Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01015

Experiment: M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01014 and MPMX20_01015 are separated by 45 nucleotidesMPMX20_01015 and MPMX20_01016 overlap by 38 nucleotides MPMX20_01014: MPMX20_01014 - tRNA sulfurtransferase, at 1,066,740 to 1,068,188 _01014 MPMX20_01015: MPMX20_01015 - Protein/nucleic acid deglycase 3, at 1,068,234 to 1,068,827 _01015 MPMX20_01016: MPMX20_01016 - 2-dehydropantoate 2-reductase, at 1,068,790 to 1,069,701 _01016 Position (kb) 1068 1069Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1067.320 kb on + strand, within MPMX20_01014at 1067.331 kb on - strand, within MPMX20_01014at 1067.360 kb on - strand, within MPMX20_01014at 1067.380 kb on - strand, within MPMX20_01014at 1067.426 kb on - strand, within MPMX20_01014at 1067.534 kb on - strand, within MPMX20_01014at 1067.570 kb on + strand, within MPMX20_01014at 1067.570 kb on + strand, within MPMX20_01014at 1067.578 kb on - strand, within MPMX20_01014at 1067.604 kb on + strand, within MPMX20_01014at 1067.610 kb on + strand, within MPMX20_01014at 1067.623 kb on + strand, within MPMX20_01014at 1068.073 kb on + strandat 1068.081 kb on - strandat 1068.106 kb on - strandat 1068.117 kb on + strandat 1068.117 kb on + strandat 1068.117 kb on + strandat 1068.150 kb on + strandat 1068.181 kb on - strandat 1068.239 kb on - strandat 1068.288 kb on + strandat 1068.454 kb on + strand, within MPMX20_01015at 1068.533 kb on - strand, within MPMX20_01015at 1068.614 kb on + strand, within MPMX20_01015at 1068.677 kb on - strand, within MPMX20_01015at 1068.783 kb on - strandat 1068.810 kb on - strandat 1068.820 kb on - strandat 1068.833 kb on - strandat 1068.837 kb on + strandat 1068.837 kb on + strandat 1068.850 kb on - strandat 1068.922 kb on + strand, within MPMX20_01016at 1069.018 kb on + strand, within MPMX20_01016at 1069.074 kb on - strand, within MPMX20_01016at 1069.207 kb on - strand, within MPMX20_01016at 1069.207 kb on - strand, within MPMX20_01016at 1069.379 kb on + strand, within MPMX20_01016at 1069.379 kb on + strand, within MPMX20_01016at 1069.422 kb on + strand, within MPMX20_01016at 1069.422 kb on + strand, within MPMX20_01016at 1069.472 kb on + strand, within MPMX20_01016at 1069.484 kb on + strand, within MPMX20_01016at 1069.560 kb on - strand, within MPMX20_01016at 1069.589 kb on - strand, within MPMX20_01016at 1069.597 kb on + strand, within MPMX20_01016at 1069.605 kb on - strand, within MPMX20_01016at 1069.605 kb on - strand, within MPMX20_01016at 1069.618 kb on + strandat 1069.618 kb on + strandat 1069.618 kb on + strandat 1069.618 kb on + strandat 1069.618 kb on + strandat 1069.626 kb on + strandat 1069.626 kb on - strandat 1069.626 kb on - strandat 1069.626 kb on - strandat 1069.655 kb on + strandat 1069.663 kb on - strandat 1069.663 kb on - strandat 1069.673 kb on - strandat 1069.673 kb on - strandat 1069.679 kb on + strandat 1069.687 kb on - strandat 1069.744 kb on + strandat 1069.797 kb on + strandat 1069.801 kb on + strandat 1069.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,067,320 + MPMX20_01014 0.40 +0.7
1,067,331 - MPMX20_01014 0.41 +0.4
1,067,360 - MPMX20_01014 0.43 -0.5
1,067,380 - MPMX20_01014 0.44 +1.0
1,067,426 - MPMX20_01014 0.47 -2.3
1,067,534 - MPMX20_01014 0.55 -0.3
1,067,570 + MPMX20_01014 0.57 -3.1
1,067,570 + MPMX20_01014 0.57 +0.2
1,067,578 - MPMX20_01014 0.58 +2.0
1,067,604 + MPMX20_01014 0.60 +0.0
1,067,610 + MPMX20_01014 0.60 -1.4
1,067,623 + MPMX20_01014 0.61 -1.6
1,068,073 + +0.0
1,068,081 - +0.4
1,068,106 - -3.1
1,068,117 + -0.3
1,068,117 + +1.4
1,068,117 + +1.1
1,068,150 + -2.2
1,068,181 - -0.7
1,068,239 - -1.8
1,068,288 + +2.0
1,068,454 + MPMX20_01015 0.37 -0.6
1,068,533 - MPMX20_01015 0.50 -2.9
1,068,614 + MPMX20_01015 0.64 -1.7
1,068,677 - MPMX20_01015 0.75 +0.4
1,068,783 - -1.2
1,068,810 - +0.1
1,068,820 - -2.9
1,068,833 - -0.6
1,068,837 + -2.6
1,068,837 + -2.8
1,068,850 - -0.3
1,068,922 + MPMX20_01016 0.14 +0.3
1,069,018 + MPMX20_01016 0.25 -0.0
1,069,074 - MPMX20_01016 0.31 -2.9
1,069,207 - MPMX20_01016 0.46 +2.2
1,069,207 - MPMX20_01016 0.46 +2.0
1,069,379 + MPMX20_01016 0.65 +0.3
1,069,379 + MPMX20_01016 0.65 -2.4
1,069,422 + MPMX20_01016 0.69 +1.7
1,069,422 + MPMX20_01016 0.69 -0.5
1,069,472 + MPMX20_01016 0.75 +2.2
1,069,484 + MPMX20_01016 0.76 -1.7
1,069,560 - MPMX20_01016 0.84 +1.0
1,069,589 - MPMX20_01016 0.88 +2.1
1,069,597 + MPMX20_01016 0.88 +0.4
1,069,605 - MPMX20_01016 0.89 -0.2
1,069,605 - MPMX20_01016 0.89 -0.9
1,069,618 + +0.4
1,069,618 + -0.2
1,069,618 + -0.2
1,069,618 + -0.1
1,069,618 + -2.6
1,069,626 + +4.0
1,069,626 - +0.3
1,069,626 - +0.3
1,069,626 - -1.0
1,069,655 + -1.6
1,069,663 - -1.4
1,069,663 - +2.0
1,069,673 - -0.3
1,069,673 - +0.6
1,069,679 + -0.1
1,069,687 - +0.2
1,069,744 + -0.7
1,069,797 + -0.6
1,069,801 + +1.3
1,069,816 + +1.1

Or see this region's nucleotide sequence