Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS11930

Experiment: R2A with 3-octanone 1.77016666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS11925 and ABIE51_RS11930 overlap by 4 nucleotidesABIE51_RS11930 and ABIE51_RS11935 are separated by 13 nucleotides ABIE51_RS11925: ABIE51_RS11925 - poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 2,578,736 to 2,579,992 _RS11925 ABIE51_RS11930: ABIE51_RS11930 - hypothetical protein, at 2,579,989 to 2,580,513 _RS11930 ABIE51_RS11935: ABIE51_RS11935 - alpha/beta fold hydrolase, at 2,580,527 to 2,581,579 _RS11935 Position (kb) 2579 2580 2581Strain fitness (log2 ratio) -1 0 1at 2579.055 kb on - strand, within ABIE51_RS11925at 2579.669 kb on + strand, within ABIE51_RS11925at 2579.670 kb on - strand, within ABIE51_RS11925at 2579.670 kb on - strand, within ABIE51_RS11925at 2579.670 kb on - strand, within ABIE51_RS11925at 2579.789 kb on + strand, within ABIE51_RS11925at 2579.816 kb on - strand, within ABIE51_RS11925at 2579.831 kb on + strand, within ABIE51_RS11925at 2580.118 kb on + strand, within ABIE51_RS11930at 2580.121 kb on + strand, within ABIE51_RS11930at 2580.121 kb on + strand, within ABIE51_RS11930at 2580.122 kb on - strand, within ABIE51_RS11930at 2580.122 kb on - strand, within ABIE51_RS11930at 2580.122 kb on - strand, within ABIE51_RS11930at 2580.122 kb on - strand, within ABIE51_RS11930at 2580.122 kb on - strand, within ABIE51_RS11930at 2580.122 kb on - strand, within ABIE51_RS11930at 2580.427 kb on + strand, within ABIE51_RS11930at 2580.428 kb on - strand, within ABIE51_RS11930at 2580.428 kb on - strand, within ABIE51_RS11930at 2580.850 kb on + strand, within ABIE51_RS11935at 2580.850 kb on + strand, within ABIE51_RS11935at 2580.956 kb on + strand, within ABIE51_RS11935at 2580.956 kb on + strand, within ABIE51_RS11935at 2580.957 kb on - strand, within ABIE51_RS11935at 2580.957 kb on - strand, within ABIE51_RS11935at 2580.957 kb on - strand, within ABIE51_RS11935at 2580.957 kb on - strand, within ABIE51_RS11935at 2580.957 kb on - strand, within ABIE51_RS11935at 2580.958 kb on + strand, within ABIE51_RS11935at 2580.958 kb on + strand, within ABIE51_RS11935at 2580.958 kb on + strand, within ABIE51_RS11935at 2580.958 kb on + strand, within ABIE51_RS11935at 2580.959 kb on - strand, within ABIE51_RS11935at 2580.959 kb on - strand, within ABIE51_RS11935at 2581.140 kb on + strand, within ABIE51_RS11935at 2581.174 kb on - strand, within ABIE51_RS11935at 2581.198 kb on - strand, within ABIE51_RS11935at 2581.240 kb on - strand, within ABIE51_RS11935

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 1.77016666666667 mM
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2,579,055 - ABIE51_RS11925 0.25 -0.2
2,579,669 + ABIE51_RS11925 0.74 +0.6
2,579,670 - ABIE51_RS11925 0.74 +0.0
2,579,670 - ABIE51_RS11925 0.74 -1.1
2,579,670 - ABIE51_RS11925 0.74 +0.5
2,579,789 + ABIE51_RS11925 0.84 +0.8
2,579,816 - ABIE51_RS11925 0.86 -0.9
2,579,831 + ABIE51_RS11925 0.87 -0.3
2,580,118 + ABIE51_RS11930 0.25 -0.9
2,580,121 + ABIE51_RS11930 0.25 +0.3
2,580,121 + ABIE51_RS11930 0.25 +0.2
2,580,122 - ABIE51_RS11930 0.25 +1.2
2,580,122 - ABIE51_RS11930 0.25 +1.0
2,580,122 - ABIE51_RS11930 0.25 -0.3
2,580,122 - ABIE51_RS11930 0.25 +0.3
2,580,122 - ABIE51_RS11930 0.25 +0.4
2,580,122 - ABIE51_RS11930 0.25 -0.3
2,580,427 + ABIE51_RS11930 0.83 -0.0
2,580,428 - ABIE51_RS11930 0.84 +0.6
2,580,428 - ABIE51_RS11930 0.84 -0.0
2,580,850 + ABIE51_RS11935 0.31 -0.1
2,580,850 + ABIE51_RS11935 0.31 -0.9
2,580,956 + ABIE51_RS11935 0.41 -0.4
2,580,956 + ABIE51_RS11935 0.41 -0.3
2,580,957 - ABIE51_RS11935 0.41 -0.9
2,580,957 - ABIE51_RS11935 0.41 -0.5
2,580,957 - ABIE51_RS11935 0.41 -0.1
2,580,957 - ABIE51_RS11935 0.41 -0.2
2,580,957 - ABIE51_RS11935 0.41 -0.9
2,580,958 + ABIE51_RS11935 0.41 -0.2
2,580,958 + ABIE51_RS11935 0.41 -0.8
2,580,958 + ABIE51_RS11935 0.41 -0.5
2,580,958 + ABIE51_RS11935 0.41 +0.1
2,580,959 - ABIE51_RS11935 0.41 -0.2
2,580,959 - ABIE51_RS11935 0.41 -0.7
2,581,140 + ABIE51_RS11935 0.58 -0.2
2,581,174 - ABIE51_RS11935 0.61 -0.3
2,581,198 - ABIE51_RS11935 0.64 +0.8
2,581,240 - ABIE51_RS11935 0.68 -0.6

Or see this region's nucleotide sequence