Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS11305

Experiment: R2A with 3-octanone 1.77016666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS11295 and ABIE51_RS11300 overlap by 7 nucleotidesABIE51_RS11300 and ABIE51_RS11305 overlap by 74 nucleotidesABIE51_RS11305 and ABIE51_RS11310 are separated by 88 nucleotidesABIE51_RS11310 and ABIE51_RS11315 are separated by 294 nucleotides ABIE51_RS11295: ABIE51_RS11295 - SDR family oxidoreductase, at 2,447,426 to 2,448,187 _RS11295 ABIE51_RS11300: ABIE51_RS11300 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 2,448,181 to 2,448,516 _RS11300 ABIE51_RS11305: ABIE51_RS11305 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 2,448,443 to 2,448,661 _RS11305 ABIE51_RS11310: ABIE51_RS11310 - hypothetical protein, at 2,448,750 to 2,449,361 _RS11310 ABIE51_RS11315: ABIE51_RS11315 - NADPH-dependent FMN reductase, at 2,449,656 to 2,450,225 _RS11315 Position (kb) 2448 2449Strain fitness (log2 ratio) -1 0 1at 2447.566 kb on + strand, within ABIE51_RS11295at 2447.808 kb on - strand, within ABIE51_RS11295at 2447.913 kb on - strand, within ABIE51_RS11295at 2448.183 kb on - strandat 2448.200 kb on + strandat 2448.200 kb on + strandat 2448.201 kb on - strandat 2448.201 kb on - strandat 2448.306 kb on - strand, within ABIE51_RS11300at 2448.317 kb on - strand, within ABIE51_RS11300at 2448.321 kb on - strand, within ABIE51_RS11300at 2448.459 kb on + strandat 2448.459 kb on + strandat 2448.459 kb on + strandat 2448.459 kb on + strandat 2448.459 kb on + strandat 2448.830 kb on - strand, within ABIE51_RS11310at 2448.911 kb on - strand, within ABIE51_RS11310at 2448.934 kb on + strand, within ABIE51_RS11310at 2448.934 kb on + strand, within ABIE51_RS11310at 2448.935 kb on - strand, within ABIE51_RS11310at 2449.163 kb on - strand, within ABIE51_RS11310at 2449.240 kb on + strand, within ABIE51_RS11310at 2449.241 kb on - strand, within ABIE51_RS11310at 2449.374 kb on + strandat 2449.374 kb on + strandat 2449.375 kb on - strandat 2449.375 kb on - strandat 2449.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 1.77016666666667 mM
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2,447,566 + ABIE51_RS11295 0.18 +0.8
2,447,808 - ABIE51_RS11295 0.50 -0.3
2,447,913 - ABIE51_RS11295 0.64 +0.3
2,448,183 - -0.2
2,448,200 + +0.0
2,448,200 + -0.0
2,448,201 - +0.8
2,448,201 - -1.1
2,448,306 - ABIE51_RS11300 0.37 +1.0
2,448,317 - ABIE51_RS11300 0.40 +0.2
2,448,321 - ABIE51_RS11300 0.42 +0.9
2,448,459 + -0.0
2,448,459 + +0.0
2,448,459 + +0.4
2,448,459 + +0.4
2,448,459 + -0.1
2,448,830 - ABIE51_RS11310 0.13 -1.3
2,448,911 - ABIE51_RS11310 0.26 +1.2
2,448,934 + ABIE51_RS11310 0.30 +0.1
2,448,934 + ABIE51_RS11310 0.30 +0.7
2,448,935 - ABIE51_RS11310 0.30 -0.1
2,449,163 - ABIE51_RS11310 0.67 +0.1
2,449,240 + ABIE51_RS11310 0.80 -0.1
2,449,241 - ABIE51_RS11310 0.80 -0.1
2,449,374 + -0.3
2,449,374 + +0.6
2,449,375 - +0.6
2,449,375 - +0.3
2,449,375 - -0.0

Or see this region's nucleotide sequence