Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16450

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS16445 and ABIE51_RS16450 are separated by 81 nucleotidesABIE51_RS16450 and ABIE51_RS16455 are separated by 77 nucleotides ABIE51_RS16445: ABIE51_RS16445 - PepSY-associated TM helix domain-containing protein, at 3,576,575 to 3,577,603 _RS16445 ABIE51_RS16450: ABIE51_RS16450 - tRNA dihydrouridine synthase DusB, at 3,577,685 to 3,578,695 _RS16450 ABIE51_RS16455: ABIE51_RS16455 - class I SAM-dependent methyltransferase, at 3,578,773 to 3,579,609 _RS16455 Position (kb) 3577 3578 3579Strain fitness (log2 ratio) -1 0 1at 3576.815 kb on + strand, within ABIE51_RS16445at 3576.839 kb on + strand, within ABIE51_RS16445at 3577.004 kb on + strand, within ABIE51_RS16445at 3577.044 kb on + strand, within ABIE51_RS16445at 3577.044 kb on + strand, within ABIE51_RS16445at 3577.045 kb on - strand, within ABIE51_RS16445at 3577.045 kb on - strand, within ABIE51_RS16445at 3577.045 kb on - strand, within ABIE51_RS16445at 3577.045 kb on - strand, within ABIE51_RS16445at 3577.157 kb on + strand, within ABIE51_RS16445at 3577.476 kb on - strand, within ABIE51_RS16445at 3577.674 kb on - strandat 3577.952 kb on + strand, within ABIE51_RS16450at 3578.228 kb on + strand, within ABIE51_RS16450at 3578.229 kb on - strand, within ABIE51_RS16450at 3578.229 kb on - strand, within ABIE51_RS16450at 3578.246 kb on + strand, within ABIE51_RS16450at 3578.417 kb on + strand, within ABIE51_RS16450at 3578.555 kb on + strand, within ABIE51_RS16450at 3578.556 kb on - strand, within ABIE51_RS16450at 3578.645 kb on + strandat 3578.646 kb on - strandat 3578.694 kb on - strandat 3578.896 kb on + strand, within ABIE51_RS16455at 3579.277 kb on + strand, within ABIE51_RS16455at 3579.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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3,576,815 + ABIE51_RS16445 0.23 +0.6
3,576,839 + ABIE51_RS16445 0.26 -0.3
3,577,004 + ABIE51_RS16445 0.42 +0.4
3,577,044 + ABIE51_RS16445 0.46 -0.4
3,577,044 + ABIE51_RS16445 0.46 -0.0
3,577,045 - ABIE51_RS16445 0.46 -0.2
3,577,045 - ABIE51_RS16445 0.46 +0.4
3,577,045 - ABIE51_RS16445 0.46 +0.9
3,577,045 - ABIE51_RS16445 0.46 -0.1
3,577,157 + ABIE51_RS16445 0.57 +0.0
3,577,476 - ABIE51_RS16445 0.88 +0.8
3,577,674 - -0.5
3,577,952 + ABIE51_RS16450 0.26 -0.1
3,578,228 + ABIE51_RS16450 0.54 -1.0
3,578,229 - ABIE51_RS16450 0.54 -1.0
3,578,229 - ABIE51_RS16450 0.54 -0.3
3,578,246 + ABIE51_RS16450 0.55 +0.1
3,578,417 + ABIE51_RS16450 0.72 -0.1
3,578,555 + ABIE51_RS16450 0.86 +0.1
3,578,556 - ABIE51_RS16450 0.86 -0.4
3,578,645 + +0.2
3,578,646 - +0.6
3,578,694 - -0.0
3,578,896 + ABIE51_RS16455 0.15 +0.2
3,579,277 + ABIE51_RS16455 0.60 +0.2
3,579,575 - +0.1

Or see this region's nucleotide sequence