Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02550 and ABIE51_RS02555 are separated by 17 nucleotides ABIE51_RS02555 and ABIE51_RS02560 are separated by 331 nucleotides
ABIE51_RS02550: ABIE51_RS02550 - MASE1 domain-containing protein, at 563,082 to 564,665
_RS02550
ABIE51_RS02555: ABIE51_RS02555 - tryptophan-rich sensory protein, at 564,683 to 565,441
_RS02555
ABIE51_RS02560: ABIE51_RS02560 - PAS domain-containing protein, at 565,773 to 567,320
_RS02560
Position (kb) 564
565
566 Strain fitness (log2 ratio) -1
0
1
2 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.941 kb on - strand, within ABIE51_RS02550 at 564.246 kb on + strand, within ABIE51_RS02550 at 564.247 kb on - strand, within ABIE51_RS02550 at 564.247 kb on - strand, within ABIE51_RS02550 at 564.822 kb on + strand, within ABIE51_RS02555 at 564.822 kb on + strand, within ABIE51_RS02555 at 564.822 kb on + strand, within ABIE51_RS02555 at 564.822 kb on + strand, within ABIE51_RS02555 at 564.823 kb on - strand, within ABIE51_RS02555 at 564.823 kb on - strand, within ABIE51_RS02555 at 565.101 kb on + strand, within ABIE51_RS02555 at 565.101 kb on + strand, within ABIE51_RS02555 at 565.102 kb on - strand, within ABIE51_RS02555 at 565.338 kb on + strand, within ABIE51_RS02555 at 565.435 kb on - strand at 565.525 kb on + strand at 565.526 kb on + strand at 565.526 kb on - strand at 565.526 kb on - strand at 565.526 kb on - strand at 565.532 kb on - strand at 565.550 kb on + strand at 565.550 kb on + strand at 565.550 kb on + strand at 566.037 kb on + strand, within ABIE51_RS02560 at 566.112 kb on + strand, within ABIE51_RS02560 at 566.112 kb on + strand, within ABIE51_RS02560 at 566.274 kb on + strand, within ABIE51_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 563,940 + ABIE51_RS02550 0.54 +0.1 563,940 + ABIE51_RS02550 0.54 -0.3 563,940 + ABIE51_RS02550 0.54 +0.4 563,940 + ABIE51_RS02550 0.54 +0.1 563,941 - ABIE51_RS02550 0.54 +0.5 564,246 + ABIE51_RS02550 0.73 +0.1 564,247 - ABIE51_RS02550 0.74 +0.4 564,247 - ABIE51_RS02550 0.74 -0.7 564,822 + ABIE51_RS02555 0.18 -0.1 564,822 + ABIE51_RS02555 0.18 -0.5 564,822 + ABIE51_RS02555 0.18 -0.5 564,822 + ABIE51_RS02555 0.18 +1.9 564,823 - ABIE51_RS02555 0.18 +0.8 564,823 - ABIE51_RS02555 0.18 +0.9 565,101 + ABIE51_RS02555 0.55 +0.0 565,101 + ABIE51_RS02555 0.55 -0.6 565,102 - ABIE51_RS02555 0.55 +0.3 565,338 + ABIE51_RS02555 0.86 +0.3 565,435 - -0.3 565,525 + +0.3 565,526 + -0.2 565,526 - +0.2 565,526 - +1.3 565,526 - +1.1 565,532 - -0.4 565,550 + -0.2 565,550 + +0.1 565,550 + -0.3 566,037 + ABIE51_RS02560 0.17 -0.1 566,112 + ABIE51_RS02560 0.22 +0.2 566,112 + ABIE51_RS02560 0.22 +0.6 566,274 + ABIE51_RS02560 0.32 +0.0
Or see this region's nucleotide sequence