Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00748

Experiment: M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00746 and MPMX20_00747 are separated by 3 nucleotidesMPMX20_00747 and MPMX20_00748 overlap by 4 nucleotidesMPMX20_00748 and MPMX20_00749 overlap by 1 nucleotides MPMX20_00746: MPMX20_00746 - Protein ApaG, at 771,889 to 772,266 _00746 MPMX20_00747: MPMX20_00747 - Ribosomal RNA small subunit methyltransferase A, at 772,270 to 773,091 _00747 MPMX20_00748: MPMX20_00748 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 773,088 to 774,074 _00748 MPMX20_00749: MPMX20_00749 - Chaperone SurA, at 774,074 to 775,360 _00749 Position (kb) 773 774 775Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 772.132 kb on + strand, within MPMX20_00746at 772.268 kb on + strandat 772.276 kb on - strandat 772.321 kb on + strandat 772.329 kb on - strandat 772.329 kb on - strandat 772.442 kb on - strand, within MPMX20_00747at 772.442 kb on - strand, within MPMX20_00747at 772.459 kb on - strand, within MPMX20_00747at 772.473 kb on + strand, within MPMX20_00747at 772.506 kb on + strand, within MPMX20_00747at 772.506 kb on + strand, within MPMX20_00747at 772.526 kb on - strand, within MPMX20_00747at 772.528 kb on + strand, within MPMX20_00747at 772.553 kb on - strand, within MPMX20_00747at 772.573 kb on - strand, within MPMX20_00747at 772.626 kb on - strand, within MPMX20_00747at 772.626 kb on - strand, within MPMX20_00747at 772.724 kb on - strand, within MPMX20_00747at 772.877 kb on - strand, within MPMX20_00747at 772.920 kb on - strand, within MPMX20_00747at 772.939 kb on - strand, within MPMX20_00747at 772.944 kb on - strand, within MPMX20_00747at 772.953 kb on - strand, within MPMX20_00747at 772.980 kb on - strand, within MPMX20_00747at 773.071 kb on - strandat 773.076 kb on - strandat 773.152 kb on + strandat 773.155 kb on - strandat 773.157 kb on + strandat 773.157 kb on + strandat 773.157 kb on + strandat 773.157 kb on + strandat 773.177 kb on + strandat 773.180 kb on - strandat 773.182 kb on + strandat 773.249 kb on - strand, within MPMX20_00748at 773.249 kb on - strand, within MPMX20_00748at 773.255 kb on - strand, within MPMX20_00748at 773.335 kb on - strand, within MPMX20_00748at 773.360 kb on + strand, within MPMX20_00748at 773.369 kb on - strand, within MPMX20_00748at 773.450 kb on + strand, within MPMX20_00748at 773.463 kb on + strand, within MPMX20_00748at 773.546 kb on + strand, within MPMX20_00748at 773.554 kb on - strand, within MPMX20_00748at 773.561 kb on + strand, within MPMX20_00748at 773.633 kb on + strand, within MPMX20_00748at 773.641 kb on - strand, within MPMX20_00748at 773.694 kb on - strand, within MPMX20_00748at 773.806 kb on + strand, within MPMX20_00748at 773.855 kb on + strand, within MPMX20_00748at 773.855 kb on + strand, within MPMX20_00748at 773.899 kb on - strand, within MPMX20_00748at 773.907 kb on - strand, within MPMX20_00748at 773.914 kb on + strand, within MPMX20_00748at 773.933 kb on + strand, within MPMX20_00748at 774.061 kb on - strandat 774.273 kb on - strand, within MPMX20_00749at 774.360 kb on - strand, within MPMX20_00749at 774.474 kb on + strand, within MPMX20_00749at 774.480 kb on + strand, within MPMX20_00749at 774.483 kb on - strand, within MPMX20_00749at 774.524 kb on - strand, within MPMX20_00749at 774.574 kb on + strand, within MPMX20_00749at 774.746 kb on - strand, within MPMX20_00749at 774.790 kb on + strand, within MPMX20_00749at 774.904 kb on + strand, within MPMX20_00749at 775.024 kb on + strand, within MPMX20_00749at 775.030 kb on + strand, within MPMX20_00749at 775.032 kb on - strand, within MPMX20_00749at 775.055 kb on + strand, within MPMX20_00749

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
772,132 + MPMX20_00746 0.64 -0.9
772,268 + +0.5
772,276 - +1.1
772,321 + -1.9
772,329 - -3.4
772,329 - +1.1
772,442 - MPMX20_00747 0.21 -0.7
772,442 - MPMX20_00747 0.21 -0.9
772,459 - MPMX20_00747 0.23 -1.1
772,473 + MPMX20_00747 0.25 -0.3
772,506 + MPMX20_00747 0.29 -1.6
772,506 + MPMX20_00747 0.29 -1.3
772,526 - MPMX20_00747 0.31 -1.7
772,528 + MPMX20_00747 0.31 -1.6
772,553 - MPMX20_00747 0.34 -1.9
772,573 - MPMX20_00747 0.37 +1.6
772,626 - MPMX20_00747 0.43 -0.8
772,626 - MPMX20_00747 0.43 -4.5
772,724 - MPMX20_00747 0.55 +0.5
772,877 - MPMX20_00747 0.74 -1.8
772,920 - MPMX20_00747 0.79 -0.5
772,939 - MPMX20_00747 0.81 -2.1
772,944 - MPMX20_00747 0.82 -1.1
772,953 - MPMX20_00747 0.83 -0.5
772,980 - MPMX20_00747 0.86 +0.1
773,071 - -2.4
773,076 - -0.5
773,152 + -2.0
773,155 - -1.3
773,157 + -2.3
773,157 + -2.3
773,157 + -1.3
773,157 + +0.5
773,177 + -4.0
773,180 - -0.3
773,182 + +0.5
773,249 - MPMX20_00748 0.16 -0.5
773,249 - MPMX20_00748 0.16 -3.6
773,255 - MPMX20_00748 0.17 -2.6
773,335 - MPMX20_00748 0.25 -2.9
773,360 + MPMX20_00748 0.28 -1.7
773,369 - MPMX20_00748 0.28 +1.1
773,450 + MPMX20_00748 0.37 -0.3
773,463 + MPMX20_00748 0.38 -1.5
773,546 + MPMX20_00748 0.46 -1.3
773,554 - MPMX20_00748 0.47 -1.9
773,561 + MPMX20_00748 0.48 -0.7
773,633 + MPMX20_00748 0.55 -0.7
773,641 - MPMX20_00748 0.56 -3.2
773,694 - MPMX20_00748 0.61 -3.0
773,806 + MPMX20_00748 0.73 +0.5
773,855 + MPMX20_00748 0.78 -1.4
773,855 + MPMX20_00748 0.78 -1.8
773,899 - MPMX20_00748 0.82 -2.6
773,907 - MPMX20_00748 0.83 -2.6
773,914 + MPMX20_00748 0.84 -1.7
773,933 + MPMX20_00748 0.86 -1.2
774,061 - -2.2
774,273 - MPMX20_00749 0.15 +0.5
774,360 - MPMX20_00749 0.22 +0.3
774,474 + MPMX20_00749 0.31 -2.8
774,480 + MPMX20_00749 0.32 -0.5
774,483 - MPMX20_00749 0.32 -0.9
774,524 - MPMX20_00749 0.35 -1.8
774,574 + MPMX20_00749 0.39 -0.7
774,746 - MPMX20_00749 0.52 +1.1
774,790 + MPMX20_00749 0.56 -2.2
774,904 + MPMX20_00749 0.64 -2.0
775,024 + MPMX20_00749 0.74 -2.0
775,030 + MPMX20_00749 0.74 +1.1
775,032 - MPMX20_00749 0.74 -2.4
775,055 + MPMX20_00749 0.76 -2.8

Or see this region's nucleotide sequence