Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_620 and HP15_tRNA12 are separated by 128 nucleotides HP15_tRNA12 and HP15_621 are separated by 146 nucleotides HP15_621 and HP15_622 are separated by 6 nucleotides
HP15_620: HP15_620 - conserved hypothetical protein, secreted, at 643,678 to 645,561
_620
HP15_tRNA12: HP15_tRNA12 - tRNA-Leu, at 645,690 to 645,776
_tRNA12
HP15_621: HP15_621 - hypothetical protein, at 645,923 to 646,156
_621
HP15_622: HP15_622 - exoribonuclease R, at 646,163 to 648,604
_622
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 644.950 kb on + strand, within HP15_620 at 644.970 kb on - strand, within HP15_620 at 644.972 kb on + strand, within HP15_620 at 644.972 kb on + strand, within HP15_620 at 644.980 kb on - strand, within HP15_620 at 645.000 kb on + strand, within HP15_620 at 645.036 kb on - strand, within HP15_620 at 645.074 kb on + strand, within HP15_620 at 645.092 kb on - strand, within HP15_620 at 645.100 kb on + strand, within HP15_620 at 645.101 kb on - strand, within HP15_620 at 645.220 kb on + strand, within HP15_620 at 645.221 kb on - strand, within HP15_620 at 645.325 kb on + strand, within HP15_620 at 645.333 kb on - strand, within HP15_620 at 645.343 kb on - strand, within HP15_620 at 645.454 kb on + strand at 645.611 kb on + strand at 645.618 kb on + strand at 645.628 kb on - strand at 645.904 kb on + strand at 645.958 kb on - strand, within HP15_621 at 645.980 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.995 kb on - strand, within HP15_621 at 646.020 kb on + strand, within HP15_621 at 646.191 kb on - strand at 646.195 kb on + strand at 646.300 kb on - strand at 646.359 kb on + strand at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.839 kb on + strand, within HP15_622 at 646.957 kb on - strand, within HP15_622 at 647.029 kb on + strand, within HP15_622 at 647.076 kb on - strand, within HP15_622 at 647.095 kb on + strand, within HP15_622
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 644,950 + HP15_620 0.68 -0.1 644,970 - HP15_620 0.69 +0.4 644,972 + HP15_620 0.69 +1.7 644,972 + HP15_620 0.69 +0.5 644,980 - HP15_620 0.69 +0.2 645,000 + HP15_620 0.70 +0.0 645,036 - HP15_620 0.72 +0.6 645,074 + HP15_620 0.74 +0.6 645,092 - HP15_620 0.75 -0.1 645,100 + HP15_620 0.75 -0.4 645,101 - HP15_620 0.76 -0.1 645,220 + HP15_620 0.82 +0.1 645,221 - HP15_620 0.82 +0.2 645,325 + HP15_620 0.87 +0.5 645,333 - HP15_620 0.88 +0.4 645,343 - HP15_620 0.88 +0.5 645,454 + -0.0 645,611 + -0.2 645,618 + -0.6 645,628 - +1.0 645,904 + -0.3 645,958 - HP15_621 0.15 -0.5 645,980 + HP15_621 0.24 -1.4 645,982 + HP15_621 0.25 +0.0 645,982 + HP15_621 0.25 -0.9 645,990 - HP15_621 0.29 -0.9 645,990 - HP15_621 0.29 -1.1 645,990 - HP15_621 0.29 -2.0 645,990 - HP15_621 0.29 -0.8 645,995 - HP15_621 0.31 +0.1 646,020 + HP15_621 0.41 -0.3 646,191 - -1.0 646,195 + -0.9 646,300 - -2.2 646,359 + -0.3 646,571 - HP15_622 0.17 -3.0 646,571 - HP15_622 0.17 -2.3 646,571 - HP15_622 0.17 -2.6 646,839 + HP15_622 0.28 -2.1 646,957 - HP15_622 0.33 -1.7 647,029 + HP15_622 0.35 -3.2 647,076 - HP15_622 0.37 -1.8 647,095 + HP15_622 0.38 -3.1
Or see this region's nucleotide sequence