Experiment: R2A with 3-octanone 1.77016666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS15390 and ABIE51_RS15395 are separated by 8 nucleotides ABIE51_RS15395 and ABIE51_RS15400 are separated by 64 nucleotides ABIE51_RS15400 and ABIE51_RS15405 overlap by 4 nucleotides ABIE51_RS15405 and ABIE51_RS15410 are separated by 20 nucleotides
ABIE51_RS15390: ABIE51_RS15390 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,341,792 to 3,342,931
_RS15390
ABIE51_RS15395: ABIE51_RS15395 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 3,342,940 to 3,343,440
_RS15395
ABIE51_RS15400: ABIE51_RS15400 - Trm112 family protein, at 3,343,505 to 3,343,774
_RS15400
ABIE51_RS15405: ABIE51_RS15405 - carboxylating nicotinate-nucleotide diphosphorylase, at 3,343,771 to 3,344,637
_RS15405
ABIE51_RS15410: ABIE51_RS15410 - FHA domain-containing protein, at 3,344,658 to 3,345,458
_RS15410
Position (kb)
3343
3344 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3343.446 kb on + strand at 3343.446 kb on + strand at 3343.446 kb on + strand at 3343.447 kb on - strand at 3343.447 kb on - strand at 3343.447 kb on - strand at 3343.447 kb on - strand at 3343.466 kb on + strand at 3343.466 kb on + strand at 3343.466 kb on + strand at 3343.466 kb on + strand at 3343.466 kb on + strand at 3343.466 kb on + strand at 3343.466 kb on + strand at 3343.467 kb on - strand at 3343.467 kb on - strand at 3343.467 kb on - strand at 3343.467 kb on - strand at 3343.471 kb on + strand at 3343.472 kb on - strand at 3343.691 kb on + strand, within ABIE51_RS15400 at 3343.691 kb on + strand, within ABIE51_RS15400 at 3343.691 kb on + strand, within ABIE51_RS15400 at 3343.805 kb on + strand at 3343.806 kb on - strand at 3343.806 kb on - strand at 3343.895 kb on - strand, within ABIE51_RS15405 at 3343.895 kb on - strand, within ABIE51_RS15405 at 3344.061 kb on - strand, within ABIE51_RS15405 at 3344.061 kb on - strand, within ABIE51_RS15405 at 3344.128 kb on + strand, within ABIE51_RS15405 at 3344.142 kb on - strand, within ABIE51_RS15405 at 3344.142 kb on - strand, within ABIE51_RS15405 at 3344.209 kb on + strand, within ABIE51_RS15405 at 3344.209 kb on + strand, within ABIE51_RS15405 at 3344.209 kb on + strand, within ABIE51_RS15405 at 3344.210 kb on - strand, within ABIE51_RS15405 at 3344.210 kb on - strand, within ABIE51_RS15405 at 3344.659 kb on + strand at 3344.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 1.77016666666667 mM remove 3,343,446 + -0.5 3,343,446 + +1.3 3,343,446 + -0.6 3,343,447 - +0.4 3,343,447 - +0.5 3,343,447 - +0.6 3,343,447 - +0.5 3,343,466 + -1.4 3,343,466 + +0.2 3,343,466 + -1.5 3,343,466 + +0.3 3,343,466 + -0.2 3,343,466 + +0.1 3,343,466 + +0.2 3,343,467 - -0.6 3,343,467 - -0.1 3,343,467 - +0.3 3,343,467 - +0.3 3,343,471 + +0.1 3,343,472 - -1.9 3,343,691 + ABIE51_RS15400 0.69 -3.9 3,343,691 + ABIE51_RS15400 0.69 -0.3 3,343,691 + ABIE51_RS15400 0.69 -1.8 3,343,805 + +0.3 3,343,806 - +0.8 3,343,806 - +0.4 3,343,895 - ABIE51_RS15405 0.14 -0.0 3,343,895 - ABIE51_RS15405 0.14 +0.8 3,344,061 - ABIE51_RS15405 0.33 -0.3 3,344,061 - ABIE51_RS15405 0.33 +0.4 3,344,128 + ABIE51_RS15405 0.41 -0.6 3,344,142 - ABIE51_RS15405 0.43 +0.1 3,344,142 - ABIE51_RS15405 0.43 -0.1 3,344,209 + ABIE51_RS15405 0.51 -0.1 3,344,209 + ABIE51_RS15405 0.51 +0.6 3,344,209 + ABIE51_RS15405 0.51 -0.4 3,344,210 - ABIE51_RS15405 0.51 -0.0 3,344,210 - ABIE51_RS15405 0.51 -1.3 3,344,659 + -0.4 3,344,659 + -1.0
Or see this region's nucleotide sequence