Strain Fitness in Marinobacter adhaerens HP15 around HP15_98

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_97 and HP15_98 are separated by 270 nucleotidesHP15_98 and HP15_99 are separated by 367 nucleotidesHP15_99 and HP15_100 overlap by 4 nucleotides HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559 _97 HP15_98: HP15_98 - secreted protein with internal repeats-like protein, at 100,830 to 101,192 _98 HP15_99: HP15_99 - hypothetical protein, at 101,560 to 102,087 _99 HP15_100: HP15_100 - saccharopine dehydrogenase, at 102,084 to 103,295 _100 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 99.836 kb on + strand, within HP15_97at 99.885 kb on - strand, within HP15_97at 99.972 kb on + strand, within HP15_97at 100.029 kb on - strand, within HP15_97at 100.034 kb on - strand, within HP15_97at 100.069 kb on - strand, within HP15_97at 100.069 kb on - strand, within HP15_97at 100.084 kb on - strand, within HP15_97at 100.139 kb on - strand, within HP15_97at 100.219 kb on + strand, within HP15_97at 100.270 kb on - strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.297 kb on + strand, within HP15_97at 100.297 kb on + strand, within HP15_97at 100.331 kb on - strand, within HP15_97at 100.464 kb on + strand, within HP15_97at 100.513 kb on + strandat 100.530 kb on + strandat 100.536 kb on - strandat 100.538 kb on - strandat 100.637 kb on - strandat 100.653 kb on + strandat 100.653 kb on + strandat 100.749 kb on - strandat 100.798 kb on + strandat 100.863 kb on + strandat 100.863 kb on + strandat 100.873 kb on + strand, within HP15_98at 100.873 kb on + strand, within HP15_98at 100.906 kb on - strand, within HP15_98at 100.997 kb on + strand, within HP15_98at 101.007 kb on + strand, within HP15_98at 101.007 kb on + strand, within HP15_98at 101.130 kb on + strand, within HP15_98at 101.199 kb on - strandat 101.259 kb on - strandat 101.281 kb on - strandat 101.352 kb on - strandat 101.364 kb on + strandat 101.481 kb on - strandat 101.504 kb on + strandat 101.517 kb on - strandat 101.565 kb on - strandat 101.581 kb on - strandat 101.665 kb on + strand, within HP15_99at 101.732 kb on - strand, within HP15_99at 101.747 kb on - strand, within HP15_99at 101.782 kb on + strand, within HP15_99at 101.862 kb on - strand, within HP15_99at 101.914 kb on + strand, within HP15_99at 101.918 kb on - strand, within HP15_99at 101.946 kb on + strand, within HP15_99at 101.946 kb on + strand, within HP15_99at 101.983 kb on + strand, within HP15_99at 101.983 kb on + strand, within HP15_99at 101.983 kb on + strand, within HP15_99at 101.991 kb on - strand, within HP15_99at 101.991 kb on - strand, within HP15_99at 101.991 kb on - strand, within HP15_99at 102.039 kb on - strandat 102.047 kb on - strandat 102.047 kb on - strandat 102.057 kb on - strandat 102.062 kb on + strandat 102.082 kb on + strandat 102.132 kb on + strandat 102.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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99,836 + HP15_97 0.19 -0.2
99,885 - HP15_97 0.25 -0.1
99,972 + HP15_97 0.34 -0.9
100,029 - HP15_97 0.41 -1.6
100,034 - HP15_97 0.41 +0.2
100,069 - HP15_97 0.45 -0.4
100,069 - HP15_97 0.45 +0.3
100,084 - HP15_97 0.47 -0.3
100,139 - HP15_97 0.53 +0.8
100,219 + HP15_97 0.62 +0.6
100,270 - HP15_97 0.68 -0.2
100,289 + HP15_97 0.70 -0.7
100,289 + HP15_97 0.70 -1.5
100,289 + HP15_97 0.70 -0.2
100,289 + HP15_97 0.70 +0.5
100,289 + HP15_97 0.70 +0.3
100,289 + HP15_97 0.70 -1.2
100,289 + HP15_97 0.70 +0.2
100,297 + HP15_97 0.71 -0.0
100,297 + HP15_97 0.71 +0.1
100,331 - HP15_97 0.74 +0.1
100,464 + HP15_97 0.89 +0.5
100,513 + +0.1
100,530 + -0.2
100,536 - +0.1
100,538 - +1.7
100,637 - -0.0
100,653 + +0.4
100,653 + +0.5
100,749 - -0.1
100,798 + +0.3
100,863 + -0.3
100,863 + -0.0
100,873 + HP15_98 0.12 -0.4
100,873 + HP15_98 0.12 -1.0
100,906 - HP15_98 0.21 -0.2
100,997 + HP15_98 0.46 -0.4
101,007 + HP15_98 0.49 -0.0
101,007 + HP15_98 0.49 -0.4
101,130 + HP15_98 0.83 -0.1
101,199 - -0.8
101,259 - -0.2
101,281 - -0.7
101,352 - -1.8
101,364 + +1.1
101,481 - +0.5
101,504 + +1.4
101,517 - +0.1
101,565 - +0.1
101,581 - +0.7
101,665 + HP15_99 0.20 -0.2
101,732 - HP15_99 0.33 +0.0
101,747 - HP15_99 0.35 -0.5
101,782 + HP15_99 0.42 -0.2
101,862 - HP15_99 0.57 +0.1
101,914 + HP15_99 0.67 -0.8
101,918 - HP15_99 0.68 +0.0
101,946 + HP15_99 0.73 -0.3
101,946 + HP15_99 0.73 +0.1
101,983 + HP15_99 0.80 +0.4
101,983 + HP15_99 0.80 +0.2
101,983 + HP15_99 0.80 +0.6
101,991 - HP15_99 0.82 -0.1
101,991 - HP15_99 0.82 -0.3
101,991 - HP15_99 0.82 -0.1
102,039 - -0.1
102,047 - -1.4
102,047 - +0.6
102,057 - -0.1
102,062 + -0.4
102,082 + +2.0
102,132 + +0.0
102,183 - -0.1

Or see this region's nucleotide sequence