Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS10020

Experiment: R2A with 2-pentyl-furan 32.0526 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS10015 and ABIE51_RS10020 are separated by 27 nucleotidesABIE51_RS10020 and ABIE51_RS10025 are separated by 34 nucleotidesABIE51_RS10025 and ABIE51_RS10030 are separated by 13 nucleotidesABIE51_RS10030 and ABIE51_RS10035 are separated by 138 nucleotides ABIE51_RS10015: ABIE51_RS10015 - potassium-transporting ATPase subunit KdpB, at 2,155,379 to 2,157,430 _RS10015 ABIE51_RS10020: ABIE51_RS10020 - potassium-transporting ATPase subunit KdpA, at 2,157,458 to 2,159,161 _RS10020 ABIE51_RS10025: ABIE51_RS10025 - potassium-transporting ATPase subunit F, at 2,159,196 to 2,159,288 _RS10025 ABIE51_RS10030: ABIE51_RS10030 - TorF family putative porin, at 2,159,302 to 2,160,015 _RS10030 ABIE51_RS10035: ABIE51_RS10035 - glyoxylate/hydroxypyruvate reductase A, at 2,160,154 to 2,161,089 _RS10035 Position (kb) 2157 2158 2159 2160Strain fitness (log2 ratio) -3 -2 -1 0 1at 2156.487 kb on + strand, within ABIE51_RS10015at 2156.488 kb on - strand, within ABIE51_RS10015at 2156.488 kb on - strand, within ABIE51_RS10015at 2157.453 kb on - strandat 2157.705 kb on + strand, within ABIE51_RS10020at 2157.719 kb on + strand, within ABIE51_RS10020at 2157.762 kb on + strand, within ABIE51_RS10020at 2157.769 kb on - strand, within ABIE51_RS10020at 2157.769 kb on - strand, within ABIE51_RS10020at 2157.966 kb on - strand, within ABIE51_RS10020at 2158.269 kb on - strand, within ABIE51_RS10020at 2158.633 kb on - strand, within ABIE51_RS10020at 2158.633 kb on - strand, within ABIE51_RS10020at 2158.788 kb on + strand, within ABIE51_RS10020at 2158.788 kb on + strand, within ABIE51_RS10020at 2158.788 kb on + strand, within ABIE51_RS10020at 2158.789 kb on - strand, within ABIE51_RS10020at 2158.789 kb on - strand, within ABIE51_RS10020at 2158.789 kb on - strand, within ABIE51_RS10020at 2158.789 kb on - strand, within ABIE51_RS10020at 2158.812 kb on + strand, within ABIE51_RS10020at 2159.224 kb on + strand, within ABIE51_RS10025at 2159.225 kb on - strand, within ABIE51_RS10025at 2159.492 kb on + strand, within ABIE51_RS10030at 2159.496 kb on - strand, within ABIE51_RS10030at 2159.687 kb on + strand, within ABIE51_RS10030at 2159.688 kb on - strand, within ABIE51_RS10030at 2159.897 kb on + strand, within ABIE51_RS10030at 2159.898 kb on - strand, within ABIE51_RS10030at 2160.023 kb on + strandat 2160.158 kb on + strandat 2160.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 32.0526 mM
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2,156,487 + ABIE51_RS10015 0.54 +0.7
2,156,488 - ABIE51_RS10015 0.54 -0.2
2,156,488 - ABIE51_RS10015 0.54 +0.4
2,157,453 - +1.4
2,157,705 + ABIE51_RS10020 0.14 +0.1
2,157,719 + ABIE51_RS10020 0.15 -0.5
2,157,762 + ABIE51_RS10020 0.18 +0.4
2,157,769 - ABIE51_RS10020 0.18 +0.4
2,157,769 - ABIE51_RS10020 0.18 -0.3
2,157,966 - ABIE51_RS10020 0.30 +0.4
2,158,269 - ABIE51_RS10020 0.48 -0.6
2,158,633 - ABIE51_RS10020 0.69 +0.2
2,158,633 - ABIE51_RS10020 0.69 +0.1
2,158,788 + ABIE51_RS10020 0.78 +0.1
2,158,788 + ABIE51_RS10020 0.78 +0.2
2,158,788 + ABIE51_RS10020 0.78 +0.4
2,158,789 - ABIE51_RS10020 0.78 -0.9
2,158,789 - ABIE51_RS10020 0.78 +0.3
2,158,789 - ABIE51_RS10020 0.78 -0.4
2,158,789 - ABIE51_RS10020 0.78 +0.4
2,158,812 + ABIE51_RS10020 0.79 -0.9
2,159,224 + ABIE51_RS10025 0.30 -0.4
2,159,225 - ABIE51_RS10025 0.31 +0.7
2,159,492 + ABIE51_RS10030 0.27 +0.2
2,159,496 - ABIE51_RS10030 0.27 -3.6
2,159,687 + ABIE51_RS10030 0.54 -1.0
2,159,688 - ABIE51_RS10030 0.54 -0.1
2,159,897 + ABIE51_RS10030 0.83 -0.3
2,159,898 - ABIE51_RS10030 0.83 -0.2
2,160,023 + +0.2
2,160,158 + -0.3
2,160,159 - +0.1

Or see this region's nucleotide sequence