Experiment: R2A with 2-pentyl-furan 32.0526 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04785 and ABIE51_RS04790 are separated by 298 nucleotides ABIE51_RS04790 and ABIE51_RS04795 are separated by 78 nucleotides
ABIE51_RS04785: ABIE51_RS04785 - M23 family metallopeptidase, at 1,034,301 to 1,035,224
_RS04785
ABIE51_RS04790: ABIE51_RS04790 - preprotein translocase subunit SecA, at 1,035,523 to 1,038,252
_RS04790
ABIE51_RS04795: ABIE51_RS04795 - Nudix family hydrolase, at 1,038,331 to 1,039,335
_RS04795
Position (kb) 1035
1036
1037
1038
1039 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.835 kb on + strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.836 kb on - strand, within ABIE51_RS04785 at 1034.961 kb on + strand, within ABIE51_RS04785 at 1034.961 kb on + strand, within ABIE51_RS04785 at 1034.962 kb on - strand, within ABIE51_RS04785 at 1034.962 kb on - strand, within ABIE51_RS04785 at 1035.018 kb on + strand, within ABIE51_RS04785 at 1035.019 kb on - strand, within ABIE51_RS04785 at 1035.255 kb on - strand at 1035.255 kb on - strand at 1035.255 kb on - strand at 1035.255 kb on - strand at 1035.255 kb on - strand at 1035.351 kb on + strand at 1035.351 kb on + strand at 1035.352 kb on - strand at 1035.352 kb on - strand at 1035.382 kb on + strand at 1035.382 kb on + strand at 1035.382 kb on + strand at 1035.382 kb on + strand at 1035.500 kb on + strand at 1038.223 kb on + strand at 1038.223 kb on + strand at 1038.223 kb on + strand at 1038.223 kb on + strand at 1038.224 kb on + strand at 1038.566 kb on + strand, within ABIE51_RS04795 at 1038.566 kb on + strand, within ABIE51_RS04795 at 1038.566 kb on + strand, within ABIE51_RS04795 at 1038.566 kb on + strand, within ABIE51_RS04795 at 1038.566 kb on + strand, within ABIE51_RS04795 at 1038.566 kb on + strand, within ABIE51_RS04795 at 1038.567 kb on - strand, within ABIE51_RS04795 at 1038.567 kb on - strand, within ABIE51_RS04795 at 1038.567 kb on - strand, within ABIE51_RS04795 at 1038.567 kb on - strand, within ABIE51_RS04795 at 1038.567 kb on - strand, within ABIE51_RS04795 at 1038.567 kb on - strand, within ABIE51_RS04795 at 1038.730 kb on + strand, within ABIE51_RS04795 at 1038.730 kb on + strand, within ABIE51_RS04795 at 1038.787 kb on + strand, within ABIE51_RS04795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 32.0526 mM remove 1,034,835 + ABIE51_RS04785 0.58 +0.7 1,034,835 + ABIE51_RS04785 0.58 +1.0 1,034,835 + ABIE51_RS04785 0.58 +2.2 1,034,835 + ABIE51_RS04785 0.58 +0.6 1,034,835 + ABIE51_RS04785 0.58 +0.1 1,034,835 + ABIE51_RS04785 0.58 +0.5 1,034,835 + ABIE51_RS04785 0.58 +0.8 1,034,835 + ABIE51_RS04785 0.58 -0.4 1,034,835 + ABIE51_RS04785 0.58 +0.2 1,034,835 + ABIE51_RS04785 0.58 +0.9 1,034,835 + ABIE51_RS04785 0.58 +0.7 1,034,836 - ABIE51_RS04785 0.58 +1.8 1,034,836 - ABIE51_RS04785 0.58 +0.5 1,034,836 - ABIE51_RS04785 0.58 +0.4 1,034,836 - ABIE51_RS04785 0.58 +0.4 1,034,836 - ABIE51_RS04785 0.58 +0.2 1,034,836 - ABIE51_RS04785 0.58 +1.0 1,034,836 - ABIE51_RS04785 0.58 +1.5 1,034,836 - ABIE51_RS04785 0.58 +2.1 1,034,836 - ABIE51_RS04785 0.58 +0.7 1,034,836 - ABIE51_RS04785 0.58 -0.9 1,034,836 - ABIE51_RS04785 0.58 +0.3 1,034,836 - ABIE51_RS04785 0.58 +0.8 1,034,961 + ABIE51_RS04785 0.71 -0.3 1,034,961 + ABIE51_RS04785 0.71 +1.0 1,034,962 - ABIE51_RS04785 0.72 +0.3 1,034,962 - ABIE51_RS04785 0.72 +0.7 1,035,018 + ABIE51_RS04785 0.78 +1.0 1,035,019 - ABIE51_RS04785 0.78 +0.4 1,035,255 - +0.3 1,035,255 - +0.3 1,035,255 - -0.3 1,035,255 - +0.1 1,035,255 - +0.9 1,035,351 + -0.1 1,035,351 + -0.4 1,035,352 - +0.2 1,035,352 - -0.0 1,035,382 + +0.5 1,035,382 + +0.9 1,035,382 + +0.6 1,035,382 + -0.0 1,035,500 + -0.3 1,038,223 + -0.0 1,038,223 + -0.7 1,038,223 + +0.2 1,038,223 + +0.4 1,038,224 + +0.0 1,038,566 + ABIE51_RS04795 0.23 +0.2 1,038,566 + ABIE51_RS04795 0.23 -0.8 1,038,566 + ABIE51_RS04795 0.23 -1.5 1,038,566 + ABIE51_RS04795 0.23 +0.6 1,038,566 + ABIE51_RS04795 0.23 +0.2 1,038,566 + ABIE51_RS04795 0.23 +0.1 1,038,567 - ABIE51_RS04795 0.23 +0.2 1,038,567 - ABIE51_RS04795 0.23 -0.9 1,038,567 - ABIE51_RS04795 0.23 -1.5 1,038,567 - ABIE51_RS04795 0.23 -0.7 1,038,567 - ABIE51_RS04795 0.23 +0.0 1,038,567 - ABIE51_RS04795 0.23 -1.1 1,038,730 + ABIE51_RS04795 0.40 -0.2 1,038,730 + ABIE51_RS04795 0.40 -2.3 1,038,787 + ABIE51_RS04795 0.45 -0.1
Or see this region's nucleotide sequence