Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS07985

Experiment: R2A with 2-pentyl-furan 32.0526 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS07980 and ABIE51_RS07985 are separated by 178 nucleotidesABIE51_RS07985 and ABIE51_RS07990 are separated by 31 nucleotidesABIE51_RS07990 and ABIE51_RS07995 are separated by 224 nucleotides ABIE51_RS07980: ABIE51_RS07980 - PhoH family protein, at 1,700,120 to 1,701,514 _RS07980 ABIE51_RS07985: ABIE51_RS07985 - peroxiredoxin, at 1,701,693 to 1,702,178 _RS07985 ABIE51_RS07990: ABIE51_RS07990 - glycine cleavage system protein R, at 1,702,210 to 1,702,770 _RS07990 ABIE51_RS07995: ABIE51_RS07995 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,702,995 to 1,703,900 _RS07995 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1700.871 kb on + strand, within ABIE51_RS07980at 1700.871 kb on + strand, within ABIE51_RS07980at 1700.871 kb on + strand, within ABIE51_RS07980at 1700.872 kb on - strand, within ABIE51_RS07980at 1701.006 kb on + strand, within ABIE51_RS07980at 1701.006 kb on + strand, within ABIE51_RS07980at 1701.006 kb on + strand, within ABIE51_RS07980at 1701.045 kb on + strand, within ABIE51_RS07980at 1701.046 kb on - strand, within ABIE51_RS07980at 1701.046 kb on - strand, within ABIE51_RS07980at 1701.046 kb on - strand, within ABIE51_RS07980at 1701.046 kb on - strand, within ABIE51_RS07980at 1701.492 kb on + strandat 1701.492 kb on + strandat 1701.493 kb on - strandat 1701.493 kb on - strandat 1701.570 kb on + strandat 1701.570 kb on + strandat 1701.570 kb on + strandat 1701.804 kb on - strand, within ABIE51_RS07985at 1701.804 kb on - strand, within ABIE51_RS07985at 1701.804 kb on - strand, within ABIE51_RS07985at 1701.804 kb on - strand, within ABIE51_RS07985at 1701.823 kb on + strand, within ABIE51_RS07985at 1701.823 kb on + strand, within ABIE51_RS07985at 1701.824 kb on - strand, within ABIE51_RS07985at 1701.836 kb on - strand, within ABIE51_RS07985at 1702.057 kb on + strand, within ABIE51_RS07985at 1702.058 kb on - strand, within ABIE51_RS07985at 1702.063 kb on + strand, within ABIE51_RS07985at 1702.063 kb on + strand, within ABIE51_RS07985at 1702.064 kb on - strand, within ABIE51_RS07985at 1702.064 kb on - strand, within ABIE51_RS07985at 1702.064 kb on - strand, within ABIE51_RS07985at 1702.065 kb on - strand, within ABIE51_RS07985at 1702.087 kb on + strand, within ABIE51_RS07985at 1702.087 kb on + strand, within ABIE51_RS07985at 1702.087 kb on + strand, within ABIE51_RS07985at 1702.087 kb on + strand, within ABIE51_RS07985at 1702.088 kb on - strand, within ABIE51_RS07985at 1702.088 kb on - strand, within ABIE51_RS07985at 1702.088 kb on - strand, within ABIE51_RS07985at 1702.088 kb on - strand, within ABIE51_RS07985at 1702.466 kb on + strand, within ABIE51_RS07990at 1702.466 kb on + strand, within ABIE51_RS07990at 1702.467 kb on - strand, within ABIE51_RS07990at 1702.467 kb on - strand, within ABIE51_RS07990at 1702.508 kb on + strand, within ABIE51_RS07990at 1702.508 kb on + strand, within ABIE51_RS07990at 1702.668 kb on + strand, within ABIE51_RS07990at 1702.669 kb on - strand, within ABIE51_RS07990at 1702.712 kb on + strand, within ABIE51_RS07990at 1702.712 kb on + strand, within ABIE51_RS07990at 1702.713 kb on - strand, within ABIE51_RS07990at 1702.847 kb on + strandat 1702.847 kb on + strandat 1702.847 kb on + strandat 1702.847 kb on + strandat 1702.847 kb on + strandat 1702.847 kb on + strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.848 kb on - strandat 1702.874 kb on + strandat 1702.874 kb on + strandat 1702.875 kb on - strandat 1702.875 kb on - strandat 1702.875 kb on - strandat 1702.875 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 32.0526 mM
remove
1,700,871 + ABIE51_RS07980 0.54 +0.1
1,700,871 + ABIE51_RS07980 0.54 -1.1
1,700,871 + ABIE51_RS07980 0.54 -0.2
1,700,872 - ABIE51_RS07980 0.54 -0.1
1,701,006 + ABIE51_RS07980 0.64 -1.1
1,701,006 + ABIE51_RS07980 0.64 -1.2
1,701,006 + ABIE51_RS07980 0.64 +0.2
1,701,045 + ABIE51_RS07980 0.66 -0.3
1,701,046 - ABIE51_RS07980 0.66 -0.5
1,701,046 - ABIE51_RS07980 0.66 +0.2
1,701,046 - ABIE51_RS07980 0.66 -2.0
1,701,046 - ABIE51_RS07980 0.66 -0.1
1,701,492 + +0.4
1,701,492 + -0.2
1,701,493 - +1.0
1,701,493 - +0.6
1,701,570 + +0.5
1,701,570 + +0.1
1,701,570 + -0.0
1,701,804 - ABIE51_RS07985 0.23 +0.8
1,701,804 - ABIE51_RS07985 0.23 -0.1
1,701,804 - ABIE51_RS07985 0.23 -0.1
1,701,804 - ABIE51_RS07985 0.23 -0.3
1,701,823 + ABIE51_RS07985 0.27 -1.1
1,701,823 + ABIE51_RS07985 0.27 +0.4
1,701,824 - ABIE51_RS07985 0.27 -0.4
1,701,836 - ABIE51_RS07985 0.29 -0.3
1,702,057 + ABIE51_RS07985 0.75 +0.2
1,702,058 - ABIE51_RS07985 0.75 +0.3
1,702,063 + ABIE51_RS07985 0.76 -0.3
1,702,063 + ABIE51_RS07985 0.76 +0.0
1,702,064 - ABIE51_RS07985 0.76 +1.0
1,702,064 - ABIE51_RS07985 0.76 +0.5
1,702,064 - ABIE51_RS07985 0.76 +0.1
1,702,065 - ABIE51_RS07985 0.77 +1.3
1,702,087 + ABIE51_RS07985 0.81 -0.5
1,702,087 + ABIE51_RS07985 0.81 +0.3
1,702,087 + ABIE51_RS07985 0.81 -0.7
1,702,087 + ABIE51_RS07985 0.81 -0.0
1,702,088 - ABIE51_RS07985 0.81 -0.6
1,702,088 - ABIE51_RS07985 0.81 +2.4
1,702,088 - ABIE51_RS07985 0.81 -1.1
1,702,088 - ABIE51_RS07985 0.81 -1.1
1,702,466 + ABIE51_RS07990 0.46 -0.6
1,702,466 + ABIE51_RS07990 0.46 -0.1
1,702,467 - ABIE51_RS07990 0.46 -0.3
1,702,467 - ABIE51_RS07990 0.46 +0.2
1,702,508 + ABIE51_RS07990 0.53 -2.2
1,702,508 + ABIE51_RS07990 0.53 -0.9
1,702,668 + ABIE51_RS07990 0.82 -1.7
1,702,669 - ABIE51_RS07990 0.82 -0.6
1,702,712 + ABIE51_RS07990 0.89 -0.6
1,702,712 + ABIE51_RS07990 0.89 -0.3
1,702,713 - ABIE51_RS07990 0.90 -0.9
1,702,847 + +0.0
1,702,847 + -0.4
1,702,847 + -0.6
1,702,847 + +0.4
1,702,847 + -0.9
1,702,847 + +1.1
1,702,848 - +0.1
1,702,848 - -0.3
1,702,848 - +3.3
1,702,848 - +0.5
1,702,848 - -0.4
1,702,848 - +0.1
1,702,848 - +0.6
1,702,848 - -0.0
1,702,848 - -1.7
1,702,848 - -0.1
1,702,848 - -0.0
1,702,848 - -0.8
1,702,874 + -0.0
1,702,874 + +0.6
1,702,875 - -0.2
1,702,875 - +0.4
1,702,875 - +0.5
1,702,875 - +0.9

Or see this region's nucleotide sequence