Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS15050

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS15045 and ABIE51_RS15050 are separated by 96 nucleotidesABIE51_RS15050 and ABIE51_RS15055 are separated by 527 nucleotides ABIE51_RS15045: ABIE51_RS15045 - TonB-dependent receptor, at 3,267,032 to 3,269,377 _RS15045 ABIE51_RS15050: ABIE51_RS15050 - uracil phosphoribosyltransferase, at 3,269,474 to 3,270,106 _RS15050 ABIE51_RS15055: ABIE51_RS15055 - aldehyde-activating protein, at 3,270,634 to 3,271,035 _RS15055 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -1 0 1at 3268.710 kb on - strand, within ABIE51_RS15045at 3268.976 kb on + strand, within ABIE51_RS15045at 3268.976 kb on + strand, within ABIE51_RS15045at 3268.976 kb on + strand, within ABIE51_RS15045at 3268.977 kb on - strand, within ABIE51_RS15045at 3269.042 kb on + strand, within ABIE51_RS15045at 3269.042 kb on + strand, within ABIE51_RS15045at 3269.043 kb on - strand, within ABIE51_RS15045at 3269.106 kb on - strand, within ABIE51_RS15045at 3269.307 kb on - strandat 3269.348 kb on + strandat 3269.348 kb on + strandat 3269.594 kb on + strand, within ABIE51_RS15050at 3269.595 kb on - strand, within ABIE51_RS15050at 3269.595 kb on - strand, within ABIE51_RS15050at 3269.595 kb on - strand, within ABIE51_RS15050at 3269.810 kb on + strand, within ABIE51_RS15050at 3269.810 kb on + strand, within ABIE51_RS15050at 3269.811 kb on - strand, within ABIE51_RS15050at 3269.813 kb on + strand, within ABIE51_RS15050at 3269.813 kb on + strand, within ABIE51_RS15050at 3269.813 kb on + strand, within ABIE51_RS15050at 3269.814 kb on - strand, within ABIE51_RS15050at 3270.048 kb on - strandat 3270.048 kb on - strandat 3270.048 kb on - strandat 3270.048 kb on - strandat 3270.716 kb on + strand, within ABIE51_RS15055at 3270.716 kb on + strand, within ABIE51_RS15055at 3270.716 kb on + strand, within ABIE51_RS15055at 3270.717 kb on - strand, within ABIE51_RS15055at 3270.717 kb on - strand, within ABIE51_RS15055at 3270.717 kb on - strand, within ABIE51_RS15055at 3270.780 kb on - strand, within ABIE51_RS15055at 3270.867 kb on - strand, within ABIE51_RS15055at 3270.867 kb on - strand, within ABIE51_RS15055at 3270.918 kb on - strand, within ABIE51_RS15055

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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3,268,710 - ABIE51_RS15045 0.72 +0.0
3,268,976 + ABIE51_RS15045 0.83 +1.3
3,268,976 + ABIE51_RS15045 0.83 +0.1
3,268,976 + ABIE51_RS15045 0.83 +0.2
3,268,977 - ABIE51_RS15045 0.83 +0.4
3,269,042 + ABIE51_RS15045 0.86 +0.6
3,269,042 + ABIE51_RS15045 0.86 +0.5
3,269,043 - ABIE51_RS15045 0.86 -0.5
3,269,106 - ABIE51_RS15045 0.88 +0.2
3,269,307 - -0.0
3,269,348 + -0.9
3,269,348 + +0.1
3,269,594 + ABIE51_RS15050 0.19 -0.2
3,269,595 - ABIE51_RS15050 0.19 +0.1
3,269,595 - ABIE51_RS15050 0.19 +0.1
3,269,595 - ABIE51_RS15050 0.19 +0.1
3,269,810 + ABIE51_RS15050 0.53 +0.1
3,269,810 + ABIE51_RS15050 0.53 +0.5
3,269,811 - ABIE51_RS15050 0.53 +0.3
3,269,813 + ABIE51_RS15050 0.54 +0.0
3,269,813 + ABIE51_RS15050 0.54 -0.0
3,269,813 + ABIE51_RS15050 0.54 +0.1
3,269,814 - ABIE51_RS15050 0.54 +0.4
3,270,048 - -0.4
3,270,048 - -0.1
3,270,048 - +1.1
3,270,048 - +0.1
3,270,716 + ABIE51_RS15055 0.20 +0.3
3,270,716 + ABIE51_RS15055 0.20 +0.3
3,270,716 + ABIE51_RS15055 0.20 +0.5
3,270,717 - ABIE51_RS15055 0.21 +0.4
3,270,717 - ABIE51_RS15055 0.21 +0.2
3,270,717 - ABIE51_RS15055 0.21 +0.4
3,270,780 - ABIE51_RS15055 0.36 +0.2
3,270,867 - ABIE51_RS15055 0.58 -0.1
3,270,867 - ABIE51_RS15055 0.58 -0.1
3,270,918 - ABIE51_RS15055 0.71 +0.4

Or see this region's nucleotide sequence