Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05670

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS05660 and ABIE51_RS05665 are separated by 65 nucleotidesABIE51_RS05665 and ABIE51_RS05670 are separated by 210 nucleotidesABIE51_RS05670 and ABIE51_RS05675 are separated by 4 nucleotides ABIE51_RS05660: ABIE51_RS05660 - helix-turn-helix domain-containing protein, at 1,218,806 to 1,219,195 _RS05660 ABIE51_RS05665: ABIE51_RS05665 - molybdenum cofactor biosynthesis protein B, at 1,219,261 to 1,219,782 _RS05665 ABIE51_RS05670: ABIE51_RS05670 - PIG-L deacetylase family protein, at 1,219,993 to 1,220,610 _RS05670 ABIE51_RS05675: ABIE51_RS05675 - glycosyltransferase family 2 protein, at 1,220,615 to 1,221,751 _RS05675 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -2 -1 0 1at 1219.805 kb on + strandat 1219.818 kb on - strandat 1219.902 kb on + strandat 1219.920 kb on + strandat 1219.983 kb on + strandat 1220.344 kb on + strand, within ABIE51_RS05670at 1220.452 kb on + strand, within ABIE51_RS05670at 1220.452 kb on + strand, within ABIE51_RS05670at 1220.452 kb on + strand, within ABIE51_RS05670at 1220.453 kb on - strand, within ABIE51_RS05670at 1220.453 kb on - strand, within ABIE51_RS05670at 1220.509 kb on + strand, within ABIE51_RS05670at 1220.510 kb on - strand, within ABIE51_RS05670at 1220.510 kb on - strand, within ABIE51_RS05670at 1220.510 kb on - strand, within ABIE51_RS05670at 1220.510 kb on - strand, within ABIE51_RS05670at 1220.510 kb on - strand, within ABIE51_RS05670at 1220.593 kb on + strandat 1220.593 kb on + strandat 1220.658 kb on - strandat 1220.727 kb on - strandat 1220.780 kb on + strand, within ABIE51_RS05675at 1221.003 kb on - strand, within ABIE51_RS05675at 1221.086 kb on + strand, within ABIE51_RS05675at 1221.086 kb on + strand, within ABIE51_RS05675at 1221.278 kb on + strand, within ABIE51_RS05675at 1221.279 kb on - strand, within ABIE51_RS05675at 1221.501 kb on - strand, within ABIE51_RS05675at 1221.501 kb on - strand, within ABIE51_RS05675

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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1,219,805 + -0.7
1,219,818 - +0.0
1,219,902 + +0.2
1,219,920 + -0.5
1,219,983 + +0.2
1,220,344 + ABIE51_RS05670 0.57 -0.4
1,220,452 + ABIE51_RS05670 0.74 +0.6
1,220,452 + ABIE51_RS05670 0.74 +0.6
1,220,452 + ABIE51_RS05670 0.74 +0.6
1,220,453 - ABIE51_RS05670 0.74 -0.5
1,220,453 - ABIE51_RS05670 0.74 +0.6
1,220,509 + ABIE51_RS05670 0.83 +1.0
1,220,510 - ABIE51_RS05670 0.84 +0.1
1,220,510 - ABIE51_RS05670 0.84 +0.3
1,220,510 - ABIE51_RS05670 0.84 -0.1
1,220,510 - ABIE51_RS05670 0.84 +0.9
1,220,510 - ABIE51_RS05670 0.84 +0.3
1,220,593 + -0.0
1,220,593 + +0.3
1,220,658 - -0.8
1,220,727 - +0.0
1,220,780 + ABIE51_RS05675 0.15 -0.1
1,221,003 - ABIE51_RS05675 0.34 +0.0
1,221,086 + ABIE51_RS05675 0.41 +1.5
1,221,086 + ABIE51_RS05675 0.41 -0.2
1,221,278 + ABIE51_RS05675 0.58 -2.0
1,221,279 - ABIE51_RS05675 0.58 -0.9
1,221,501 - ABIE51_RS05675 0.78 -0.8
1,221,501 - ABIE51_RS05675 0.78 +0.1

Or see this region's nucleotide sequence