Experiment: 1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02170 and MPMX20_02171 are separated by 87 nucleotides MPMX20_02171 and MPMX20_02172 are separated by 1 nucleotides MPMX20_02172 and MPMX20_02173 are separated by 262 nucleotides MPMX20_02173 and MPMX20_02174 overlap by 4 nucleotides
MPMX20_02170: MPMX20_02170 - hypothetical protein, at 2,262,670 to 2,263,254
_02170
MPMX20_02171: MPMX20_02171 - hypothetical protein, at 2,263,342 to 2,264,112
_02171
MPMX20_02172: MPMX20_02172 - hypothetical protein, at 2,264,114 to 2,264,311
_02172
MPMX20_02173: MPMX20_02173 - hypothetical protein, at 2,264,574 to 2,265,008
_02173
MPMX20_02174: MPMX20_02174 - hypothetical protein, at 2,265,005 to 2,265,724
_02174
Position (kb)
2264
2265 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2263.118 kb on + strand, within MPMX20_02170 at 2263.152 kb on + strand, within MPMX20_02170 at 2263.179 kb on + strand, within MPMX20_02170 at 2263.190 kb on + strand, within MPMX20_02170 at 2263.190 kb on + strand, within MPMX20_02170 at 2263.190 kb on + strand, within MPMX20_02170 at 2263.190 kb on + strand, within MPMX20_02170 at 2263.190 kb on + strand, within MPMX20_02170 at 2263.190 kb on + strand, within MPMX20_02170 at 2263.195 kb on + strand, within MPMX20_02170 at 2263.198 kb on - strand at 2263.198 kb on - strand at 2263.198 kb on - strand at 2263.198 kb on - strand at 2263.198 kb on - strand at 2263.198 kb on - strand at 2263.200 kb on + strand at 2263.200 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.201 kb on + strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.209 kb on - strand at 2263.211 kb on - strand at 2263.219 kb on - strand at 2263.223 kb on - strand at 2263.223 kb on - strand at 2263.255 kb on + strand at 2263.256 kb on - strand at 2263.257 kb on - strand at 2263.259 kb on + strand at 2263.259 kb on + strand at 2263.259 kb on + strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.267 kb on - strand at 2263.271 kb on - strand at 2263.287 kb on - strand at 2263.287 kb on - strand at 2263.291 kb on + strand at 2263.291 kb on + strand at 2263.299 kb on - strand at 2263.299 kb on - strand at 2263.299 kb on - strand at 2263.299 kb on - strand at 2263.299 kb on - strand at 2263.299 kb on - strand at 2263.299 kb on - strand at 2263.305 kb on + strand at 2263.305 kb on + strand at 2263.305 kb on + strand at 2263.305 kb on + strand at 2263.305 kb on + strand at 2263.305 kb on + strand at 2263.305 kb on + strand at 2263.308 kb on - strand at 2263.308 kb on - strand at 2263.310 kb on + strand at 2263.312 kb on + strand at 2263.312 kb on + strand at 2263.312 kb on + strand at 2263.313 kb on - strand at 2263.313 kb on - strand at 2263.313 kb on - strand at 2263.313 kb on - strand at 2263.320 kb on - strand at 2263.332 kb on - strand at 2263.347 kb on - strand at 2263.380 kb on + strand at 2263.388 kb on - strand at 2263.422 kb on + strand, within MPMX20_02171 at 2263.422 kb on + strand, within MPMX20_02171 at 2263.428 kb on + strand, within MPMX20_02171 at 2263.447 kb on - strand, within MPMX20_02171 at 2263.476 kb on + strand, within MPMX20_02171 at 2263.476 kb on + strand, within MPMX20_02171 at 2263.476 kb on + strand, within MPMX20_02171 at 2263.476 kb on + strand, within MPMX20_02171 at 2263.476 kb on + strand, within MPMX20_02171 at 2263.484 kb on - strand, within MPMX20_02171 at 2263.484 kb on - strand, within MPMX20_02171 at 2263.484 kb on - strand, within MPMX20_02171 at 2263.560 kb on + strand, within MPMX20_02171 at 2263.560 kb on + strand, within MPMX20_02171 at 2263.560 kb on + strand, within MPMX20_02171 at 2263.560 kb on + strand, within MPMX20_02171 at 2263.560 kb on + strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.568 kb on - strand, within MPMX20_02171 at 2263.618 kb on - strand, within MPMX20_02171 at 2263.666 kb on + strand, within MPMX20_02171 at 2263.673 kb on - strand, within MPMX20_02171 at 2263.674 kb on + strand, within MPMX20_02171 at 2263.679 kb on - strand, within MPMX20_02171 at 2263.695 kb on + strand, within MPMX20_02171 at 2263.695 kb on + strand, within MPMX20_02171 at 2263.695 kb on + strand, within MPMX20_02171 at 2263.703 kb on + strand, within MPMX20_02171 at 2263.714 kb on + strand, within MPMX20_02171 at 2263.729 kb on - strand, within MPMX20_02171 at 2263.745 kb on + strand, within MPMX20_02171 at 2263.755 kb on + strand, within MPMX20_02171 at 2263.755 kb on + strand, within MPMX20_02171 at 2263.755 kb on + strand, within MPMX20_02171 at 2263.763 kb on - strand, within MPMX20_02171 at 2263.763 kb on - strand, within MPMX20_02171 at 2263.774 kb on + strand, within MPMX20_02171 at 2263.802 kb on + strand, within MPMX20_02171 at 2263.807 kb on + strand, within MPMX20_02171 at 2263.807 kb on + strand, within MPMX20_02171 at 2263.875 kb on + strand, within MPMX20_02171 at 2263.882 kb on + strand, within MPMX20_02171 at 2263.882 kb on + strand, within MPMX20_02171 at 2263.882 kb on + strand, within MPMX20_02171 at 2263.882 kb on + strand, within MPMX20_02171 at 2263.882 kb on + strand, within MPMX20_02171 at 2263.890 kb on - strand, within MPMX20_02171 at 2263.890 kb on - strand, within MPMX20_02171 at 2263.890 kb on - strand, within MPMX20_02171 at 2263.890 kb on - strand, within MPMX20_02171 at 2263.890 kb on - strand, within MPMX20_02171 at 2263.890 kb on - strand, within MPMX20_02171 at 2263.897 kb on + strand, within MPMX20_02171 at 2263.897 kb on + strand, within MPMX20_02171 at 2263.930 kb on + strand, within MPMX20_02171 at 2263.930 kb on + strand, within MPMX20_02171 at 2263.937 kb on + strand, within MPMX20_02171 at 2263.938 kb on - strand, within MPMX20_02171 at 2263.938 kb on - strand, within MPMX20_02171 at 2263.942 kb on + strand, within MPMX20_02171 at 2263.942 kb on + strand, within MPMX20_02171 at 2263.942 kb on + strand, within MPMX20_02171 at 2263.942 kb on + strand, within MPMX20_02171 at 2263.950 kb on - strand, within MPMX20_02171 at 2263.982 kb on + strand, within MPMX20_02171 at 2263.984 kb on + strand, within MPMX20_02171 at 2263.992 kb on - strand, within MPMX20_02171 at 2264.052 kb on + strand at 2264.052 kb on + strand at 2264.060 kb on - strand at 2264.121 kb on - strand at 2264.131 kb on - strand at 2264.163 kb on + strand, within MPMX20_02172 at 2264.174 kb on + strand, within MPMX20_02172 at 2264.177 kb on - strand, within MPMX20_02172 at 2264.177 kb on - strand, within MPMX20_02172 at 2264.190 kb on + strand, within MPMX20_02172 at 2264.195 kb on + strand, within MPMX20_02172 at 2264.198 kb on - strand, within MPMX20_02172 at 2264.259 kb on + strand, within MPMX20_02172 at 2264.272 kb on + strand, within MPMX20_02172 at 2264.272 kb on + strand, within MPMX20_02172 at 2264.350 kb on - strand at 2264.380 kb on - strand at 2264.607 kb on + strand at 2264.607 kb on + strand at 2264.612 kb on + strand at 2264.612 kb on + strand at 2264.612 kb on + strand at 2264.612 kb on + strand at 2264.615 kb on - strand at 2264.620 kb on - strand, within MPMX20_02173 at 2264.620 kb on - strand, within MPMX20_02173 at 2264.630 kb on - strand, within MPMX20_02173 at 2264.641 kb on + strand, within MPMX20_02173 at 2264.651 kb on + strand, within MPMX20_02173 at 2264.827 kb on + strand, within MPMX20_02173 at 2264.827 kb on + strand, within MPMX20_02173 at 2264.835 kb on - strand, within MPMX20_02173 at 2264.840 kb on - strand, within MPMX20_02173 at 2264.875 kb on - strand, within MPMX20_02173 at 2264.882 kb on + strand, within MPMX20_02173 at 2264.955 kb on - strand, within MPMX20_02173 at 2264.966 kb on + strand at 2264.968 kb on + strand at 2264.976 kb on - strand at 2264.986 kb on - strand at 2264.995 kb on + strand at 2265.004 kb on + strand at 2265.014 kb on + strand at 2265.022 kb on - strand at 2265.040 kb on - strand at 2265.094 kb on - strand, within MPMX20_02174 at 2265.094 kb on - strand, within MPMX20_02174 at 2265.136 kb on - strand, within MPMX20_02174 at 2265.229 kb on - strand, within MPMX20_02174 at 2265.249 kb on + strand, within MPMX20_02174 at 2265.249 kb on + strand, within MPMX20_02174 at 2265.257 kb on - strand, within MPMX20_02174
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,263,118 + MPMX20_02170 0.77 +0.8 2,263,152 + MPMX20_02170 0.82 +0.8 2,263,179 + MPMX20_02170 0.87 -0.8 2,263,190 + MPMX20_02170 0.89 +0.5 2,263,190 + MPMX20_02170 0.89 -0.1 2,263,190 + MPMX20_02170 0.89 +0.4 2,263,190 + MPMX20_02170 0.89 +0.5 2,263,190 + MPMX20_02170 0.89 -0.5 2,263,190 + MPMX20_02170 0.89 -0.7 2,263,195 + MPMX20_02170 0.90 +0.3 2,263,198 - -0.5 2,263,198 - -0.3 2,263,198 - +2.3 2,263,198 - +0.3 2,263,198 - +0.1 2,263,198 - +0.7 2,263,200 + +0.9 2,263,200 + -1.6 2,263,201 + +0.7 2,263,201 + +1.9 2,263,201 + -0.2 2,263,201 + -0.1 2,263,201 + +0.0 2,263,201 + +1.1 2,263,201 + -0.8 2,263,201 + -0.3 2,263,201 + -1.2 2,263,201 + -1.4 2,263,201 + -0.7 2,263,201 + -0.7 2,263,201 + +0.4 2,263,201 + +0.4 2,263,201 + +1.4 2,263,201 + -0.5 2,263,201 + +0.3 2,263,201 + +0.1 2,263,201 + +0.4 2,263,201 + -0.1 2,263,201 + -0.9 2,263,201 + -0.7 2,263,208 - -0.9 2,263,208 - -0.2 2,263,208 - -1.5 2,263,208 - +0.7 2,263,208 - -0.7 2,263,208 - +0.3 2,263,208 - +1.3 2,263,208 - -1.0 2,263,208 - +1.3 2,263,208 - -0.8 2,263,208 - +3.2 2,263,208 - -0.1 2,263,208 - +0.2 2,263,208 - -0.1 2,263,208 - -1.2 2,263,208 - -1.5 2,263,209 - -0.3 2,263,209 - +0.3 2,263,209 - +1.0 2,263,209 - +2.3 2,263,209 - +0.3 2,263,209 - -2.8 2,263,209 - -2.0 2,263,209 - -0.7 2,263,209 - +1.7 2,263,209 - +0.2 2,263,209 - +1.1 2,263,209 - -0.4 2,263,211 - -0.6 2,263,219 - -0.3 2,263,223 - +0.5 2,263,223 - +0.1 2,263,255 + -1.7 2,263,256 - +0.3 2,263,257 - -0.3 2,263,259 + -3.0 2,263,259 + +1.3 2,263,259 + -1.0 2,263,267 - -0.1 2,263,267 - -1.4 2,263,267 - +0.4 2,263,267 - -0.3 2,263,267 - -1.6 2,263,267 - +0.7 2,263,267 - -1.5 2,263,267 - -0.5 2,263,267 - -1.3 2,263,267 - -1.9 2,263,267 - +0.3 2,263,267 - +1.7 2,263,267 - -4.1 2,263,267 - +1.2 2,263,271 - +1.9 2,263,287 - -2.1 2,263,287 - -1.0 2,263,291 + +1.0 2,263,291 + +0.1 2,263,299 - +0.7 2,263,299 - -0.9 2,263,299 - -0.5 2,263,299 - +1.9 2,263,299 - -0.0 2,263,299 - +0.5 2,263,299 - +0.7 2,263,305 + +1.4 2,263,305 + +0.3 2,263,305 + +0.3 2,263,305 + -0.7 2,263,305 + -0.5 2,263,305 + +0.3 2,263,305 + -1.4 2,263,308 - -0.8 2,263,308 - +2.4 2,263,310 + -1.2 2,263,312 + -0.1 2,263,312 + -2.1 2,263,312 + -0.3 2,263,313 - -1.1 2,263,313 - -0.5 2,263,313 - +0.3 2,263,313 - +0.0 2,263,320 - -0.4 2,263,332 - -0.0 2,263,347 - -0.5 2,263,380 + -0.3 2,263,388 - -0.2 2,263,422 + MPMX20_02171 0.10 +0.9 2,263,422 + MPMX20_02171 0.10 -2.8 2,263,428 + MPMX20_02171 0.11 +0.3 2,263,447 - MPMX20_02171 0.14 -0.2 2,263,476 + MPMX20_02171 0.17 +0.5 2,263,476 + MPMX20_02171 0.17 +1.3 2,263,476 + MPMX20_02171 0.17 +1.3 2,263,476 + MPMX20_02171 0.17 -2.2 2,263,476 + MPMX20_02171 0.17 -1.3 2,263,484 - MPMX20_02171 0.18 +0.8 2,263,484 - MPMX20_02171 0.18 +1.1 2,263,484 - MPMX20_02171 0.18 -0.3 2,263,560 + MPMX20_02171 0.28 +1.3 2,263,560 + MPMX20_02171 0.28 +1.9 2,263,560 + MPMX20_02171 0.28 +0.5 2,263,560 + MPMX20_02171 0.28 -0.3 2,263,560 + MPMX20_02171 0.28 +3.3 2,263,568 - MPMX20_02171 0.29 +0.7 2,263,568 - MPMX20_02171 0.29 +1.1 2,263,568 - MPMX20_02171 0.29 -2.2 2,263,568 - MPMX20_02171 0.29 +1.0 2,263,568 - MPMX20_02171 0.29 +0.6 2,263,568 - MPMX20_02171 0.29 +0.0 2,263,568 - MPMX20_02171 0.29 +0.7 2,263,568 - MPMX20_02171 0.29 +0.0 2,263,568 - MPMX20_02171 0.29 +0.3 2,263,568 - MPMX20_02171 0.29 -1.8 2,263,568 - MPMX20_02171 0.29 +0.2 2,263,568 - MPMX20_02171 0.29 +1.3 2,263,618 - MPMX20_02171 0.36 -1.3 2,263,666 + MPMX20_02171 0.42 +0.1 2,263,673 - MPMX20_02171 0.43 +2.0 2,263,674 + MPMX20_02171 0.43 +0.1 2,263,679 - MPMX20_02171 0.44 -0.6 2,263,695 + MPMX20_02171 0.46 +0.9 2,263,695 + MPMX20_02171 0.46 -1.2 2,263,695 + MPMX20_02171 0.46 -0.3 2,263,703 + MPMX20_02171 0.47 -0.7 2,263,714 + MPMX20_02171 0.48 -0.3 2,263,729 - MPMX20_02171 0.50 -0.3 2,263,745 + MPMX20_02171 0.52 -1.6 2,263,755 + MPMX20_02171 0.54 +0.8 2,263,755 + MPMX20_02171 0.54 +0.3 2,263,755 + MPMX20_02171 0.54 +1.0 2,263,763 - MPMX20_02171 0.55 +0.9 2,263,763 - MPMX20_02171 0.55 -2.6 2,263,774 + MPMX20_02171 0.56 -0.9 2,263,802 + MPMX20_02171 0.60 +0.3 2,263,807 + MPMX20_02171 0.60 +1.5 2,263,807 + MPMX20_02171 0.60 +2.0 2,263,875 + MPMX20_02171 0.69 +1.3 2,263,882 + MPMX20_02171 0.70 -0.0 2,263,882 + MPMX20_02171 0.70 -2.5 2,263,882 + MPMX20_02171 0.70 +1.2 2,263,882 + MPMX20_02171 0.70 -1.5 2,263,882 + MPMX20_02171 0.70 +0.8 2,263,890 - MPMX20_02171 0.71 +2.4 2,263,890 - MPMX20_02171 0.71 +0.3 2,263,890 - MPMX20_02171 0.71 -3.0 2,263,890 - MPMX20_02171 0.71 -2.3 2,263,890 - MPMX20_02171 0.71 -1.0 2,263,890 - MPMX20_02171 0.71 +0.4 2,263,897 + MPMX20_02171 0.72 -1.0 2,263,897 + MPMX20_02171 0.72 +0.3 2,263,930 + MPMX20_02171 0.76 -2.4 2,263,930 + MPMX20_02171 0.76 +1.0 2,263,937 + MPMX20_02171 0.77 +0.9 2,263,938 - MPMX20_02171 0.77 -1.8 2,263,938 - MPMX20_02171 0.77 -0.1 2,263,942 + MPMX20_02171 0.78 -1.6 2,263,942 + MPMX20_02171 0.78 +1.4 2,263,942 + MPMX20_02171 0.78 +0.5 2,263,942 + MPMX20_02171 0.78 -0.6 2,263,950 - MPMX20_02171 0.79 +1.4 2,263,982 + MPMX20_02171 0.83 +1.0 2,263,984 + MPMX20_02171 0.83 -0.8 2,263,992 - MPMX20_02171 0.84 +0.6 2,264,052 + -0.8 2,264,052 + +0.3 2,264,060 - +0.5 2,264,121 - +0.3 2,264,131 - +0.5 2,264,163 + MPMX20_02172 0.25 -0.7 2,264,174 + MPMX20_02172 0.30 -0.2 2,264,177 - MPMX20_02172 0.32 -3.7 2,264,177 - MPMX20_02172 0.32 -0.2 2,264,190 + MPMX20_02172 0.38 -0.7 2,264,195 + MPMX20_02172 0.41 -0.5 2,264,198 - MPMX20_02172 0.42 -1.9 2,264,259 + MPMX20_02172 0.73 -1.1 2,264,272 + MPMX20_02172 0.80 -1.6 2,264,272 + MPMX20_02172 0.80 -0.5 2,264,350 - -1.6 2,264,380 - +0.3 2,264,607 + -0.0 2,264,607 + -1.9 2,264,612 + -0.2 2,264,612 + +0.1 2,264,612 + +0.6 2,264,612 + -0.0 2,264,615 - +0.5 2,264,620 - MPMX20_02173 0.11 +0.5 2,264,620 - MPMX20_02173 0.11 +0.4 2,264,630 - MPMX20_02173 0.13 -0.7 2,264,641 + MPMX20_02173 0.15 +1.8 2,264,651 + MPMX20_02173 0.18 -2.7 2,264,827 + MPMX20_02173 0.58 -0.4 2,264,827 + MPMX20_02173 0.58 -0.3 2,264,835 - MPMX20_02173 0.60 -1.3 2,264,840 - MPMX20_02173 0.61 -2.0 2,264,875 - MPMX20_02173 0.69 -0.6 2,264,882 + MPMX20_02173 0.71 -0.7 2,264,955 - MPMX20_02173 0.88 +0.1 2,264,966 + -1.3 2,264,968 + +0.8 2,264,976 - -0.7 2,264,986 - -1.2 2,264,995 + +0.6 2,265,004 + -0.0 2,265,014 + +0.7 2,265,022 - -1.0 2,265,040 - -2.2 2,265,094 - MPMX20_02174 0.12 -0.5 2,265,094 - MPMX20_02174 0.12 +0.1 2,265,136 - MPMX20_02174 0.18 -1.0 2,265,229 - MPMX20_02174 0.31 +2.4 2,265,249 + MPMX20_02174 0.34 -1.1 2,265,249 + MPMX20_02174 0.34 +0.7 2,265,257 - MPMX20_02174 0.35 -0.3
Or see this region's nucleotide sequence