Experiment: R2A with 3-octanone 1.77016666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS11925 and ABIE51_RS11930 overlap by 4 nucleotides ABIE51_RS11930 and ABIE51_RS11935 are separated by 13 nucleotides
ABIE51_RS11925: ABIE51_RS11925 - poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 2,578,736 to 2,579,992
_RS11925
ABIE51_RS11930: ABIE51_RS11930 - hypothetical protein, at 2,579,989 to 2,580,513
_RS11930
ABIE51_RS11935: ABIE51_RS11935 - alpha/beta fold hydrolase, at 2,580,527 to 2,581,579
_RS11935
Position (kb)
2579
2580
2581 Strain fitness (log2 ratio)
-1
0
1 at 2579.055 kb on - strand, within ABIE51_RS11925 at 2579.669 kb on + strand, within ABIE51_RS11925 at 2579.670 kb on - strand, within ABIE51_RS11925 at 2579.670 kb on - strand, within ABIE51_RS11925 at 2579.670 kb on - strand, within ABIE51_RS11925 at 2579.789 kb on + strand, within ABIE51_RS11925 at 2579.816 kb on - strand, within ABIE51_RS11925 at 2579.831 kb on + strand, within ABIE51_RS11925 at 2580.118 kb on + strand, within ABIE51_RS11930 at 2580.121 kb on + strand, within ABIE51_RS11930 at 2580.121 kb on + strand, within ABIE51_RS11930 at 2580.122 kb on - strand, within ABIE51_RS11930 at 2580.122 kb on - strand, within ABIE51_RS11930 at 2580.122 kb on - strand, within ABIE51_RS11930 at 2580.122 kb on - strand, within ABIE51_RS11930 at 2580.122 kb on - strand, within ABIE51_RS11930 at 2580.122 kb on - strand, within ABIE51_RS11930 at 2580.427 kb on + strand, within ABIE51_RS11930 at 2580.428 kb on - strand, within ABIE51_RS11930 at 2580.428 kb on - strand, within ABIE51_RS11930 at 2580.850 kb on + strand, within ABIE51_RS11935 at 2580.850 kb on + strand, within ABIE51_RS11935 at 2580.956 kb on + strand, within ABIE51_RS11935 at 2580.956 kb on + strand, within ABIE51_RS11935 at 2580.957 kb on - strand, within ABIE51_RS11935 at 2580.957 kb on - strand, within ABIE51_RS11935 at 2580.957 kb on - strand, within ABIE51_RS11935 at 2580.957 kb on - strand, within ABIE51_RS11935 at 2580.957 kb on - strand, within ABIE51_RS11935 at 2580.958 kb on + strand, within ABIE51_RS11935 at 2580.958 kb on + strand, within ABIE51_RS11935 at 2580.958 kb on + strand, within ABIE51_RS11935 at 2580.958 kb on + strand, within ABIE51_RS11935 at 2580.959 kb on - strand, within ABIE51_RS11935 at 2580.959 kb on - strand, within ABIE51_RS11935 at 2581.140 kb on + strand, within ABIE51_RS11935 at 2581.174 kb on - strand, within ABIE51_RS11935 at 2581.198 kb on - strand, within ABIE51_RS11935 at 2581.240 kb on - strand, within ABIE51_RS11935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 1.77016666666667 mM remove 2,579,055 - ABIE51_RS11925 0.25 -0.2 2,579,669 + ABIE51_RS11925 0.74 +0.6 2,579,670 - ABIE51_RS11925 0.74 +0.0 2,579,670 - ABIE51_RS11925 0.74 -1.1 2,579,670 - ABIE51_RS11925 0.74 +0.5 2,579,789 + ABIE51_RS11925 0.84 +0.8 2,579,816 - ABIE51_RS11925 0.86 -0.9 2,579,831 + ABIE51_RS11925 0.87 -0.3 2,580,118 + ABIE51_RS11930 0.25 -0.9 2,580,121 + ABIE51_RS11930 0.25 +0.3 2,580,121 + ABIE51_RS11930 0.25 +0.2 2,580,122 - ABIE51_RS11930 0.25 +1.2 2,580,122 - ABIE51_RS11930 0.25 +1.0 2,580,122 - ABIE51_RS11930 0.25 -0.3 2,580,122 - ABIE51_RS11930 0.25 +0.3 2,580,122 - ABIE51_RS11930 0.25 +0.4 2,580,122 - ABIE51_RS11930 0.25 -0.3 2,580,427 + ABIE51_RS11930 0.83 -0.0 2,580,428 - ABIE51_RS11930 0.84 +0.6 2,580,428 - ABIE51_RS11930 0.84 -0.0 2,580,850 + ABIE51_RS11935 0.31 -0.1 2,580,850 + ABIE51_RS11935 0.31 -0.9 2,580,956 + ABIE51_RS11935 0.41 -0.4 2,580,956 + ABIE51_RS11935 0.41 -0.3 2,580,957 - ABIE51_RS11935 0.41 -0.9 2,580,957 - ABIE51_RS11935 0.41 -0.5 2,580,957 - ABIE51_RS11935 0.41 -0.1 2,580,957 - ABIE51_RS11935 0.41 -0.2 2,580,957 - ABIE51_RS11935 0.41 -0.9 2,580,958 + ABIE51_RS11935 0.41 -0.2 2,580,958 + ABIE51_RS11935 0.41 -0.8 2,580,958 + ABIE51_RS11935 0.41 -0.5 2,580,958 + ABIE51_RS11935 0.41 +0.1 2,580,959 - ABIE51_RS11935 0.41 -0.2 2,580,959 - ABIE51_RS11935 0.41 -0.7 2,581,140 + ABIE51_RS11935 0.58 -0.2 2,581,174 - ABIE51_RS11935 0.61 -0.3 2,581,198 - ABIE51_RS11935 0.64 +0.8 2,581,240 - ABIE51_RS11935 0.68 -0.6
Or see this region's nucleotide sequence