Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS11180

Experiment: R2A with 3-octanone 1.77016666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS11175 and ABIE51_RS11180 are separated by 2 nucleotidesABIE51_RS11180 and ABIE51_RS11185 are separated by 139 nucleotidesABIE51_RS11185 and ABIE51_RS11190 are separated by 1 nucleotides ABIE51_RS11175: ABIE51_RS11175 - porin, at 2,426,859 to 2,427,941 _RS11175 ABIE51_RS11180: ABIE51_RS11180 - DUF4124 domain-containing protein, at 2,427,944 to 2,428,318 _RS11180 ABIE51_RS11185: ABIE51_RS11185 - hypothetical protein, at 2,428,458 to 2,428,778 _RS11185 ABIE51_RS11190: ABIE51_RS11190 - phage baseplate assembly protein V, at 2,428,780 to 2,429,307 _RS11190 Position (kb) 2427 2428 2429Strain fitness (log2 ratio) -2 -1 0 1at 2426.964 kb on + strandat 2426.964 kb on + strandat 2426.965 kb on - strandat 2426.965 kb on - strandat 2426.967 kb on + strandat 2427.753 kb on + strand, within ABIE51_RS11175at 2427.754 kb on - strand, within ABIE51_RS11175at 2427.754 kb on - strand, within ABIE51_RS11175at 2427.829 kb on - strand, within ABIE51_RS11175at 2427.829 kb on - strand, within ABIE51_RS11175at 2427.861 kb on + strandat 2427.861 kb on + strandat 2427.862 kb on - strandat 2427.862 kb on - strandat 2427.862 kb on - strandat 2427.862 kb on - strandat 2428.230 kb on + strand, within ABIE51_RS11180at 2428.230 kb on + strand, within ABIE51_RS11180at 2428.264 kb on - strand, within ABIE51_RS11180at 2428.288 kb on + strandat 2428.289 kb on - strandat 2428.365 kb on + strandat 2428.702 kb on + strand, within ABIE51_RS11185at 2428.900 kb on - strand, within ABIE51_RS11190at 2429.092 kb on + strand, within ABIE51_RS11190at 2429.092 kb on + strand, within ABIE51_RS11190at 2429.093 kb on - strand, within ABIE51_RS11190at 2429.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 1.77016666666667 mM
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2,426,964 + +0.7
2,426,964 + -0.6
2,426,965 - +0.6
2,426,965 - -0.2
2,426,967 + -1.8
2,427,753 + ABIE51_RS11175 0.83 +1.0
2,427,754 - ABIE51_RS11175 0.83 +0.1
2,427,754 - ABIE51_RS11175 0.83 +0.5
2,427,829 - ABIE51_RS11175 0.90 +1.2
2,427,829 - ABIE51_RS11175 0.90 +0.4
2,427,861 + +1.6
2,427,861 + +0.0
2,427,862 - -0.1
2,427,862 - +0.6
2,427,862 - -0.4
2,427,862 - +0.1
2,428,230 + ABIE51_RS11180 0.76 -0.1
2,428,230 + ABIE51_RS11180 0.76 +0.0
2,428,264 - ABIE51_RS11180 0.85 +0.2
2,428,288 + +0.8
2,428,289 - -0.1
2,428,365 + -0.1
2,428,702 + ABIE51_RS11185 0.76 -1.2
2,428,900 - ABIE51_RS11190 0.23 +0.2
2,429,092 + ABIE51_RS11190 0.59 -0.8
2,429,092 + ABIE51_RS11190 0.59 -0.4
2,429,093 - ABIE51_RS11190 0.59 +0.2
2,429,271 - -0.5

Or see this region's nucleotide sequence