Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS10740

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS10730 and ABIE51_RS10735 are separated by 28 nucleotidesABIE51_RS10735 and ABIE51_RS10740 are separated by 26 nucleotidesABIE51_RS10740 and ABIE51_RS10745 are separated by 85 nucleotides ABIE51_RS10730: ABIE51_RS10730 - zinc-dependent alcohol dehydrogenase, at 2,331,174 to 2,332,343 _RS10730 ABIE51_RS10735: ABIE51_RS10735 - hypothetical protein, at 2,332,372 to 2,332,566 _RS10735 ABIE51_RS10740: ABIE51_RS10740 - SDR family oxidoreductase, at 2,332,593 to 2,333,477 _RS10740 ABIE51_RS10745: ABIE51_RS10745 - hypothetical protein, at 2,333,563 to 2,334,096 _RS10745 Position (kb) 2332 2333 2334Strain fitness (log2 ratio) -1 0 1at 2331.649 kb on + strand, within ABIE51_RS10730at 2331.650 kb on - strand, within ABIE51_RS10730at 2331.653 kb on + strand, within ABIE51_RS10730at 2331.654 kb on - strand, within ABIE51_RS10730at 2331.947 kb on - strand, within ABIE51_RS10730at 2332.211 kb on - strand, within ABIE51_RS10730at 2332.211 kb on - strand, within ABIE51_RS10730at 2332.316 kb on - strandat 2332.564 kb on + strandat 2332.565 kb on - strandat 2332.565 kb on - strandat 2332.888 kb on - strand, within ABIE51_RS10740at 2333.061 kb on + strand, within ABIE51_RS10740at 2333.062 kb on - strand, within ABIE51_RS10740at 2333.062 kb on - strand, within ABIE51_RS10740at 2333.202 kb on + strand, within ABIE51_RS10740at 2333.202 kb on + strand, within ABIE51_RS10740at 2333.202 kb on + strand, within ABIE51_RS10740at 2333.203 kb on - strand, within ABIE51_RS10740at 2333.203 kb on - strand, within ABIE51_RS10740at 2333.203 kb on - strand, within ABIE51_RS10740at 2333.433 kb on + strandat 2333.433 kb on + strandat 2333.434 kb on - strandat 2333.602 kb on + strandat 2333.603 kb on - strandat 2334.147 kb on + strandat 2334.232 kb on - strandat 2334.232 kb on - strandat 2334.346 kb on - strandat 2334.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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2,331,649 + ABIE51_RS10730 0.41 +0.0
2,331,650 - ABIE51_RS10730 0.41 +0.5
2,331,653 + ABIE51_RS10730 0.41 +0.5
2,331,654 - ABIE51_RS10730 0.41 +1.2
2,331,947 - ABIE51_RS10730 0.66 +0.1
2,332,211 - ABIE51_RS10730 0.89 -0.0
2,332,211 - ABIE51_RS10730 0.89 -1.1
2,332,316 - +0.3
2,332,564 + +1.1
2,332,565 - +0.7
2,332,565 - +1.0
2,332,888 - ABIE51_RS10740 0.33 -0.1
2,333,061 + ABIE51_RS10740 0.53 +0.0
2,333,062 - ABIE51_RS10740 0.53 +0.4
2,333,062 - ABIE51_RS10740 0.53 +1.6
2,333,202 + ABIE51_RS10740 0.69 -0.1
2,333,202 + ABIE51_RS10740 0.69 -0.2
2,333,202 + ABIE51_RS10740 0.69 -0.9
2,333,203 - ABIE51_RS10740 0.69 +0.5
2,333,203 - ABIE51_RS10740 0.69 -0.6
2,333,203 - ABIE51_RS10740 0.69 -0.1
2,333,433 + -0.2
2,333,433 + +1.1
2,333,434 - -0.0
2,333,602 + +0.2
2,333,603 - +0.0
2,334,147 + +1.6
2,334,232 - +0.5
2,334,232 - +0.1
2,334,346 - +0.6
2,334,359 - +0.1

Or see this region's nucleotide sequence