609,838 + MPMX20_01538 0.74 +0.9 1,609,838 + MPMX20_01538 0.74 -1.2 1,609,964 + MPMX20_01538 0.81 +0.2 1,610,269 + +0.8 1,610,287 + -0.4 1,610,296 - +0.7 1,610,372 + MPMX20_01539 0.11 -0.9 1,610,438 + MPMX20_01539 0.17 -1.5 1,610,446 - MPMX20_01539 0.18 +2.2 1,610,515 + MPMX20_01539 0.25 +0.0 1,610,515 + MPMX20_01539 0.25 -0.6 1,610,523 - MPMX20_01539 0.26 -0.5 1,610,523 - MPMX20_01539 0.26 -1.5 1,610,623 + MPMX20_01539 0.37 +2.7 1,610,631 - MPMX20_01539 0.38 +1.2 1,610,679 - MPMX20_01539 0.43 +0.0 1,610,716 - MPMX20_01539 0.46 +2.2 1,610,716 - MPMX20_01539 0.46 -0.4 1,610,716 - MPMX20_01539 0.46 -0.6 1,610,716 - MPMX20_01539 0.46 +0.2 1,610,737 + MPMX20_01539 0.49 -1.0 1,610,794 + MPMX20_01539 0.55 +0.9 1,610,801 + MPMX20_01539 0.55 -0.5 1,610,802 - MPMX20_01539 0.55 -0.6 1,610,807 + MPMX20_01539 0.56 +1.4 1,610,846 + MPMX20_01539 0.60 +5.6 1,610,846 + MPMX20_01539 0.60 -1.3 1,610,872 + MPMX20_01539 0.63 +0.8 1,610,872 + MPMX20_01539 0.63 +1.1 1,610,874 - MPMX20_01539 0.63 -0.8 1,610,880 - MPMX20_01539 0.64 +0.6 1,610,880 - MPMX20_01539 0.64 -0.4 1,610,880 - MPMX20_01539 0.64 +0.7 1,610,880 - MPMX20_01539 0.64 +0.1 1,610,895 - MPMX20_01539 0.65 +4.6 1,611,063 + MPMX20_01539 0.83 +1.2 1,611,069 - MPMX20_01539 0.83 -0.9 1,611,070 + MPMX20_01539 0.83 -1.9 1,611,126 - MPMX20_01539 0.89 +0.9 1,611,157 + -2.3 1,611,158 - -2.9 1,611,165 - -0.1 1,611,184 + -0.1 1,611,186 - +0.2 1,611,186 - +1.2 1,611,227 + -0.7 1,611,392 + -1.9 1,611,392 + -1.9 1,611,451 + -0.6 1,611,457 + -1.5 1,611,457 + -1.6 1,611,459 - +0.4 1,611,460 - -0.3 1,611,460 - +2.2 1,611,478 + +1.7 1,611,481 + +0.9 1,611,486 - +0.9 1,611,491 - -1.9 1,611,491 - -1.4 1,611,491 - -3.7 1,611,493 + +0.0 1,611,501 + MPMX20_01540 0.10 -0.0 1,611,563 + MPMX20_01540 0.16 +1.8 1,611,563 + MPMX20_01540 0.16 -0.3 1,611,571 - MPMX20_01540 0.16 -0.5 1,611,571 - MPMX20_01540 0.16 -0.8 1,611,576 - MPMX20_01540 0.17 +0.9 1,611,587 + MPMX20_01540 0.18 +0.0 1,611,587 + MPMX20_01540 0.18 +1.3 1,611,587 + MPMX20_01540 0.18 -0.6 1,611,595 - MPMX20_01540 0.19 +6.0 1,611,607 - MPMX20_01540 0.20 -0.2 1,611,664 + MPMX20_01540 0.25 +2.7 1,611,689 - MPMX20_01540 0.27 -0.2 1,611,737 + MPMX20_01540 0.31 -0.8 1,611,751 - MPMX20_01540 0.33 +0.9 1,611,762 - MPMX20_01540 0.34 +1.1 1,611,772 - MPMX20_01540 0.34 -1.3 1,611,786 + MPMX20_01540 0.36 +0.5 1,611,803 + MPMX20_01540 0.37 -0.3 1,611,819 + MPMX20_01540 0.39 +0.6 1,611,892 - MPMX20_01540 0.45 +1.5 1,611,893 + MPMX20_01540 0.45 -0.2 1,611,948 - MPMX20_01540 0.50 -2.4 1,611,992 - MPMX20_01540 0.54 +0.3 1,612,043 + MPMX20_01540 0.59 -0.3 1,612,058 + MPMX20_01540 0.60 +2.4 1,612,070 + MPMX20_01540 0.61 -1.8 1,612,113 + MPMX20_01540 0.65 +0.1 1,612,145 - MPMX20_01540 0.68 -0.5 1,612,156 - MPMX20_01540 0.69 -0.6 1,612,205 + MPMX20_01540 0.73 +0.2 1,612,213 - MPMX20_01540 0.74 -0.6
Or see this region's nucleotide sequence