Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_865 and HP15_866 overlap by 10 nucleotides HP15_866 and HP15_867 are separated by 37 nucleotides HP15_867 and HP15_868 are separated by 21 nucleotides HP15_868 and HP15_869 are separated by 88 nucleotides
HP15_865: HP15_865 - abortive infection protein, at 886,883 to 887,473
_865
HP15_866: HP15_866 - conserved hypothetical protein, membrane, at 887,464 to 887,883
_866
HP15_867: HP15_867 - protein containing AIG2-like domain, at 887,921 to 888,274
_867
HP15_868: HP15_868 - transcriptional regulator, LysR family, at 888,296 to 889,177
_868
HP15_869: HP15_869 - lysine exporter protein (LYSE/YGGA), at 889,266 to 889,871
_869
Position (kb) 887
888
889 Strain fitness (log2 ratio) -1
0
1 at 886.925 kb on - strand at 887.011 kb on + strand, within HP15_865 at 887.021 kb on + strand, within HP15_865 at 887.195 kb on + strand, within HP15_865 at 887.252 kb on + strand, within HP15_865 at 887.270 kb on - strand, within HP15_865 at 887.318 kb on + strand, within HP15_865 at 887.367 kb on - strand, within HP15_865 at 887.376 kb on + strand, within HP15_865 at 887.424 kb on + strand at 887.432 kb on - strand at 887.432 kb on - strand at 887.513 kb on - strand, within HP15_866 at 887.545 kb on + strand, within HP15_866 at 887.589 kb on + strand, within HP15_866 at 887.667 kb on + strand, within HP15_866 at 887.776 kb on - strand, within HP15_866 at 887.862 kb on + strand at 887.921 kb on - strand at 887.988 kb on + strand, within HP15_867 at 887.994 kb on + strand, within HP15_867 at 888.214 kb on + strand, within HP15_867 at 888.237 kb on + strand, within HP15_867 at 888.338 kb on + strand at 888.355 kb on - strand at 888.402 kb on - strand, within HP15_868 at 888.402 kb on - strand, within HP15_868 at 888.473 kb on + strand, within HP15_868 at 888.481 kb on - strand, within HP15_868 at 888.685 kb on - strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.923 kb on - strand, within HP15_868 at 888.946 kb on + strand, within HP15_868 at 889.015 kb on - strand, within HP15_868 at 889.134 kb on - strand at 889.135 kb on + strand at 889.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 886,925 - +1.1 887,011 + HP15_865 0.22 +1.4 887,021 + HP15_865 0.23 +0.3 887,195 + HP15_865 0.53 -0.3 887,252 + HP15_865 0.62 +0.3 887,270 - HP15_865 0.65 +0.2 887,318 + HP15_865 0.74 +0.2 887,367 - HP15_865 0.82 -0.1 887,376 + HP15_865 0.83 +0.2 887,424 + +0.0 887,432 - -0.6 887,432 - +0.7 887,513 - HP15_866 0.12 -0.9 887,545 + HP15_866 0.19 -0.5 887,589 + HP15_866 0.30 +0.5 887,667 + HP15_866 0.48 -0.8 887,776 - HP15_866 0.74 +0.0 887,862 + -0.3 887,921 - +0.0 887,988 + HP15_867 0.19 +0.2 887,994 + HP15_867 0.21 -1.3 888,214 + HP15_867 0.83 -1.7 888,237 + HP15_867 0.89 -0.0 888,338 + +0.5 888,355 - -0.3 888,402 - HP15_868 0.12 -0.6 888,402 - HP15_868 0.12 +0.3 888,473 + HP15_868 0.20 -0.1 888,481 - HP15_868 0.21 +0.0 888,685 - HP15_868 0.44 +0.1 888,732 + HP15_868 0.49 +0.2 888,732 + HP15_868 0.49 -0.2 888,732 + HP15_868 0.49 -0.3 888,923 - HP15_868 0.71 +0.4 888,946 + HP15_868 0.74 -0.1 889,015 - HP15_868 0.82 -1.5 889,134 - +0.2 889,135 + +0.1 889,152 - -0.3
Or see this region's nucleotide sequence