Experiment: 1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02260 and MPMX20_02261 are separated by 256 nucleotides MPMX20_02261 and MPMX20_02262 are separated by 58 nucleotides MPMX20_02262 and MPMX20_02263 are separated by 177 nucleotides MPMX20_02263 and MPMX20_02264 are separated by 27 nucleotides
MPMX20_02260: MPMX20_02260 - Multiple antibiotic resistance protein MarR, at 2,371,453 to 2,371,887
_02260
MPMX20_02261: MPMX20_02261 - hypothetical protein, at 2,372,144 to 2,372,809
_02261
MPMX20_02262: MPMX20_02262 - Sugar efflux transporter, at 2,372,868 to 2,374,064
_02262
MPMX20_02263: MPMX20_02263 - hypothetical protein, at 2,374,242 to 2,375,030
_02263
MPMX20_02264: MPMX20_02264 - hypothetical protein, at 2,375,058 to 2,375,858
_02264
Position (kb)
2372
2373
2374
2375 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2371.959 kb on + strand at 2371.959 kb on + strand at 2372.043 kb on - strand at 2372.087 kb on - strand at 2372.091 kb on + strand at 2372.093 kb on - strand at 2372.107 kb on - strand at 2372.124 kb on + strand at 2372.132 kb on - strand at 2372.137 kb on - strand at 2372.137 kb on - strand at 2372.152 kb on - strand at 2372.168 kb on + strand at 2372.176 kb on - strand at 2372.177 kb on - strand at 2372.177 kb on - strand at 2372.177 kb on - strand at 2372.197 kb on + strand at 2372.200 kb on - strand at 2372.224 kb on + strand, within MPMX20_02261 at 2372.226 kb on + strand, within MPMX20_02261 at 2372.234 kb on - strand, within MPMX20_02261 at 2372.243 kb on + strand, within MPMX20_02261 at 2372.272 kb on + strand, within MPMX20_02261 at 2372.288 kb on + strand, within MPMX20_02261 at 2372.371 kb on + strand, within MPMX20_02261 at 2372.442 kb on + strand, within MPMX20_02261 at 2372.454 kb on - strand, within MPMX20_02261 at 2372.481 kb on - strand, within MPMX20_02261 at 2372.526 kb on + strand, within MPMX20_02261 at 2372.585 kb on + strand, within MPMX20_02261 at 2372.593 kb on - strand, within MPMX20_02261 at 2372.604 kb on + strand, within MPMX20_02261 at 2372.671 kb on - strand, within MPMX20_02261 at 2372.671 kb on - strand, within MPMX20_02261 at 2372.673 kb on + strand, within MPMX20_02261 at 2372.673 kb on + strand, within MPMX20_02261 at 2372.673 kb on + strand, within MPMX20_02261 at 2372.673 kb on + strand, within MPMX20_02261 at 2372.673 kb on + strand, within MPMX20_02261 at 2372.673 kb on + strand, within MPMX20_02261 at 2372.681 kb on - strand, within MPMX20_02261 at 2372.681 kb on - strand, within MPMX20_02261 at 2372.681 kb on - strand, within MPMX20_02261 at 2372.681 kb on - strand, within MPMX20_02261 at 2372.712 kb on - strand, within MPMX20_02261 at 2372.712 kb on - strand, within MPMX20_02261 at 2372.749 kb on + strand at 2372.749 kb on + strand at 2372.749 kb on + strand at 2372.786 kb on - strand at 2372.790 kb on - strand at 2372.791 kb on + strand at 2372.827 kb on - strand at 2372.916 kb on + strand at 2372.926 kb on + strand at 2372.934 kb on - strand at 2372.939 kb on - strand at 2372.965 kb on - strand at 2373.134 kb on + strand, within MPMX20_02262 at 2373.139 kb on + strand, within MPMX20_02262 at 2373.139 kb on + strand, within MPMX20_02262 at 2373.139 kb on + strand, within MPMX20_02262 at 2373.139 kb on + strand, within MPMX20_02262 at 2373.139 kb on + strand, within MPMX20_02262 at 2373.139 kb on + strand, within MPMX20_02262 at 2373.139 kb on + strand, within MPMX20_02262 at 2373.147 kb on - strand, within MPMX20_02262 at 2373.147 kb on - strand, within MPMX20_02262 at 2373.147 kb on - strand, within MPMX20_02262 at 2373.147 kb on - strand, within MPMX20_02262 at 2373.147 kb on - strand, within MPMX20_02262 at 2373.147 kb on - strand, within MPMX20_02262 at 2373.147 kb on - strand, within MPMX20_02262 at 2373.149 kb on + strand, within MPMX20_02262 at 2373.149 kb on + strand, within MPMX20_02262 at 2373.157 kb on - strand, within MPMX20_02262 at 2373.160 kb on + strand, within MPMX20_02262 at 2373.190 kb on - strand, within MPMX20_02262 at 2373.198 kb on + strand, within MPMX20_02262 at 2373.229 kb on + strand, within MPMX20_02262 at 2373.237 kb on - strand, within MPMX20_02262 at 2373.237 kb on - strand, within MPMX20_02262 at 2373.239 kb on + strand, within MPMX20_02262 at 2373.239 kb on + strand, within MPMX20_02262 at 2373.247 kb on - strand, within MPMX20_02262 at 2373.287 kb on - strand, within MPMX20_02262 at 2373.365 kb on + strand, within MPMX20_02262 at 2373.368 kb on + strand, within MPMX20_02262 at 2373.375 kb on + strand, within MPMX20_02262 at 2373.383 kb on - strand, within MPMX20_02262 at 2373.383 kb on - strand, within MPMX20_02262 at 2373.384 kb on + strand, within MPMX20_02262 at 2373.384 kb on + strand, within MPMX20_02262 at 2373.385 kb on + strand, within MPMX20_02262 at 2373.393 kb on - strand, within MPMX20_02262 at 2373.606 kb on + strand, within MPMX20_02262 at 2373.606 kb on + strand, within MPMX20_02262 at 2373.614 kb on - strand, within MPMX20_02262 at 2373.614 kb on - strand, within MPMX20_02262 at 2373.711 kb on + strand, within MPMX20_02262 at 2373.839 kb on + strand, within MPMX20_02262 at 2373.857 kb on + strand, within MPMX20_02262 at 2373.873 kb on + strand, within MPMX20_02262 at 2373.873 kb on + strand, within MPMX20_02262 at 2373.895 kb on - strand, within MPMX20_02262 at 2373.900 kb on + strand, within MPMX20_02262 at 2373.905 kb on + strand, within MPMX20_02262 at 2373.905 kb on + strand, within MPMX20_02262 at 2373.908 kb on - strand, within MPMX20_02262 at 2373.910 kb on + strand, within MPMX20_02262 at 2373.913 kb on - strand, within MPMX20_02262 at 2373.970 kb on - strand at 2374.043 kb on + strand at 2374.049 kb on - strand at 2374.347 kb on + strand, within MPMX20_02263 at 2374.347 kb on - strand, within MPMX20_02263 at 2374.357 kb on - strand, within MPMX20_02263 at 2374.362 kb on - strand, within MPMX20_02263 at 2374.367 kb on + strand, within MPMX20_02263 at 2374.424 kb on - strand, within MPMX20_02263 at 2374.451 kb on + strand, within MPMX20_02263 at 2374.479 kb on + strand, within MPMX20_02263 at 2374.487 kb on - strand, within MPMX20_02263 at 2374.502 kb on + strand, within MPMX20_02263 at 2374.510 kb on - strand, within MPMX20_02263 at 2374.555 kb on - strand, within MPMX20_02263 at 2374.679 kb on + strand, within MPMX20_02263 at 2374.712 kb on + strand, within MPMX20_02263 at 2374.845 kb on - strand, within MPMX20_02263 at 2374.850 kb on + strand, within MPMX20_02263 at 2374.858 kb on - strand, within MPMX20_02263 at 2374.919 kb on - strand, within MPMX20_02263 at 2374.925 kb on + strand, within MPMX20_02263 at 2374.944 kb on + strand, within MPMX20_02263 at 2374.944 kb on + strand, within MPMX20_02263 at 2374.950 kb on - strand, within MPMX20_02263 at 2374.966 kb on - strand at 2374.991 kb on + strand at 2374.992 kb on + strand at 2374.995 kb on - strand at 2375.046 kb on + strand at 2375.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,371,959 + +0.6 2,371,959 + -0.9 2,372,043 - -0.2 2,372,087 - +0.2 2,372,091 + -1.0 2,372,093 - +6.5 2,372,107 - -1.0 2,372,124 + -0.2 2,372,132 - -2.0 2,372,137 - +0.8 2,372,137 - -1.9 2,372,152 - -0.3 2,372,168 + +0.4 2,372,176 - +0.1 2,372,177 - -0.5 2,372,177 - -1.5 2,372,177 - -0.2 2,372,197 + +0.1 2,372,200 - +0.9 2,372,224 + MPMX20_02261 0.12 -0.1 2,372,226 + MPMX20_02261 0.12 +1.1 2,372,234 - MPMX20_02261 0.14 +0.5 2,372,243 + MPMX20_02261 0.15 -0.6 2,372,272 + MPMX20_02261 0.19 -0.0 2,372,288 + MPMX20_02261 0.22 -0.1 2,372,371 + MPMX20_02261 0.34 -0.5 2,372,442 + MPMX20_02261 0.45 +0.3 2,372,454 - MPMX20_02261 0.47 -1.6 2,372,481 - MPMX20_02261 0.51 +2.0 2,372,526 + MPMX20_02261 0.57 -1.1 2,372,585 + MPMX20_02261 0.66 -1.1 2,372,593 - MPMX20_02261 0.67 +0.4 2,372,604 + MPMX20_02261 0.69 -1.0 2,372,671 - MPMX20_02261 0.79 -1.1 2,372,671 - MPMX20_02261 0.79 +0.0 2,372,673 + MPMX20_02261 0.79 -1.1 2,372,673 + MPMX20_02261 0.79 -0.9 2,372,673 + MPMX20_02261 0.79 +0.3 2,372,673 + MPMX20_02261 0.79 -1.2 2,372,673 + MPMX20_02261 0.79 -1.4 2,372,673 + MPMX20_02261 0.79 +3.3 2,372,681 - MPMX20_02261 0.81 -0.2 2,372,681 - MPMX20_02261 0.81 -0.7 2,372,681 - MPMX20_02261 0.81 +0.0 2,372,681 - MPMX20_02261 0.81 -1.0 2,372,712 - MPMX20_02261 0.85 +0.0 2,372,712 - MPMX20_02261 0.85 -1.4 2,372,749 + +0.3 2,372,749 + -0.7 2,372,749 + -0.4 2,372,786 - -0.5 2,372,790 - -3.5 2,372,791 + +0.4 2,372,827 - -0.7 2,372,916 + -1.4 2,372,926 + -0.7 2,372,934 - -0.4 2,372,939 - +0.1 2,372,965 - +1.3 2,373,134 + MPMX20_02262 0.22 +2.6 2,373,139 + MPMX20_02262 0.23 -0.0 2,373,139 + MPMX20_02262 0.23 -2.4 2,373,139 + MPMX20_02262 0.23 -1.7 2,373,139 + MPMX20_02262 0.23 -1.2 2,373,139 + MPMX20_02262 0.23 +1.3 2,373,139 + MPMX20_02262 0.23 -0.7 2,373,139 + MPMX20_02262 0.23 -0.4 2,373,147 - MPMX20_02262 0.23 +0.2 2,373,147 - MPMX20_02262 0.23 -2.2 2,373,147 - MPMX20_02262 0.23 +0.1 2,373,147 - MPMX20_02262 0.23 +1.0 2,373,147 - MPMX20_02262 0.23 +1.3 2,373,147 - MPMX20_02262 0.23 -0.4 2,373,147 - MPMX20_02262 0.23 +0.8 2,373,149 + MPMX20_02262 0.23 +0.4 2,373,149 + MPMX20_02262 0.23 -0.6 2,373,157 - MPMX20_02262 0.24 -0.1 2,373,160 + MPMX20_02262 0.24 -2.0 2,373,190 - MPMX20_02262 0.27 -0.1 2,373,198 + MPMX20_02262 0.28 +0.6 2,373,229 + MPMX20_02262 0.30 -2.3 2,373,237 - MPMX20_02262 0.31 +1.0 2,373,237 - MPMX20_02262 0.31 -2.3 2,373,239 + MPMX20_02262 0.31 -0.0 2,373,239 + MPMX20_02262 0.31 -1.4 2,373,247 - MPMX20_02262 0.32 -1.3 2,373,287 - MPMX20_02262 0.35 +0.8 2,373,365 + MPMX20_02262 0.42 -1.2 2,373,368 + MPMX20_02262 0.42 +1.0 2,373,375 + MPMX20_02262 0.42 -0.7 2,373,383 - MPMX20_02262 0.43 -0.3 2,373,383 - MPMX20_02262 0.43 +0.9 2,373,384 + MPMX20_02262 0.43 +2.3 2,373,384 + MPMX20_02262 0.43 +0.6 2,373,385 + MPMX20_02262 0.43 +0.3 2,373,393 - MPMX20_02262 0.44 -1.4 2,373,606 + MPMX20_02262 0.62 -1.3 2,373,606 + MPMX20_02262 0.62 -0.0 2,373,614 - MPMX20_02262 0.62 -0.2 2,373,614 - MPMX20_02262 0.62 -0.5 2,373,711 + MPMX20_02262 0.70 +0.2 2,373,839 + MPMX20_02262 0.81 +0.7 2,373,857 + MPMX20_02262 0.83 -2.4 2,373,873 + MPMX20_02262 0.84 -0.7 2,373,873 + MPMX20_02262 0.84 +1.0 2,373,895 - MPMX20_02262 0.86 -0.1 2,373,900 + MPMX20_02262 0.86 -1.2 2,373,905 + MPMX20_02262 0.87 -2.3 2,373,905 + MPMX20_02262 0.87 +0.1 2,373,908 - MPMX20_02262 0.87 +1.0 2,373,910 + MPMX20_02262 0.87 +4.1 2,373,913 - MPMX20_02262 0.87 +0.7 2,373,970 - -1.9 2,374,043 + +1.3 2,374,049 - -1.1 2,374,347 + MPMX20_02263 0.13 +3.6 2,374,347 - MPMX20_02263 0.13 +0.3 2,374,357 - MPMX20_02263 0.15 -0.0 2,374,362 - MPMX20_02263 0.15 -1.7 2,374,367 + MPMX20_02263 0.16 -0.4 2,374,424 - MPMX20_02263 0.23 +1.6 2,374,451 + MPMX20_02263 0.26 +0.9 2,374,479 + MPMX20_02263 0.30 -0.1 2,374,487 - MPMX20_02263 0.31 -2.0 2,374,502 + MPMX20_02263 0.33 +0.3 2,374,510 - MPMX20_02263 0.34 -0.9 2,374,555 - MPMX20_02263 0.40 +1.4 2,374,679 + MPMX20_02263 0.55 +0.9 2,374,712 + MPMX20_02263 0.60 +0.4 2,374,845 - MPMX20_02263 0.76 -1.5 2,374,850 + MPMX20_02263 0.77 +0.9 2,374,858 - MPMX20_02263 0.78 +1.1 2,374,919 - MPMX20_02263 0.86 -0.1 2,374,925 + MPMX20_02263 0.87 -1.6 2,374,944 + MPMX20_02263 0.89 -2.4 2,374,944 + MPMX20_02263 0.89 +0.9 2,374,950 - MPMX20_02263 0.90 +0.1 2,374,966 - +0.1 2,374,991 + -0.3 2,374,992 + +0.6 2,374,995 - +0.2 2,375,046 + +0.4 2,375,056 - +0.3
Or see this region's nucleotide sequence